Tan0003886 (gene) Snake gourd v1

Overview


Name	Tan0003886
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	F-box domain-containing protein
Location	LG03: 55273901 .. 55276077 (-)
RNA-Seq Expression	Tan0003886
Synteny	Tan0003886

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCAATATCTTCAACCTCCTCCATTTCCGCCGCCGTCTCCGCCGCCGTGGGAGGTGCTTCTTCTCGTTGCCGAACGCCTCGACCCAAAAACCCTCGCCACCGCCTCCTGCGTCTGCAAATCCTGGTCCATTTCCATGGCCTCCGACCATCTTTGGGAGCCAATTTTTACTGCCAATTTCACTTCTCTCTCTAACCTCGCCGTCTCCTCCGCCGCCACGTCACCATCTGTCTCCTTCCGCCGCCTCTTCGGCCTCGGCCACACCGCTGCAGCTCGTCGCCGTCCTGCTACCTTGAAACCCACCCTCTCCCTCTCTGACCTCGTCTTCGTCATCAGCATCTCCGACAAAGATCGTTGTGTTGTCAGAGGCGGAGCGAAGACGGAAGAGAAGGGTAATTCCTCCTCTTTTAAAATTATTTTGGTCTTTTAACTTGTTTTGTTCAATTAACTTTTCAAAAGGTATTTTTTCTTTTAAAAAAAAAAAAGAAATTTCGCAAAAGGTCTATTTTCTGGGAGAAATTACAGCGGTCGACAATTTTTCACTCAGATAGGGAGGGGGATTATTAGAGGCATGAAAATTATTAAATCTAAATGAACGGTTATTACGAAAGTAACTTTGAATAATTTCTCTTTTTTTTTTAAGCTTGTGGGGGAAAAAACTAATCATTTTTGGTAATTATCTCAATGGCTATTTTAATATAGAATTTTTAGAAGCAATCATTTTTATCTTAATATTAGCCTACTCAGTACTCATCCTCTAACTAAAATTTTGAATAATACGTCTCGATAATAATATGCTAGTACATATGATTGATGCTGCATTATTAATCATATTTTATAGGTTAAATTACAAATTTGGTTCAAGTTAGAATTTACCTCATTTTGGTGAATACAATTAGATAAAAATAAAGTATTTCCTATTTTGTAAGATTTTCATCAAACATTCTTACGAGTGGGGATCTAGAATTTTTATCGAGTAGCTCCAACAAGCTGGATACATACTAACCACTAAGCTAAAATAGCTTTTTTTTTTTGTGTTTATATTTGATTTTTTCTATACTAGTCCCTGCGCCTTAACTAAATTCGCCGTTGAATTCCAACTTTCGTCATTTTTTTTGGTACCTCAGTCTACTCTCTACAATTAGACAAAAAAAAAGTCTTCCTTTTTTTAGAATTCTCATCAAAGACTAATTCTAACCTCTAAAATGGAAAATGGACTACATTTTAACGGGTCGTCGAATATTTTGTTTTTTTAACTCTTTAGGTTAAAGAATCAAAATCTAATAATTTTTCATTTTCGGTAACTATATTAGAAGTATACTATAATTTGTATGAATAATAAATAGTAAACAACCATTCGTTGAGGAGTCCATTTGAATTTGAATACATGTATGTTAGTACATATATTTGGAGTTGCATTATCAATATTTTAAAGCATGATAAAGTTTATAACCAAAAAGTGTTAGTACATACATGTTTTTTTTTTTTGGGTACTGAGAAGTGTTTTTTTAAAAAAATTATTTTCGGGGGTTTGGAGACCAAAAGTGATTACTCTTTGAAAGTTTATAAACCAAATGTAATGTTGCTGGGACATTTATGGACCAAAATTGAAATCAAACCTTTTAAATCTTTCATTTTTCTAATTTATTCTCTCTATAATTTTAGAATTAACATATAATTCTGTTTGTATCAAAATTTCTAGCTCTATCCCAACCCATCCTCACCGCCGTGAAGCACGGCAGCGAGCTACCCGTGGACCGAAACGGGCTGTTCAAATTCGACATAAATCTCATCGACGACAAGAGCGGTATCGATCCGGTGGTGATCGGAGGGAGAGACGAGGTGGTGGTGGTGTGGAACGTGGTGTTGGAAGGGTGGAGGGCGGTTTTTACAATGATTGAATGTGGAGGAAGAGTGGGGATGGCTCCAAGAGCCGACGGGTGGTTCTCGGAGGAGCTGCCGGCGGCGGGGTGCTGTCCGAACGCCGTGAGCGGCGGAGTAGTGGCGGATCTGAAACTGGGGCTGTGTAGAAATGGAGAAAATAAGGTAAGGATTGAAAGTGTGAGTGTGGGAATGATGAGTGTTGTGAGTTGGAGATATGTGGGTTTGGATGATGGGCTAATGTACTTGCAACATTTTTTGTTCAATGCAAATGGTCTAATGTCTAATGTCTAA

