Tan0003968 (gene) Snake gourd v1

Overview


Name	Tan0003968
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Protein of unknown function (DUF3511)
Location	LG03: 70214159 .. 70215094 (+)
RNA-Seq Expression	Tan0003968
Synteny	Tan0003968

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCCTAGTAGCACATATTTATAGGAGAGAAGACATACTTATGAAACATATCCAAAGTTTTTAATGATGGAGAGAAGCAAATCATTTTGTGGGTCTTACTCAAATGCCTATGGAGATGTGAGGTTTGGATTTGAGGACAGACCCAAATCATACAGCTTCAATGGGACAATCAACAAGGAAGATGAGGGCAATCCAGAGCTCAAGAGGAGACAAAGAGTAGCTACTTACAATATGTATTCAATGGAAGGTAAGCTGAAGAAGTCCTTGAGAAACAGCTTCAAGTGGATCAAGAACAAGTTTTCCCACAGCTTTTATGATGATTGAGTTGTAAATTCTCCTTTTGTAAACTATTCTTGTTTCTGTGTGAGACTACAAGCTTATGCACACTTCAATTCTATGGCCATCTCCACATTGATCCCCAAGCATACAACTAAAAAGTCTTAACATTTGGCCCTACTATATTTGGTTACCACGAAAACTCGTAGAATATTAAATTCTAGGTAGGTGGCCATCATGAATGCAATAAACAGTCAATAGTGAGCATCTAGCATGAATGTAGTAAAACAATATGTTATATTACATATATTACCTAGCATGGATGTAGCAAGCTTGGCATAAGGTCATGAGTTAAAAGATATAAATATAACATCATCAAATTTTAAATGATGTTATGCTTTAGAGACAAGAAAAATAGAAAGCTTTCACAGTCTTTCCATAACATCTCCAGTAGCCATAACAGAGGTTCACATTTGGATGGAATGGATTATCAATACAAAGTTTACTGTCTTCTCCTACACTATCAAGTACTGATATCCAATATAGATGCAAGTCTTTATACATCTCTATCATTGGGATTTCAAAAACTTCATCAAAAGCCAAACAGAAATAAATAAATAAGTGCATTTTTACTCTTAAAGGAATTCGAACTAGAGTTCT

mRNA sequence

GTTCCTAGTAGCACATATTTATAGGAGAGAAGACATACTTATGAAACATATCCAAAGTTTTTAATGATGGAGAGAAGCAAATCATTTTGTGGGTCTTACTCAAATGCCTATGGAGATGTGAGGTTTGGATTTGAGGACAGACCCAAATCATACAGCTTCAATGGGACAATCAACAAGGAAGATGAGGGCAATCCAGAGCTCAAGAGGAGACAAAGAGTAGCTACTTACAATATGTATTCAATGGAAGGTAAGCTGAAGAAGTCCTTGAGAAACAGCTTCAAGTGGATCAAGAACAAGTTTTCCCACAGCTTTTATGATGATTGAGTTGTAAATTCTCCTTTTGTAAACTATTCTTGTTTCTGTGTGAGACTACAAGCTTATGCACACTTCAATTCTATGGCCATCTCCACATTGATCCCCAAGCATACAACTAAAAAGTCTTAACATTTGGCCCTACTATATTTGGTTACCACGAAAACTCGTAGAATATTAAATTCTAGGTAGGTGGCCATCATGAATGCAATAAACAGTCAATAGTGAGCATCTAGCATGAATGTAGTAAAACAATATGTTATATTACATATATTACCTAGCATGGATGTAGCAAGCTTGGCATAAGGTCATGAGTTAAAAGATATAAATATAACATCATCAAATTTTAAATGATGTTATGCTTTAGAGACAAGAAAAATAGAAAGCTTTCACAGTCTTTCCATAACATCTCCAGTAGCCATAACAGAGGTTCACATTTGGATGGAATGGATTATCAATACAAAGTTTACTGTCTTCTCCTACACTATCAAGTACTGATATCCAATATAGATGCAAGTCTTTATACATCTCTATCATTGGGATTTCAAAAACTTCATCAAAAGCCAAACAGAAATAAATAAATAAGTGCATTTTTACTCTTAAAGGAATTCGAACTAGAGTTCT

Coding sequence (CDS)

ATGATGGAGAGAAGCAAATCATTTTGTGGGTCTTACTCAAATGCCTATGGAGATGTGAGGTTTGGATTTGAGGACAGACCCAAATCATACAGCTTCAATGGGACAATCAACAAGGAAGATGAGGGCAATCCAGAGCTCAAGAGGAGACAAAGAGTAGCTACTTACAATATGTATTCAATGGAAGGTAAGCTGAAGAAGTCCTTGAGAAACAGCTTCAAGTGGATCAAGAACAAGTTTTCCCACAGCTTTTATGATGATTGA