mRNA sequence

ATGGCGCAATATCTTCAACCTCCTCCATTTCCGCCGCCGTCTCCGCCGCCGTGGGAGGTGCTTCTTCTCGTTGCCGAACGCCTCGACCCAAAAACCCTCGCCACCGCCTCCTGCGTCTGCAAATCCTGGTCCATTTCCATGGCCTCCGACCATCTTTGGGAGCCAATTTTTACTGCCAATTTCACTTCTCTCTCTAACCTCGCCGTCTCCTCCGCCGCCACGTCACCATCTGTCTCCTTCCGCCGCCTCTTCGGCCTCGGCCACACCGCTGCAGCTCGTCGCCGTCCTGCTACCTTGAAACCCACCCTCTCCCTCTCTGACCTCGTCTTCGTCATCAGCATCTCCGACAAAGATCGTTGTGTTGTCAGAGGCGGAGCGAAGACGGAAGAGAAGGCTCTATCCCAACCCATCCTCACCGCCGTGAAGCACGGCAGCGAGCTACCCGTGGACCGAAACGGGCTGTTCAAATTCGACATAAATCTCATCGACGACAAGAGCGGTATCGATCCGGTGGTGATCGGAGGGAGAGACGAGGTGGTGGTGGTGTGGAACGTGGTGTTGGAAGGGTGGAGGGCGGTTTTTACAATGATTGAATGTGGAGGAAGAGTGGGGATGGCTCCAAGAGCCGACGGGTGGTTCTCGGAGGAGCTGCCGGCGGCGGGGTGCTGTCCGAACGCCGTGAGCGGCGGAGTAGTGGCGGATCTGAAACTGGGGCTGTGTAGAAATGGAGAAAATAAGGTAAGGATTGAAAGTGTGAGTGTGGGAATGATGAGTGTTGTGAGTTGGAGATATGTGGGTTTGGATGATGGGCTAATGTACTTGCAACATTTTTTGTTCAATGCAAATGGTCTAATGTCTAATGTCTAA

Coding sequence (CDS)

ATGGCGCAATATCTTCAACCTCCTCCATTTCCGCCGCCGTCTCCGCCGCCGTGGGAGGTGCTTCTTCTCGTTGCCGAACGCCTCGACCCAAAAACCCTCGCCACCGCCTCCTGCGTCTGCAAATCCTGGTCCATTTCCATGGCCTCCGACCATCTTTGGGAGCCAATTTTTACTGCCAATTTCACTTCTCTCTCTAACCTCGCCGTCTCCTCCGCCGCCACGTCACCATCTGTCTCCTTCCGCCGCCTCTTCGGCCTCGGCCACACCGCTGCAGCTCGTCGCCGTCCTGCTACCTTGAAACCCACCCTCTCCCTCTCTGACCTCGTCTTCGTCATCAGCATCTCCGACAAAGATCGTTGTGTTGTCAGAGGCGGAGCGAAGACGGAAGAGAAGGCTCTATCCCAACCCATCCTCACCGCCGTGAAGCACGGCAGCGAGCTACCCGTGGACCGAAACGGGCTGTTCAAATTCGACATAAATCTCATCGACGACAAGAGCGGTATCGATCCGGTGGTGATCGGAGGGAGAGACGAGGTGGTGGTGGTGTGGAACGTGGTGTTGGAAGGGTGGAGGGCGGTTTTTACAATGATTGAATGTGGAGGAAGAGTGGGGATGGCTCCAAGAGCCGACGGGTGGTTCTCGGAGGAGCTGCCGGCGGCGGGGTGCTGTCCGAACGCCGTGAGCGGCGGAGTAGTGGCGGATCTGAAACTGGGGCTGTGTAGAAATGGAGAAAATAAGGTAAGGATTGAAAGTGTGAGTGTGGGAATGATGAGTGTTGTGAGTTGGAGATATGTGGGTTTGGATGATGGGCTAATGTACTTGCAACATTTTTTGTTCAATGCAAATGGTCTAATGTCTAATGTCTAA

Protein sequence

MAQYLQPPPFPPPSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFTSLSNLAVSSAATSPSVSFRRLFGLGHTAAARRRPATLKPTLSLSDLVFVISISDKDRCVVRGGAKTEEKALSQPILTAVKHGSELPVDRNGLFKFDINLIDDKSGIDPVVIGGRDEVVVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGVVADLKLGLCRNGENKVRIESVSVGMMSVVSWRYVGLDDGLMYLQHFLFNANGLMSNV

Homology

[Close]

BLAST of Tan0003886 vs. ExPASy Swiss-Prot
Match: Q5EAF6 (Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-21
Identity = 81/269 (30.11%), Postives = 124/269 (46.10%), Query Frame = 0


Query: 13  PSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFTSLSNLAVSSA 72
           PSPP WE+L LV   +DP++LA ASCV  +WS   +S+ LW+ +     +  +       
Sbjct: 50  PSPPSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRHSIFAKAITKEG 109

Query: 73  ATSPSVSFRRLFGLGHTAAARRR---PATLKPTLSLSDLVFVISISDKDRCVVRGGAKTE 132
           A    +S++RL     +AA RRR   PA  +P +SLSDLVF++ +S         G+K  
Sbjct: 110 AKPAWLSYKRLISEAESAAKRRRNNQPA--EPKISLSDLVFIVHVS--------AGSKE- 169

Query: 133 EKALSQPILTAVKHGSELPVDRNGLFKFDINLIDDKSGIDPVVIGGRDEVVVVWNVVLEG 192
                      VK G +L    N  F+ + ++ D     D        +V + WNVVL  
Sbjct: 170 --------AVVVKQGKDLVFGSNERFQIEADVRDSGFTAD------MKDVSMSWNVVLRN 229

Query: 193 WRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGVVADLKLGLCRNGENKVRI 252
           +  +F M E    +       GWF++ELP      N    G      +G  +   N+  +
Sbjct: 230 YERMFLMSET--VIKSLDSMIGWFTDELPGT---KNRYCDG---SNLVGEVKPSFNEDVL 285

Query: 253 ESVSVGMMSVVSWRYVGLDDGLMYLQHFL 279
           + V   +    +W+ + +DD L YLQ FL
Sbjct: 290 DKVVFAIADSRNWKSLFVDDVLRYLQCFL 285

[Close]

BLAST of Tan0003886 vs. NCBI nr
Match: XP_022925168.1 (probable F-box protein At5g04010 [Cucurbita moschata])

HSP 1 Score: 434.1 bits (1115), Expect = 9.4e-118
Identity = 223/287 (77.70%), Postives = 243/287 (84.67%), Query Frame = 0


Query: 1   MAQYLQPPPFPPPSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTAN 60
           MAQ LQ    PPPSPPPWEVLLLVAERLDP+TLATASCVCKSWSISMAS++LWEPIF+A 
Sbjct: 1   MAQSLQ----PPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAK 60

Query: 61  FTSLSNLAVSSAATSPSVSFRRLFGLGHTAAARRRPATLKPTLSLSDLVFVISISDKDR- 120
           F SL+NLA SSA TSP VSFRRLFGLGHTAAARRRPA  KP LSLSDLVFVIS+S  D+ 
Sbjct: 61  FPSLTNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKA 120

Query: 121 --CVVRGGAKTEEKALSQPILTAVKHGSELPVDRNGLFKFDINLIDDKSGIDPVVIGGRD 180
             C+V GG K EEK + +P+ T VKHG EL VDRN LFKFDIN+    +G + VVIG  +
Sbjct: 121 NGCIVSGGTKKEEKDVPEPMFTVVKHGGELAVDRNRLFKFDINV---SNGDEVVVIGAGE 180

Query: 181 EVVVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGVVADLKL 240
           EV VVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGG+VADLKL
Sbjct: 181 EVEVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKL 240

Query: 241 GLCRNGE----NKVRIESVSVGMMSVVSWRYVGLDDGLMYLQHFLFN 281
           G+C+NGE    +KVRIESVSVGMMSV+SWRYV LDDGLMYLQHFLFN
Sbjct: 241 GVCKNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of Tan0003886 vs. NCBI nr
Match: XP_023518459.1 (probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 433.3 bits (1113), Expect = 1.6e-117
Identity = 225/287 (78.40%), Postives = 244/287 (85.02%), Query Frame = 0


Query: 1   MAQYLQPPPFPPPSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTAN 60
           MAQ LQ    PPPSPPPWEVLLLVAERLDP+TLATASCVCKSWSISMAS++LWEPIF+A 
Sbjct: 1   MAQSLQ----PPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAK 60

Query: 61  FTSLSNLAVSSAATSPSVSFRRLFGLGHTAAARRRPATLKPTLSLSDLVFVISIS--DK- 120
           F SL+NLA SSA TSP VSFRRLFGLGHTAAARRRPA  KP L LSDLVFVIS+S  DK 
Sbjct: 61  FPSLTNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILCLSDLVFVISVSSTDKA 120

Query: 121 DRCVVRGGAKTEEKALSQPILTAVKHGSELPVDRNGLFKFDINLIDDKSGIDPVVIGGRD 180
           DRC+V  GAK EEK + +P+ T VKHG EL VDRNGLFKFDIN+    +  + VVIG  +
Sbjct: 121 DRCIVGAGAKKEEKDVPEPMFTVVKHGGELAVDRNGLFKFDINV---SNSDEVVVIGAGE 180

Query: 181 EVVVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGVVADLKL 240
           EV VVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGG+VADLKL
Sbjct: 181 EVGVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKL 240

Query: 241 GLCRNGE----NKVRIESVSVGMMSVVSWRYVGLDDGLMYLQHFLFN 281
           G+C+NGE    +KVRIESVSVGMMSV+SWRYV LDDGLMYLQHFLFN
Sbjct: 241 GVCKNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of Tan0003886 vs. NCBI nr
Match: XP_038883618.1 (probable F-box protein At5g04010 [Benincasa hispida])

HSP 1 Score: 426.8 bits (1096), Expect = 1.5e-115
Identity = 227/282 (80.50%), Postives = 239/282 (84.75%), Query Frame = 0


Query: 8   PPFPP-PSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFTSLSN 67
           PP P   SPPPWEVLLLVAERLDPKTLATASCVCK WSISMASDHLWEPIFTANF SLSN
Sbjct: 3   PPLPSLSSPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPSLSN 62

Query: 68  LAVSSAA-TSPSVSFRRLFGLGHTAAARRRPATLKPTLSLSDLVFVISIS--DKDRCVVR 127
           LA+SS+A TSP VSFRRLFGLGHTAAARRRPA  KPTLSLSDL+FVISIS  DKDR +V 
Sbjct: 63  LAISSSAPTSPPVSFRRLFGLGHTAAARRRPAPSKPTLSLSDLIFVISISSTDKDRYIVG 122

Query: 128 GGAKTEEKALSQPILTAVKHGSELPVDRNGLFKFDINLIDDKSGI-DPVVIGGRDEVVVV 187
                ++KA  Q ILT VKHG EL VDRNGLFKFDINL  D      PVVIGGR+EV VV
Sbjct: 123 HELVEKDKAPPQSILTVVKHGGELAVDRNGLFKFDINLDGDNGNKGGPVVIGGREEVEVV 182

Query: 188 WNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGVVADLKLGLCRN 247
           WN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCC N VSGG+VADLKLGL  N
Sbjct: 183 WNLVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCSNVVSGGIVADLKLGLRGN 242

Query: 248 --GENKVRIESVSVGMMSVVSWRYVGLDDGLMYLQHFLFNAN 283
             G +KVRIESVSVGMMS+VSWRYV LDDGLMYLQHFLFNA+
Sbjct: 243 NGGGSKVRIESVSVGMMSIVSWRYVSLDDGLMYLQHFLFNAS 284