Protein sequence

MMERSKSFCGSYSNAYGDVRFGFEDRPKSYSFNGTINKEDEGNPELKRRQRVATYNMYSMEGKLKKSLRNSFKWIKNKFSHSFYDD

Homology

[Close]

BLAST of Tan0003968 vs. NCBI nr
Match: KAE8647476.1 (hypothetical protein Csa_003778 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 77/86 (89.53%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1   MMERSKSFCGSYSNAYGDVRFGFEDRPKSYSFNGTINKEDEGNPELKRRQRVATYNMYSM 60
           MMERSKS  GSYS AYGDVRFGFED PKSYSFNGTI KED  N ELKRRQRVATYNMYSM
Sbjct: 64  MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM 123

Query: 61  EGKLKKSLRNSFKWIKNKFSHSFYDD 87
           EGKLKKSLRNSFKWIKNK SHSFYDD
Sbjct: 124 EGKLKKSLRNSFKWIKNKISHSFYDD 149

[Close]

BLAST of Tan0003968 vs. NCBI nr
Match: TYK12983.1 (hypothetical protein E5676_scaffold255G005800 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 2.4e-32
Identity = 73/85 (85.88%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MMERSKSFCGSYSNAYGDVRFGFEDRPKSYSFNGTINKEDEGNPELKRRQRVATYNMYSM 60
          MMERSKS  GSYS AYGDVRFGFED PKSYSF+GT+ KED  N ELKRRQRVATYNMYSM
Sbjct: 1  MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFDGTVKKEDVVNQELKRRQRVATYNMYSM 60

Query: 61 EGKLKKSLRNSFKWIKNKFSHSFYD 86
          EGKLKKSLRNSFKWIKNK SHSFY+
Sbjct: 61 EGKLKKSLRNSFKWIKNKISHSFYN 85

[Close]

BLAST of Tan0003968 vs. NCBI nr
Match: PON52269.1 (hypothetical protein TorRG33x02_308860 [Trema orientale])

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-24
Identity = 63/91 (69.23%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 2  MERSKSFCGSYSNAYGDVRFGFEDRPKSYSFNGTINK--EDE----GNPELKRRQRVATY 61
          MERSKS  G YS+ YGD RFGFEDR KSYSFNG  ++  +DE    GNPE+KRR+RVA Y
Sbjct: 1  MERSKSLPGHYSSLYGDGRFGFEDRSKSYSFNGPSSQAADDEFASSGNPEMKRRKRVAAY 60

Query: 62 NMYSMEGKLKKSLRNSFKWIKNKFSHSFYDD 87
          NMY+MEGKLK SLRNSFKWIK+KF  ++YDD
Sbjct: 61 NMYAMEGKLKSSLRNSFKWIKSKFVDTYYDD 91

[Close]

BLAST of Tan0003968 vs. NCBI nr
Match: PRQ49076.1 (hypothetical protein RchiOBHm_Chr2g0117891 [Rosa chinensis])

HSP 1 Score: 120.6 bits (301), Expect = 6.9e-24
Identity = 60/94 (63.83%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 2  MERSKSFCGSYSNAYGDVRFGFEDRPKSYSFNGTINKED---------EGNPELKRRQRV 61
          ME+SKSF G YS AY + RFGFEDRPKSYSFNG ++K +           NPEL+RR+RV
Sbjct: 1  MEKSKSFSGYYSTAYTEARFGFEDRPKSYSFNGPVSKVEGPSSASGSGNSNPELERRKRV 60

Query: 62 ATYNMYSMEGKLKKSLRNSFKWIKNKFSHSFYDD 87
          A YNMY+MEGK K SLRNSFKWIK KF  +FYD+
Sbjct: 61 ANYNMYTMEGKFKSSLRNSFKWIKGKFVDNFYDE 94

[Close]

BLAST of Tan0003968 vs. NCBI nr
Match: EXB64484.1 (hypothetical protein L484_006721 [Morus notabilis])

HSP 1 Score: 118.2 bits (295), Expect = 3.4e-23
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 2  MERSKSFCGSYSNAYGDVRFGFEDRPKSYSFNG-TINKED-----EGNPELKRRQRVATY 61
          M+RSKS  G YS+ YGD RFGFEDR KSYSFNG ++  ED       NPE+KRR+RVA Y
Sbjct: 1  MDRSKSLPGHYSSLYGDARFGFEDRAKSYSFNGPSVRVEDHELGSSSNPEMKRRKRVANY 60