[Close]

BLAST of Tan0003886 vs. NCBI nr
Match: XP_008449214.1 (PREDICTED: probable F-box protein At5g04010 [Cucumis melo] >KAA0047228.1 putative F-box protein [Cucumis melo var. makuwa] >TYK21759.1 putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 426.4 bits (1095), Expect = 2.0e-115
Identity = 225/283 (79.51%), Postives = 241/283 (85.16%), Query Frame = 0


Query: 6   QPPPFPPPSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFTSLS 65
           QP P    SPPPWEV+LLVAERLDPKTLATASCVCKSWS+SMASDHLWEPIFTANF SL 
Sbjct: 3   QPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLF 62

Query: 66  NLAVSSAATSPSVSFRRLFGLGHTAAARRRPATLKPTLSLSDLVFVISIS--DKDRCVVR 125
           NLA S+  +SP VSFRRLFGLG+ AAARRRPA LKPTLSLSDLVFVISIS  DKD+ ++ 
Sbjct: 63  NLA-SAPTSSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDKDQSIIA 122

Query: 126 -GGAKTEEKA-LSQPILTAVKHGSELPVDRNGLFKFDINLIDDKSGIDPVVIGGRDEVVV 185
             G   EEKA   Q  LT VKHG ELPV+RNGLFKFDINL  +++G  PVVIG R+EV V
Sbjct: 123 CDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFKFDINL--NENGAAPVVIGAREEVEV 182

Query: 186 VWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGVVADLKLGLCR 245
           VWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGG+V DL+LGLC 
Sbjct: 183 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLRLGLCG 242

Query: 246 N--GENKVRIESVSVGMMSVVSWRYVGLDDGLMYLQHFLFNAN 283
           N  G NKVRIESVSVGMMSVVSWRYV LDDGLMYLQHFLFNAN
Sbjct: 243 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNAN 282

[Close]

BLAST of Tan0003886 vs. NCBI nr
Match: XP_031740421.1 (probable F-box protein At5g04010 [Cucumis sativus] >KAE8649452.1 hypothetical protein Csa_018886 [Cucumis sativus])

HSP 1 Score: 424.9 bits (1091), Expect = 5.7e-115
Identity = 225/283 (79.51%), Postives = 239/283 (84.45%), Query Frame = 0


Query: 6   QPPPFPPPSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFTSLS 65
           QP P    SPPPWEV+LLVAERLDPKTLATASCVCKSWS+SMASDHLWEPIFTANF SL 
Sbjct: 3   QPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLF 62

Query: 66  NLAVSSAATSPSVSFRRLFGLGHTAAARRRPATLKPTLSLSDLVFVISIS--DKDRC-VV 125
           NLA ++ ATSP VSFRRLFGLG+ AAARRRPA  KP+LSLSDLVFVISIS  +KDRC + 
Sbjct: 63  NLA-TAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCSIA 122

Query: 126 RGGAKTEEKA-LSQPILTAVKHGSELPVDRNGLFKFDINLIDDKSGIDPVVIGGRDEVVV 185
             G   EEKA   Q  LT VKHG ELPVDRNGLFKFDINL ++  G  PVVIG R+EV V
Sbjct: 123 CDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGA-PVVIGAREEVEV 182

Query: 186 VWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGVVADLKLGLCR 245
           VWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCCPN VSGG+V DL+LGLC 
Sbjct: 183 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 242

Query: 246 N--GENKVRIESVSVGMMSVVSWRYVGLDDGLMYLQHFLFNAN 283
           N  G NKVRIESVSVGMMSVVSWRYV LDDGLMYLQHFLFNAN
Sbjct: 243 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNAN 283

[Close]

BLAST of Tan0003886 vs. ExPASy TrEMBL
Match: A0A6J1EEG3 (probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 4.5e-118
Identity = 223/287 (77.70%), Postives = 243/287 (84.67%), Query Frame = 0


Query: 1   MAQYLQPPPFPPPSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTAN 60
           MAQ LQ    PPPSPPPWEVLLLVAERLDP+TLATASCVCKSWSISMAS++LWEPIF+A 
Sbjct: 1   MAQSLQ----PPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAK 60