Query: 62 NMYSMEGKLKKSLRNSFKWIKNKFSHSFYDD 87
          NMY+MEGKLK SLRNSFKWIK+KF  ++YD+
Sbjct: 61 NMYAMEGKLKSSLRNSFKWIKSKFVDTYYDE 91

[Close]

BLAST of Tan0003968 vs. ExPASy TrEMBL
Match: A0A0A0KFC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486830 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.5e-35
Identity = 77/86 (89.53%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MMERSKSFCGSYSNAYGDVRFGFEDRPKSYSFNGTINKEDEGNPELKRRQRVATYNMYSM 60
          MMERSKS  GSYS AYGDVRFGFED PKSYSFNGTI KED  N ELKRRQRVATYNMYSM
Sbjct: 1  MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM 60

Query: 61 EGKLKKSLRNSFKWIKNKFSHSFYDD 87
          EGKLKKSLRNSFKWIKNK SHSFYDD
Sbjct: 61 EGKLKKSLRNSFKWIKNKISHSFYDD 86

[Close]

BLAST of Tan0003968 vs. ExPASy TrEMBL
Match: A0A5D3CM35 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005800 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 73/85 (85.88%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MMERSKSFCGSYSNAYGDVRFGFEDRPKSYSFNGTINKEDEGNPELKRRQRVATYNMYSM 60
          MMERSKS  GSYS AYGDVRFGFED PKSYSF+GT+ KED  N ELKRRQRVATYNMYSM
Sbjct: 1  MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFDGTVKKEDVVNQELKRRQRVATYNMYSM 60

Query: 61 EGKLKKSLRNSFKWIKNKFSHSFYD 86
          EGKLKKSLRNSFKWIKNK SHSFY+
Sbjct: 61 EGKLKKSLRNSFKWIKNKISHSFYN 85

[Close]

BLAST of Tan0003968 vs. ExPASy TrEMBL
Match: A0A2P5BU01 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_308860 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 63/91 (69.23%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 2  MERSKSFCGSYSNAYGDVRFGFEDRPKSYSFNGTINK--EDE----GNPELKRRQRVATY 61
          MERSKS  G YS+ YGD RFGFEDR KSYSFNG  ++  +DE    GNPE+KRR+RVA Y
Sbjct: 1  MERSKSLPGHYSSLYGDGRFGFEDRSKSYSFNGPSSQAADDEFASSGNPEMKRRKRVAAY 60

Query: 62 NMYSMEGKLKKSLRNSFKWIKNKFSHSFYDD 87
          NMY+MEGKLK SLRNSFKWIK+KF  ++YDD
Sbjct: 61 NMYAMEGKLKSSLRNSFKWIKSKFVDTYYDD 91

[Close]

BLAST of Tan0003968 vs. ExPASy TrEMBL
Match: A0A2P6RRL4 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0117891 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.3e-24
Identity = 60/94 (63.83%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 2  MERSKSFCGSYSNAYGDVRFGFEDRPKSYSFNGTINKED---------EGNPELKRRQRV 61
          ME+SKSF G YS AY + RFGFEDRPKSYSFNG ++K +           NPEL+RR+RV
Sbjct: 1  MEKSKSFSGYYSTAYTEARFGFEDRPKSYSFNGPVSKVEGPSSASGSGNSNPELERRKRV 60

Query: 62 ATYNMYSMEGKLKKSLRNSFKWIKNKFSHSFYDD 87
          A YNMY+MEGK K SLRNSFKWIK KF  +FYD+
Sbjct: 61 ANYNMYTMEGKFKSSLRNSFKWIKGKFVDNFYDE 94

[Close]

BLAST of Tan0003968 vs. ExPASy TrEMBL
Match: A0A6A1VCF1 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G025428 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-23
Identity = 62/90 (68.89%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 2  MERSKSFCGSYSNAYGDVRFGFEDRPKSYSFNGTINKEDE-----GNPELKRRQRVATYN 61
          ME+SKSF G YS  Y DVR  FEDR KSYSFNG     DE     GNPE+KRR+RVATYN
Sbjct: 1  MEKSKSFSGHYSTPYTDVRAAFEDRSKSYSFNGPNADIDELGSTSGNPEIKRRKRVATYN 60

Query: 62 MYSMEGKLKKSLRNSFKWIKNKFSHSFYDD 87
          MY+MEGKLK SLRNSFKWIK+KFS +F D+
Sbjct: 61 MYTMEGKLKSSLRNSFKWIKSKFSDNFNDE 90