Query: 61  FTSLSNLAVSSAATSPSVSFRRLFGLGHTAAARRRPATLKPTLSLSDLVFVISISDKDR- 120
           F SL+NLA SSA TSP VSFRRLFGLGHTAAARRRPA  KP LSLSDLVFVIS+S  D+ 
Sbjct: 61  FPSLTNLAASSATTSPPVSFRRLFGLGHTAAARRRPAPSKPILSLSDLVFVISVSGTDKA 120

Query: 121 --CVVRGGAKTEEKALSQPILTAVKHGSELPVDRNGLFKFDINLIDDKSGIDPVVIGGRD 180
             C+V GG K EEK + +P+ T VKHG EL VDRN LFKFDIN+    +G + VVIG  +
Sbjct: 121 NGCIVSGGTKKEEKDVPEPMFTVVKHGGELAVDRNRLFKFDINV---SNGDEVVVIGAGE 180

Query: 181 EVVVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGVVADLKL 240
           EV VVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGG+VADLKL
Sbjct: 181 EVEVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKL 240

Query: 241 GLCRNGE----NKVRIESVSVGMMSVVSWRYVGLDDGLMYLQHFLFN 281
           G+C+NGE    +KVRIESVSVGMMSV+SWRYV LDDGLMYLQHFLFN
Sbjct: 241 GVCKNGEGGKNDKVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of Tan0003886 vs. ExPASy TrEMBL
Match: A0A5D3DEJ6 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00070 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 9.5e-116
Identity = 225/283 (79.51%), Postives = 241/283 (85.16%), Query Frame = 0


Query: 6   QPPPFPPPSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFTSLS 65
           QP P    SPPPWEV+LLVAERLDPKTLATASCVCKSWS+SMASDHLWEPIFTANF SL 
Sbjct: 3   QPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLF 62

Query: 66  NLAVSSAATSPSVSFRRLFGLGHTAAARRRPATLKPTLSLSDLVFVISIS--DKDRCVVR 125
           NLA S+  +SP VSFRRLFGLG+ AAARRRPA LKPTLSLSDLVFVISIS  DKD+ ++ 
Sbjct: 63  NLA-SAPTSSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDKDQSIIA 122

Query: 126 -GGAKTEEKA-LSQPILTAVKHGSELPVDRNGLFKFDINLIDDKSGIDPVVIGGRDEVVV 185
             G   EEKA   Q  LT VKHG ELPV+RNGLFKFDINL  +++G  PVVIG R+EV V
Sbjct: 123 CDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFKFDINL--NENGAAPVVIGAREEVEV 182

Query: 186 VWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGVVADLKLGLCR 245
           VWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGG+V DL+LGLC 
Sbjct: 183 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLRLGLCG 242

Query: 246 N--GENKVRIESVSVGMMSVVSWRYVGLDDGLMYLQHFLFNAN 283
           N  G NKVRIESVSVGMMSVVSWRYV LDDGLMYLQHFLFNAN
Sbjct: 243 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNAN 282

[Close]

BLAST of Tan0003886 vs. ExPASy TrEMBL
Match: A0A1S3BLJ1 (probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 9.5e-116
Identity = 225/283 (79.51%), Postives = 241/283 (85.16%), Query Frame = 0


Query: 6   QPPPFPPPSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFTSLS 65
           QP P    SPPPWEV+LLVAERLDPKTLATASCVCKSWS+SMASDHLWEPIFTANF SL 
Sbjct: 3   QPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLF 62

Query: 66  NLAVSSAATSPSVSFRRLFGLGHTAAARRRPATLKPTLSLSDLVFVISIS--DKDRCVVR 125
           NLA S+  +SP VSFRRLFGLG+ AAARRRPA LKPTLSLSDLVFVISIS  DKD+ ++ 
Sbjct: 63  NLA-SAPTSSPPVSFRRLFGLGYIAAARRRPAQLKPTLSLSDLVFVISISFTDKDQSIIA 122