[Close]

BLAST of Tan0003968 vs. TAIR 10
Match: AT4G09890.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 77.0 bits (188), Expect = 8.1e-15
Identity = 41/81 (50.62%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MMERSKSFCGSYSNAYGDVRFGF-EDRPKSYSFNGTINKEDEGNPELKRRQRVATYNMYS 60
          MM+ SKS+   YS+++    FG+ ++R  SY+FNG     D   PE+KR++RVA+YN+++
Sbjct: 1  MMKGSKSYT-EYSSSFSTDEFGYDQNRSNSYNFNGPCINTD---PEMKRKKRVASYNLFA 60

Query: 61 MEGKLKKSLRNSFKWIKNKFS 81
           E KLK +L+NSFKWIKNKFS
Sbjct: 61 TEEKLKSTLKNSFKWIKNKFS 77

[Close]

BLAST of Tan0003968 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 54.3 bits (129), Expect = 5.6e-08
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 26  RPKSYSFNGTINKEDEGNPELKRRQRVATYNMYSMEGKLKKSLRNSFKWIK 77
           RP+  S + T+ K    +PE+KR++RVA Y +YS EGK+K +LR S+KWIK
Sbjct: 64  RPRRSSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIK 114

[Close]

BLAST of Tan0003968 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 53.9 bits (128), Expect = 7.3e-08
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 11  SYSNAYGDVRFGFEDRPKSYSFNGTINKEDEGNPELKRRQRVATYNMYSMEGKLKKSLRN 70
           SYS +YG       D  K  S           +PEL+R++RVA+Y MY +EGK+K S RN
Sbjct: 30  SYSASYGTRENNIYDVKKEKSI-ARSKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRN 89

Query: 71  SFKWIKNKFSHSFY 85
           SF+W+K +++   Y
Sbjct: 90  SFRWLKQRYTQVVY 102

[Close]

BLAST of Tan0003968 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 48.9 bits (115), Expect = 2.4e-06
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 11  SYSNAYGD--VRFGFEDRPKSYSFNGTINKEDEGNPELKRRQRVATYNMYSMEGKLKKSL 70
           SYS +Y D   R   +  PK    + + +     +P+L+R++RV +Y  Y++EGKLK S 
Sbjct: 42  SYSTSYTDYPTRIPEDQNPKK-GRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSF 101

Query: 71  RNSFKWIKNK 79
           R SFKWIK+K
Sbjct: 102 RKSFKWIKDK 110

[Close]

BLAST of Tan0003968 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 48.9 bits (115), Expect = 2.4e-06
Identity = 19/34 (55.88%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 45  ELKRRQRVATYNMYSMEGKLKKSLRNSFKWIKNK 79
           E+KR++R+A Y  Y++EGK+K +L+N F+WIKNK
Sbjct: 69  EMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNK 102

The following BLAST results are available for this feature:

BLAST of Tan0003968 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003968 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647476.1	1.1e-34	89.53	hypothetical protein Csa_003778 [Cucumis sativus]	[more]
TYK12983.1	2.4e-32	85.88	hypothetical protein E5676_scaffold255G005800 [Cucumis melo var. makuwa]	[more]
PON52269.1	3.1e-24	69.23	hypothetical protein TorRG33x02_308860 [Trema orientale]	[more]
PRQ49076.1	6.9e-24	63.83	hypothetical protein RchiOBHm_Chr2g0117891 [Rosa chinensis]	[more]
EXB64484.1	3.4e-23	65.93	hypothetical protein L484_006721 [Morus notabilis]	[more]

BLAST of Tan0003968 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFC2	5.5e-35	89.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486830 PE=4 SV=1	[more]
A0A5D3CM35	1.1e-32	85.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2P5BU01	1.5e-24	69.23	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_308860 PE=4 SV...	[more]
A0A2P6RRL4	3.3e-24	63.83	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0117891 PE=4...	[more]
A0A6A1VCF1	1.6e-23	68.89	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G025428 PE=4 SV=1	[more]

BLAST of Tan0003968 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09890.1	8.1e-15	50.62	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	5.6e-08	50.98	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	7.3e-08	40.54	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	2.4e-06	41.43	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	2.4e-06	55.88	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 43..83 e-value: 5.3E-23 score: 80.6
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 2..81
None	No IPR available	PANTHER	PTHR33193:SF41	SUBFAMILY NOT NAMED	coord: 2..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003968.1	Tan0003968.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0009416	response to light stimulus
molecular_function	GO:0004518	nuclease activity