Query: 126 -GGAKTEEKA-LSQPILTAVKHGSELPVDRNGLFKFDINLIDDKSGIDPVVIGGRDEVVV 185
             G   EEKA   Q  LT VKHG ELPV+RNGLFKFDINL  +++G  PVVIG R+EV V
Sbjct: 123 CDGVNKEEKAPRPQSSLTVVKHGEELPVERNGLFKFDINL--NENGAAPVVIGAREEVEV 182

Query: 186 VWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGVVADLKLGLCR 245
           VWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGG+V DL+LGLC 
Sbjct: 183 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGIVGDLRLGLCG 242

Query: 246 N--GENKVRIESVSVGMMSVVSWRYVGLDDGLMYLQHFLFNAN 283
           N  G NKVRIESVSVGMMSVVSWRYV LDDGLMYLQHFLFNAN
Sbjct: 243 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNAN 282

[Close]

BLAST of Tan0003886 vs. ExPASy TrEMBL
Match: A0A6J1HMX9 (probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.8e-115
Identity = 219/287 (76.31%), Postives = 239/287 (83.28%), Query Frame = 0


Query: 1   MAQYLQPPPFPPPSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTAN 60
           MAQ LQ    PPPSPPPWEVLLLVAERLDP+TLATASCVCKSWSISMAS+HLWEPIF+A 
Sbjct: 1   MAQSLQ----PPPSPPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWEPIFSAK 60

Query: 61  FTSLSNLAVSSAATSPSVSFRRLFGLGHTAAARRRPATLKPTLSLSDLVFVISISDKDR- 120
           F SL+NLA SSA  SP +SF RLFGLGHTAAARRRPA  KP LSLSDL+FVIS+S  D+ 
Sbjct: 61  FPSLTNLAASSATASPPLSFCRLFGLGHTAAARRRPAPSKPILSLSDLIFVISVSGTDKA 120

Query: 121 --CVVRGGAKTEEKALSQPILTAVKHGSELPVDRNGLFKFDINLIDDKSGIDPVVIGGRD 180
             C+V GGA  EEK + + + T VKHG EL VDRNGLFKFDIN+     G + VVIG   
Sbjct: 121 DGCIVGGGATKEEKDVPELMFTIVKHGGELVVDRNGLFKFDINV---SKGDEAVVIGAGG 180

Query: 181 EVVVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGVVADLKL 240
           EV VVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCP  VSGG+VADLKL
Sbjct: 181 EVEVVWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPKEVSGGIVADLKL 240

Query: 241 GLCRNGE----NKVRIESVSVGMMSVVSWRYVGLDDGLMYLQHFLFN 281
           G+C+NGE    ++VRIESVSVGMMSV+SWRYV LDDGLMYLQHFLFN
Sbjct: 241 GVCKNGEGGKNDEVRIESVSVGMMSVLSWRYVSLDDGLMYLQHFLFN 280

[Close]

BLAST of Tan0003886 vs. ExPASy TrEMBL
Match: A0A0A0LDE5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.8e-115
Identity = 225/283 (79.51%), Postives = 239/283 (84.45%), Query Frame = 0


Query: 6   QPPPFPPPSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFTSLS 65
           QP P    SPPPWEV+LLVAERLDPKTLATASCVCKSWS+SMASDHLWEPIFTANF SL 
Sbjct: 3   QPLPSLSSSPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLF 62

Query: 66  NLAVSSAATSPSVSFRRLFGLGHTAAARRRPATLKPTLSLSDLVFVISIS--DKDRC-VV 125
           NLA ++ ATSP VSFRRLFGLG+ AAARRRPA  KP+LSLSDLVFVISIS  +KDRC + 
Sbjct: 63  NLA-TAPATSPHVSFRRLFGLGYIAAARRRPAQSKPSLSLSDLVFVISISFTNKDRCSIA 122

Query: 126 RGGAKTEEKA-LSQPILTAVKHGSELPVDRNGLFKFDINLIDDKSGIDPVVIGGRDEVVV 185
             G   EEKA   Q  LT VKHG ELPVDRNGLFKFDINL ++  G  PVVIG R+EV V
Sbjct: 123 CDGVNKEEKAPRPQSSLTIVKHGEELPVDRNGLFKFDINLNENGDGA-PVVIGAREEVEV 182

Query: 186 VWNVVLEGWRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGVVADLKLGLCR 245
           VWN+VLEGWR VFTMIECGGRVGMAPRADGWFSEELPAAGCCPN VSGG+V DL+LGLC 
Sbjct: 183 VWNIVLEGWRGVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNVVSGGIVGDLRLGLCG 242

Query: 246 N--GENKVRIESVSVGMMSVVSWRYVGLDDGLMYLQHFLFNAN 283
           N  G NKVRIESVSVGMMSVVSWRYV LDDGLMYLQHFLFNAN
Sbjct: 243 NGGGSNKVRIESVSVGMMSVVSWRYVSLDDGLMYLQHFLFNAN 283

[Close]

BLAST of Tan0003886 vs. TAIR 10
Match: AT5G04010.1 (F-box family protein )

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-22
Identity = 81/269 (30.11%), Postives = 124/269 (46.10%), Query Frame = 0


Query: 13  PSPPPWEVLLLVAERLDPKTLATASCVCKSWSISMASDHLWEPIFTANFTSLSNLAVSSA 72
           PSPP WE+L LV   +DP++LA ASCV  +WS   +S+ LW+ +     +  +       
Sbjct: 50  PSPPSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRHSIFAKAITKEG 109

Query: 73  ATSPSVSFRRLFGLGHTAAARRR---PATLKPTLSLSDLVFVISISDKDRCVVRGGAKTE 132
           A    +S++RL     +AA RRR   PA  +P +SLSDLVF++ +S         G+K  
Sbjct: 110 AKPAWLSYKRLISEAESAAKRRRNNQPA--EPKISLSDLVFIVHVS--------AGSKE- 169

Query: 133 EKALSQPILTAVKHGSELPVDRNGLFKFDINLIDDKSGIDPVVIGGRDEVVVVWNVVLEG 192
                      VK G +L    N  F+ + ++ D     D        +V + WNVVL  
Sbjct: 170 --------AVVVKQGKDLVFGSNERFQIEADVRDSGFTAD------MKDVSMSWNVVLRN 229

Query: 193 WRAVFTMIECGGRVGMAPRADGWFSEELPAAGCCPNAVSGGVVADLKLGLCRNGENKVRI 252
           +  +F M E    +       GWF++ELP      N    G      +G  +   N+  +
Sbjct: 230 YERMFLMSET--VIKSLDSMIGWFTDELPGT---KNRYCDG---SNLVGEVKPSFNEDVL 285

Query: 253 ESVSVGMMSVVSWRYVGLDDGLMYLQHFL 279
           + V   +    +W+ + +DD L YLQ FL
Sbjct: 290 DKVVFAIADSRNWKSLFVDDVLRYLQCFL 285

The following BLAST results are available for this feature:

BLAST of Tan0003886 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5EAF6	1.7e-21	30.11	Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 S...	[more]

BLAST of Tan0003886 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925168.1	9.4e-118	77.70	probable F-box protein At5g04010 [Cucurbita moschata]	[more]
XP_023518459.1	1.6e-117	78.40	probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo]	[more]
XP_038883618.1	1.5e-115	80.50	probable F-box protein At5g04010 [Benincasa hispida]	[more]
XP_008449214.1	2.0e-115	79.51	PREDICTED: probable F-box protein At5g04010 [Cucumis melo] >KAA0047228.1 putativ...	[more]
XP_031740421.1	5.7e-115	79.51	probable F-box protein At5g04010 [Cucumis sativus] >KAE8649452.1 hypothetical pr...	[more]

BLAST of Tan0003886 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEG3	4.5e-118	77.70	probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 P...	[more]
A0A5D3DEJ6	9.5e-116	79.51	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S3BLJ1	9.5e-116	79.51	probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV...	[more]
A0A6J1HMX9	2.8e-115	76.31	probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=...	[more]
A0A0A0LDE5	2.8e-115	79.51	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 ...	[more]

BLAST of Tan0003886 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04010.1	1.2e-22	30.11	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 17..56 e-value: 2.8E-6 score: 27.0
None	No IPR available	GENE3D	1.20.1280.50		coord: 15..91 e-value: 6.6E-8 score: 34.4
None	No IPR available	PANTHER	PTHR12874:SF16	F-BOX PROTEIN	coord: 12..267
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 12..267
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 17..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003886.1	Tan0003886.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding