Tan0003815 (gene) Snake gourd v1

Overview


Name	Tan0003815
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	F-box protein
Location	LG03: 77798494 .. 77801147 (-)
RNA-Seq Expression	Tan0003815
Synteny	Tan0003815

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAAATTCCAGCGGATTCTGTAAAGCGCGTGGGATATTAAAAAAATTAAAAAAGAAAAAAACTTTTTGATTATTTTTAATTTTTGAAAAGTGAGAAACTCTATCTTTTTCCACTAATATATAAGACAGAATATCGACAATTTTAAAGCAACTCCGTAGTTTGCTGAGTTTCCATTTTAAGAGCAAAAGCTTTCTTTGAAATTGAAACAGAAACAGAGAGAGAGAGGGAGCGAGAGATATTCGAATATCTACGGCAATCCACAATCAGGTTCGTTTCGCTACGGATTCAAATTTAGATTTCTTCCTTATTCGACATTCTCAGTCTGCTTTTGGAAATTGTTCTCGGAAAAAAGCTGTTTTGCTTTGATCAGATTTTTGTTAGGGTTCTTGAAGCTCTTTGAATCTCTTATCTATGGATTCGTTTCCATCTTAATGATTGATGTTTGTTTTTTTCTTCTCGCCTTGATACAGATAACCTAATAGGTTTAATTTAATTCCATTATTGAGAATTGACAATGGCGTTGGGGAAGAAGAGCGGTTGTTTGAAATCGAAAAGCGTCGTCTCTGCTGCCGATAAAGGACTGGATTTCGGAGTTGTGAGATATACGCGTGGTTTAGGAAGGAAACGGATTGTGATTTCTTGCAATGAGGAGGATTCGTCTACCGACTTGACGCCGAAGGCACCGTCGAAGAGGCGCTGCAGCGCCATCAATACGACGGTGGACGCCGATATGTCTCTGCTCGAGGCCCTGCCTCAGGAGATTCTGGTTAGTACAAACTTCCATTGATTGAAATTGCTTCCAAATTGTTAAATCTTCGCATTCGGTTCCTCTTTCGACTGTTGTTTCTAAATTGAATTTCCCCCTTTTTCCCTCTCCATCAGATTAGGATTCTCTGCGGTGTGGAACATGATGATTTGAAACAGCTAATCCGCGTTTCGAAAACAATTAACGAAGCGGTAAATATCACTCGCATCATAATTCACTTCATTTGTTTCCATTCTTTTCCTCCAATGATTCTCATTGATTTAGGGTTTCAATTTCATTTACAGACTTTGATTGCAAAAGAATTGCATTTCGCGTACAGCACTCCCTCAAAGGTCCGTGCATTTCGCACCGCCATTGAATTCGACAATTCCAGCGATCTCGACGAGATTGAAGCCCCAAATGCTCCTCCCACAAGACGATTTAGGTCTCCATTAAACAGAAAGAAGCTCGCGGACATTTCGGTGGCCTTATTCGCAGAAGAAGACCAATGGCCAAAGAAAAAGTTGCCCATTGAGACAGAGATATGAATTATAACCCAGAGGACTGTGTAAATACATCTGTGTTATGTTGTTGTAGAAATACACCATTGCTGGTAGGAAGAAAGAAACGGGTCTGAAAATCTCAGATCCTGCTTGAAGCTGTACATGTCCGGACATTTTCACTGACCAATTCTTCAAATCTTTCATTGAAGATGAAGATGGGTAGGTTAGAAAACGAATGCATCTCTTTTATTTTGTACATGTATTACAGAGACAGACTGATGATAGGTAGAAAATTCGTTATTCGTTTACGTTTACCTTTACAAGGGTAGCATTTTGGTTTAATCTCTCTCTCTCTGATACTATGGCTCTCATTCATTCTCTGTCTAATAAAAACGAACCATATTTTCCTCGCAATTTTGTGTGACTATTTACAACATGTTCTGCTTTTGCCTACGTTTTTTGTTTTTTACCTTCCACATTGTATTGCTTGATAGCTAGCGCAGTTGTGGCATTGTTTGTTAAACTCTGCCACTAGCTTTTTCACTATAACAGCCGGAAGAATAGCTCGTACATAACTAACCTATGCTTGTTTTGATTCCATTTTGAATGATTTTCCATAATTGATCAAATGGGCTTGTGGGTTTTTTCTTTTTCCTTTTTGGTGGTGTGTGACGAAATGATCTGTAACGTATGAAAGCAGAAAAAAAAAACGAAGCAGAATTTGGAAACAGAATTAGAAATTATCAGAAGCCTCGACTCGACTTTGATGACAGCTGTTGGTTGTGCTTTTCACTCGCCGAAAGGAGTATGAATTCCTAATTACATGTGGAAATGCTTAAGTACAAGCTGGACTGATGAACTGGCAACCCTGAAATTTCGTCTCTTTGAAGCTTTCAGTTTCAGTTTCATTTCTTCTTGTTCTTCAAATAAGCTAGAAATGAGGATGAAATTTTGAAGTTGTTAAACTATACTCAAAATGACAGATTTTCATCATGGATATGCCATTAATGAGTTGTGGATTGGATTCATTCAAGGACTCATTTCTCTTTTATGCTAAATTTCACACCAAAAAATGGGAAGCTCCTTGTATCCATGTCTCAGGACAGTATTACAAATTACTCAAGCTTGTTTAACTTTTGAAAACAGTCCTCATTCGCCTTAATTCATGTAATTCTATTAGAATGAATGCTAATTAAATTGCTAAGTGTTGAACATTAAGTCAAATGTTATAATATGGCGTAATTGGTTGGATTCCAGTTGTATAAGTATTGATTTCCAGATGGACAACACAGAAGCATTGAACAGAAAAAGCAACAAGATCTTTAAGAAAATCAACCCAAGTATTTATCTATTTCGTGTATTAGATACTGTACAAGGTGTAGATCTTGATATAATAATAATGATG

mRNA sequence

CGAAAATTCCAGCGGATTCTGTAAAGCGCGTGGGATATTAAAAAAATTAAAAAAGAAAAAAACTTTTTGATTATTTTTAATTTTTGAAAAGTGAGAAACTCTATCTTTTTCCACTAATATATAAGACAGAATATCGACAATTTTAAAGCAACTCCGTAGTTTGCTGAGTTTCCATTTTAAGAGCAAAAGCTTTCTTTGAAATTGAAACAGAAACAGAGAGAGAGAGGGAGCGAGAGATATTCGAATATCTACGGCAATCCACAATCAGATAACCTAATAGGTTTAATTTAATTCCATTATTGAGAATTGACAATGGCGTTGGGGAAGAAGAGCGGTTGTTTGAAATCGAAAAGCGTCGTCTCTGCTGCCGATAAAGGACTGGATTTCGGAGTTGTGAGATATACGCGTGGTTTAGGAAGGAAACGGATTGTGATTTCTTGCAATGAGGAGGATTCGTCTACCGACTTGACGCCGAAGGCACCGTCGAAGAGGCGCTGCAGCGCCATCAATACGACGGTGGACGCCGATATGTCTCTGCTCGAGGCCCTGCCTCAGGAGATTCTGATTAGGATTCTCTGCGGTGTGGAACATGATGATTTGAAACAGCTAATCCGCGTTTCGAAAACAATTAACGAAGCGACTTTGATTGCAAAAGAATTGCATTTCGCGTACAGCACTCCCTCAAAGGTCCGTGCATTTCGCACCGCCATTGAATTCGACAATTCCAGCGATCTCGACGAGATTGAAGCCCCAAATGCTCCTCCCACAAGACGATTTAGGTCTCCATTAAACAGAAAGAAGCTCGCGGACATTTCGGTGGCCTTATTCGCAGAAGAAGACCAATGGCCAAAGAAAAAGTTGCCCATTGAGACAGAGATATGAATTATAACCCAGAGGACTGTGTAAATACATCTGTGTTATGTTGTTGTAGAAATACACCATTGCTGGTAGGAAGAAAGAAACGGGTCTGAAAATCTCAGATCCTGCTTGAAGCTGTACATGTCCGGACATTTTCACTGACCAATTCTTCAAATCTTTCATTGAAGATGAAGATGGGTAGGTTAGAAAACGAATGCATCTCTTTTATTTTGTACATGTATTACAGAGACAGACTGATGATAGGTAGAAAATTCGTTATTCGTTTACGTTTACCTTTACAAGGGTAGCATTTTGGTTTAATCTCTCTCTCTCTGATACTATGGCTCTCATTCATTCTCTGTCTAATAAAAACGAACCATATTTTCCTCGCAATTTTGTGTGACTATTTACAACATGTTCTGCTTTTGCCTACGTTTTTTGTTTTTTACCTTCCACATTGTATTGCTTGATAGCTAGCGCAGTTGTGGCATTGTTTGTTAAACTCTGCCACTAGCTTTTTCACTATAACAGCCGGAAGAATAGCTCGTACATAACTAACCTATGCTTGTTTTGATTCCATTTTGAATGATTTTCCATAATTGATCAAATGGGCTTGTGGGTTTTTTCTTTTTCCTTTTTGGTGGTGTGTGACGAAATGATCTGTAACGTATGAAAGCAGAAAAAAAAAACGAAGCAGAATTTGGAAACAGAATTAGAAATTATCAGAAGCCTCGACTCGACTTTGATGACAGCTGTTGGTTGTGCTTTTCACTCGCCGAAAGGAGTATGAATTCCTAATTACATGTGGAAATGCTTAAGTACAAGCTGGACTGATGAACTGGCAACCCTGAAATTTCGTCTCTTTGAAGCTTTCAGTTTCAGTTTCATTTCTTCTTGTTCTTCAAATAAGCTAGAAATGAGGATGAAATTTTGAAGTTGTTAAACTATACTCAAAATGACAGATTTTCATCATGGATATGCCATTAATGAGTTGTGGATTGGATTCATTCAAGGACTCATTTCTCTTTTATGCTAAATTTCACACCAAAAAATGGGAAGCTCCTTGTATCCATGTCTCAGGACAGTATTACAAATTACTCAAGCTTGTTTAACTTTTGAAAACAGTCCTCATTCGCCTTAATTCATGTAATTCTATTAGAATGAATGCTAATTAAATTGCTAAGTGTTGAACATTAAGTCAAATGTTATAATATGGCGTAATTGGTTGGATTCCAGTTGTATAAGTATTGATTTCCAGATGGACAACACAGAAGCATTGAACAGAAAAAGCAACAAGATCTTTAAGAAAATCAACCCAAGTATTTATCTATTTCGTGTATTAGATACTGTACAAGGTGTAGATCTTGATATAATAATAATGATG

Coding sequence (CDS)

ATGGCGTTGGGGAAGAAGAGCGGTTGTTTGAAATCGAAAAGCGTCGTCTCTGCTGCCGATAAAGGACTGGATTTCGGAGTTGTGAGATATACGCGTGGTTTAGGAAGGAAACGGATTGTGATTTCTTGCAATGAGGAGGATTCGTCTACCGACTTGACGCCGAAGGCACCGTCGAAGAGGCGCTGCAGCGCCATCAATACGACGGTGGACGCCGATATGTCTCTGCTCGAGGCCCTGCCTCAGGAGATTCTGATTAGGATTCTCTGCGGTGTGGAACATGATGATTTGAAACAGCTAATCCGCGTTTCGAAAACAATTAACGAAGCGACTTTGATTGCAAAAGAATTGCATTTCGCGTACAGCACTCCCTCAAAGGTCCGTGCATTTCGCACCGCCATTGAATTCGACAATTCCAGCGATCTCGACGAGATTGAAGCCCCAAATGCTCCTCCCACAAGACGATTTAGGTCTCCATTAAACAGAAAGAAGCTCGCGGACATTTCGGTGGCCTTATTCGCAGAAGAAGACCAATGGCCAAAGAAAAAGTTGCCCATTGAGACAGAGATATGA

Protein sequence

MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPKAPSKRRCSAINTTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLIAKELHFAYSTPSKVRAFRTAIEFDNSSDLDEIEAPNAPPTRRFRSPLNRKKLADISVALFAEEDQWPKKKLPIETEI

Homology

[Close]

BLAST of Tan0003815 vs. ExPASy Swiss-Prot
Match: O65416 (F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 2.9e-30
Identity = 82/191 (42.93%), Postives = 117/191 (61.26%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGV--VRYTRGLGRKRIVI-SCNEEDSSTDLTP--- 60
           MAL K+   + S +     ++ L+ G+  VR+TRGLGRKRI+I SC  E  S        
Sbjct: 34  MALSKRGFVMTSNARFHGEEEELELGLGSVRFTRGLGRKRILISSCVRESLSRSAVEIPV 93

Query: 61  -------KAPSKRRCSAIN--TTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKT 120
                  K+  KR+ S I   ++  ++ S LE LPQ++LIR++CGV+H+DLK L  VSK+
Sbjct: 94  VSESPPVKSSLKRQRSRITIVSSSSSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSKS 153

Query: 121 INEATLIAKELHFAYSTPSKVRAFRTAIEFDNSSDL----DEIEAPNAPPTRRFRSPLNR 173
           I EA+L+AK LHFAY+TP K RAFR +I+ +  SD     D+IE PNAP   R+     +
Sbjct: 154 IREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKRK 213

[Close]

BLAST of Tan0003815 vs. ExPASy Swiss-Prot
Match: Q8GX77 (F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.5e-29
Identity = 87/185 (47.03%), Postives = 107/185 (57.84%), Query Frame = 0


Query: 1   MALGKK-----SGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPK 60
           MALGKK        L+ +  V     GL    V+Y RG GRKRI+IS  +E   +  T  
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60

Query: 61  APSKRRCSAINTTVDADMSL-LEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLIAK 120
              K+ C    T+V    S  LE LP +IL+RI+CGVEH+DLKQL  VSKTI EAT+IAK
Sbjct: 61  V-GKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMIAK 120

Query: 121 ELHFAYSTPSKVRAFRTA-----IEFDNSSDLDEIEAPNAPPTRRFR-SPLNRKK-LADI 173
           + HFAYSTP K   F          FD   D +EIEAP AP  +R+R S +NR K  + +
Sbjct: 121 QSHFAYSTPRKTSVFHHGRFGWDKPFDVEDDDEEIEAPGAPLQKRYRLSRINRNKDDSGV 180

[Close]

BLAST of Tan0003815 vs. ExPASy Swiss-Prot
Match: Q9S9T6 (F-box protein At4g05010 OS=Arabidopsis thaliana OX=3702 GN=At4g05010 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-24
Identity = 75/156 (48.08%), Postives = 98/156 (62.82%), Query Frame = 0


Query: 23  LDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPKAPSKRRCSAINTTVDADMSLLEALPQE 82
           L  G VR+TRGLGRKRI+IS    ++       +P  +R S  + T ++  SLLE L Q+
Sbjct: 19  LGLGFVRFTRGLGRKRILISKRAPEND------SPPVKRPS--HETTESCRSLLETLHQD 78

Query: 83  ILIRILCGVEHDDLKQLIRVSKTINEATLIAKELHFAYSTPSKVRAFRTAI-----EFDN 142
           ILIR+LC V+H+DL  L RVSKTI +A + AK+ HF YSTP K   FR AI       ++
Sbjct: 79  ILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNSNS 138

Query: 143 SSDLDEIEAPNAPPTRRFRSPLNRKK-LADISVALF 173
           SS  DE+E PNAP  RRF   +NR+  L+ IS+ LF
Sbjct: 139 SSQDDEMEPPNAPIRRRF---INRESDLSKISMVLF 163

[Close]

BLAST of Tan0003815 vs. ExPASy Swiss-Prot
Match: Q5XF11 (F-box protein At4g35930 OS=Arabidopsis thaliana OX=3702 GN=At4g35930 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.9e-09
Identity = 43/145 (29.66%), Postives = 70/145 (48.28%), Query Frame = 0


Query: 53  TPKAPSKRRCSAINTTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLI 112
           TPK P    C           S LE+LP ++L++I+C + HD LK +  VS+ I  AT++
Sbjct: 147 TPKTPQADPC--------VSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATIL 206

Query: 113 AKELHFAYSTPSKVR----AFRTAIEFD---------NSSDLDEIEAPNAPPTRRFRSPL 172
           A++ HF Y+TP + R       T +  +         N + +     P AP  +    P 
Sbjct: 207 ARQYHFNYTTPDRSRQEMLRVMTPVPINRWPFRRGDGNPTMVSSPHTPKAP--KHAPRPP 266

Query: 173 NRKKLAD---ISVALFAEEDQWPKK 182
           +R KLA+   I+  LF ++  +P +
Sbjct: 267 SRTKLAEMKQITAVLFQDQTPFPSR 281

[Close]

BLAST of Tan0003815 vs. NCBI nr
Match: XP_008439907.1 (PREDICTED: F-box protein At4g05010-like [Cucumis melo] >KAA0052721.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 166/190 (87.37%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPKAPSKR 60
           MALGKK+GCLKSKSVVSAADKGLDFGVVRYTRGLGRKR+VISCNEEDSS DLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  RCSAINTTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLIAKELHFAY 120
           RC+ ++T V+AD SLLEALPQEILIR+LCGVEHDDLKQLIRVSKTI+EATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRTAIEFDNSSDLDEIEAPNAPPTRRFRSPLNRKKLADISVALFA-EEDQWP 180
           STPSKVRAFRTAIE ++SSD DEIEAPNA PTRRFRSPLNRKKLA+ISVALFA EED+WP
Sbjct: 121 STPSKVRAFRTAIELNDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

Query: 181 KKKLPIETEI 190
           KKKLPI TE+
Sbjct: 181 KKKLPIWTEM 190

[Close]

BLAST of Tan0003815 vs. NCBI nr
Match: TYK13104.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 166/190 (87.37%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPKAPSKR 60
           MALGKK+GCLKSKSVVSAADKGLDFGVVRYTRGLGRKR+VISCNEEDSS DLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  RCSAINTTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLIAKELHFAY 120
            C+ ++T V+AD SLLEALPQEILIR+LCGVEHDDLKQLIRVSKTI+EATLIAK+ HFAY
Sbjct: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRTAIEFDNSSDLDEIEAPNAPPTRRFRSPLNRKKLADISVALFA-EEDQWP 180
           STPSKVRAFRTAIE D+SSD DEIEAPNA PTRRFRSPLNRKKLA+ISVALFA EED+WP
Sbjct: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

Query: 181 KKKLPIETEI 190
           KKKLPI TE+
Sbjct: 181 KKKLPIWTEM 190

[Close]

BLAST of Tan0003815 vs. NCBI nr
Match: XP_004134730.1 (F-box protein At4g05010 [Cucumis sativus] >XP_031744056.1 F-box protein At4g05010 [Cucumis sativus] >KGN49188.1 hypothetical protein Csa_003153 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 9.0e-85
Identity = 164/190 (86.32%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPKAPSKR 60
           MALGKK+GCLKSKSVVSAADKGLDFGVVRYTRGLGRKR+VISC+EEDS TDLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCHEEDSPTDLTPKAPSKR 60

Query: 61  RCSAINTTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLIAKELHFAY 120
           RC+ ++T V+ D SLLEALPQEILIR+LCGVEHDDLKQLIRVSKTINEATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEDDRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTINEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRTAIEFDNSSDLDEIEAPNAPPTRRFRSPLNRKKLADISVALFA-EEDQWP 180
           STPSKVR FRTAIE D+SSD DEIEAPNA PTRRFR+PLNRKKLA+IS+ALFA EEDQWP
Sbjct: 121 STPSKVRRFRTAIELDDSSDFDEIEAPNACPTRRFRTPLNRKKLAEISIALFAEEEDQWP 180

Query: 181 KKKLPIETEI 190
           KKKLPI TE+
Sbjct: 181 KKKLPIWTEM 190

[Close]

BLAST of Tan0003815 vs. NCBI nr
Match: XP_022950447.1 (F-box protein SKIP27-like [Cucurbita moschata] >KAG6603722.1 F-box protein SKIP27, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033902.1 F-box protein SKIP27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.8 bits (795), Expect = 7.9e-81
Identity = 160/191 (83.77%), Postives = 175/191 (91.62%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVS-AADKGLDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPKAPSK 60
           MALGKKSGCLKSKSVVS AADK LDFGVVRY RGLGRKR+VISCN+EDSS DLTPKAPSK
Sbjct: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60

Query: 61  RRCSAINTTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLIAKELHFA 120
           RRCS ++TTVDAD SLLE LPQEIL+RILCGV+HDDLKQL+RVSKTI+EATLIAKE HFA
Sbjct: 61  RRCSVVSTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120

Query: 121 YSTPSKVRAFRTAIEF-DNSSDLDEIEAPNAPPTRRFRSPLNRKKLADISVALFAEEDQW 180
           Y TPSK+RAFRT+IE  DN  DLDEIEAP+AP TRRFRSPL+RKKLADISVALFAEE+QW
Sbjct: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPVTRRFRSPLSRKKLADISVALFAEEEQW 180

Query: 181 PKKKLPIETEI 190
           P+KK  IETE+
Sbjct: 181 PRKKYAIETEM 191

[Close]

BLAST of Tan0003815 vs. NCBI nr
Match: XP_022977983.1 (F-box protein SKIP27-like [Cucurbita maxima])

HSP 1 Score: 310.5 bits (794), Expect = 1.0e-80
Identity = 158/190 (83.16%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPKAPSKR 60
           MALGKKSGCLKSKSVVSAADK LDFGVVRY RGLGRKR+VISCN+EDSS DLTPK PSKR
Sbjct: 1   MALGKKSGCLKSKSVVSAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKTPSKR 60

Query: 61  RCSAINTTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLIAKELHFAY 120
           RCS ++TTVDA  SLLE LPQEILIRILCG++HDDLKQL+RVSKTI+EATLIAKE HFAY
Sbjct: 61  RCSVVSTTVDAGWSLLEVLPQEILIRILCGLDHDDLKQLVRVSKTISEATLIAKEWHFAY 120

Query: 121 STPSKVRAFRTAIEF-DNSSDLDEIEAPNAPPTRRFRSPLNRKKLADISVALFAEEDQWP 180
            TPSK+RAFRT+IE  DN  DLDEIEAP+AP TRRFRSPL+RKKLADISVALFAEE+QWP
Sbjct: 121 RTPSKIRAFRTSIELDDNFIDLDEIEAPDAPLTRRFRSPLSRKKLADISVALFAEEEQWP 180

Query: 181 KKKLPIETEI 190
           +KK  IETE+
Sbjct: 181 RKKYAIETEM 190

[Close]

BLAST of Tan0003815 vs. ExPASy TrEMBL
Match: A0A5A7UGT0 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003340 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.7e-86
Identity = 166/190 (87.37%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPKAPSKR 60
           MALGKK+GCLKSKSVVSAADKGLDFGVVRYTRGLGRKR+VISCNEEDSS DLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  RCSAINTTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLIAKELHFAY 120
           RC+ ++T V+AD SLLEALPQEILIR+LCGVEHDDLKQLIRVSKTI+EATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRTAIEFDNSSDLDEIEAPNAPPTRRFRSPLNRKKLADISVALFA-EEDQWP 180
           STPSKVRAFRTAIE ++SSD DEIEAPNA PTRRFRSPLNRKKLA+ISVALFA EED+WP
Sbjct: 121 STPSKVRAFRTAIELNDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

Query: 181 KKKLPIETEI 190
           KKKLPI TE+
Sbjct: 181 KKKLPIWTEM 190

[Close]

BLAST of Tan0003815 vs. ExPASy TrEMBL
Match: A0A5D3CPZ7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007130 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.7e-86
Identity = 166/190 (87.37%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPKAPSKR 60
           MALGKK+GCLKSKSVVSAADKGLDFGVVRYTRGLGRKR+VISCNEEDSS DLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  RCSAINTTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLIAKELHFAY 120
            C+ ++T V+AD SLLEALPQEILIR+LCGVEHDDLKQLIRVSKTI+EATLIAK+ HFAY
Sbjct: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRTAIEFDNSSDLDEIEAPNAPPTRRFRSPLNRKKLADISVALFA-EEDQWP 180
           STPSKVRAFRTAIE D+SSD DEIEAPNA PTRRFRSPLNRKKLA+ISVALFA EED+WP
Sbjct: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

Query: 181 KKKLPIETEI 190
           KKKLPI TE+
Sbjct: 181 KKKLPIWTEM 190

[Close]

BLAST of Tan0003815 vs. ExPASy TrEMBL
Match: A0A1S3B0I0 (F-box protein At4g05010-like OS=Cucumis melo OX=3656 GN=LOC103484553 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.7e-86
Identity = 166/190 (87.37%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPKAPSKR 60
           MALGKK+GCLKSKSVVSAADKGLDFGVVRYTRGLGRKR+VISCNEEDSS DLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  RCSAINTTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLIAKELHFAY 120
           RC+ ++T V+AD SLLEALPQEILIR+LCGVEHDDLKQLIRVSKTI+EATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRTAIEFDNSSDLDEIEAPNAPPTRRFRSPLNRKKLADISVALFA-EEDQWP 180
           STPSKVRAFRTAIE ++SSD DEIEAPNA PTRRFRSPLNRKKLA+ISVALFA EED+WP
Sbjct: 121 STPSKVRAFRTAIELNDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

Query: 181 KKKLPIETEI 190
           KKKLPI TE+
Sbjct: 181 KKKLPIWTEM 190

[Close]

BLAST of Tan0003815 vs. ExPASy TrEMBL
Match: A0A0A0KI01 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516960 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.3e-85
Identity = 164/190 (86.32%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPKAPSKR 60
           MALGKK+GCLKSKSVVSAADKGLDFGVVRYTRGLGRKR+VISC+EEDS TDLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCHEEDSPTDLTPKAPSKR 60

Query: 61  RCSAINTTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLIAKELHFAY 120
           RC+ ++T V+ D SLLEALPQEILIR+LCGVEHDDLKQLIRVSKTINEATLIAK+ HFAY
Sbjct: 61  RCNVVSTAVEDDRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTINEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRTAIEFDNSSDLDEIEAPNAPPTRRFRSPLNRKKLADISVALFA-EEDQWP 180
           STPSKVR FRTAIE D+SSD DEIEAPNA PTRRFR+PLNRKKLA+IS+ALFA EEDQWP
Sbjct: 121 STPSKVRRFRTAIELDDSSDFDEIEAPNACPTRRFRTPLNRKKLAEISIALFAEEEDQWP 180

Query: 181 KKKLPIETEI 190
           KKKLPI TE+
Sbjct: 181 KKKLPIWTEM 190

[Close]

BLAST of Tan0003815 vs. ExPASy TrEMBL
Match: A0A6J1GEU1 (F-box protein SKIP27-like OS=Cucurbita moschata OX=3662 GN=LOC111453544 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.8e-81
Identity = 160/191 (83.77%), Postives = 175/191 (91.62%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVS-AADKGLDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPKAPSK 60
           MALGKKSGCLKSKSVVS AADK LDFGVVRY RGLGRKR+VISCN+EDSS DLTPKAPSK
Sbjct: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60

Query: 61  RRCSAINTTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLIAKELHFA 120
           RRCS ++TTVDAD SLLE LPQEIL+RILCGV+HDDLKQL+RVSKTI+EATLIAKE HFA
Sbjct: 61  RRCSVVSTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120

Query: 121 YSTPSKVRAFRTAIEF-DNSSDLDEIEAPNAPPTRRFRSPLNRKKLADISVALFAEEDQW 180
           Y TPSK+RAFRT+IE  DN  DLDEIEAP+AP TRRFRSPL+RKKLADISVALFAEE+QW
Sbjct: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPVTRRFRSPLSRKKLADISVALFAEEEQW 180

Query: 181 PKKKLPIETEI 190
           P+KK  IETE+
Sbjct: 181 PRKKYAIETEM 191

[Close]

BLAST of Tan0003815 vs. TAIR 10
Match: AT4G21510.1 (F-box family protein )

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-31
Identity = 82/191 (42.93%), Postives = 117/191 (61.26%), Query Frame = 0


Query: 1   MALGKKSGCLKSKSVVSAADKGLDFGV--VRYTRGLGRKRIVI-SCNEEDSSTDLTP--- 60
           MAL K+   + S +     ++ L+ G+  VR+TRGLGRKRI+I SC  E  S        
Sbjct: 34  MALSKRGFVMTSNARFHGEEEELELGLGSVRFTRGLGRKRILISSCVRESLSRSAVEIPV 93

Query: 61  -------KAPSKRRCSAIN--TTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKT 120
                  K+  KR+ S I   ++  ++ S LE LPQ++LIR++CGV+H+DLK L  VSK+
Sbjct: 94  VSESPPVKSSLKRQRSRITIVSSSSSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSKS 153

Query: 121 INEATLIAKELHFAYSTPSKVRAFRTAIEFDNSSDL----DEIEAPNAPPTRRFRSPLNR 173
           I EA+L+AK LHFAY+TP K RAFR +I+ +  SD     D+IE PNAP   R+     +
Sbjct: 154 IREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKRK 213

[Close]

BLAST of Tan0003815 vs. TAIR 10
Match: AT1G61340.1 (F-box family protein )

HSP 1 Score: 128.3 bits (321), Expect = 6.7e-30
Identity = 87/185 (47.03%), Postives = 107/185 (57.84%), Query Frame = 0


Query: 1   MALGKK-----SGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPK 60
           MALGKK        L+ +  V     GL    V+Y RG GRKRI+IS  +E   +  T  
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60

Query: 61  APSKRRCSAINTTVDADMSL-LEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLIAK 120
              K+ C    T+V    S  LE LP +IL+RI+CGVEH+DLKQL  VSKTI EAT+IAK
Sbjct: 61  V-GKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMIAK 120

Query: 121 ELHFAYSTPSKVRAFRTA-----IEFDNSSDLDEIEAPNAPPTRRFR-SPLNRKK-LADI 173
           + HFAYSTP K   F          FD   D +EIEAP AP  +R+R S +NR K  + +
Sbjct: 121 QSHFAYSTPRKTSVFHHGRFGWDKPFDVEDDDEEIEAPGAPLQKRYRLSRINRNKDDSGV 180

[Close]

BLAST of Tan0003815 vs. TAIR 10
Match: AT4G05010.1 (F-box family protein )

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-25
Identity = 75/156 (48.08%), Postives = 98/156 (62.82%), Query Frame = 0


Query: 23  LDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPKAPSKRRCSAINTTVDADMSLLEALPQE 82
           L  G VR+TRGLGRKRI+IS    ++       +P  +R S  + T ++  SLLE L Q+
Sbjct: 19  LGLGFVRFTRGLGRKRILISKRAPEND------SPPVKRPS--HETTESCRSLLETLHQD 78

Query: 83  ILIRILCGVEHDDLKQLIRVSKTINEATLIAKELHFAYSTPSKVRAFRTAI-----EFDN 142
           ILIR+LC V+H+DL  L RVSKTI +A + AK+ HF YSTP K   FR AI       ++
Sbjct: 79  ILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNSNS 138

Query: 143 SSDLDEIEAPNAPPTRRFRSPLNRKK-LADISVALF 173
           SS  DE+E PNAP  RRF   +NR+  L+ IS+ LF
Sbjct: 139 SSQDDEMEPPNAPIRRRF---INRESDLSKISMVLF 163

[Close]

BLAST of Tan0003815 vs. TAIR 10
Match: AT1G61340.2 (F-box family protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.7e-23
Identity = 87/231 (37.66%), Postives = 107/231 (46.32%), Query Frame = 0


Query: 1   MALGKK-----SGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRIVISCNEEDSSTDLTPK 60
           MALGKK        L+ +  V     GL    V+Y RG GRKRI+IS  +E   +  T  
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60

Query: 61  APSKRRCSAINTTVDADMSL-LEALPQEIL------------------------------ 120
              K+ C    T+V    S  LE LP +IL                              
Sbjct: 61  V-GKKLCDDKTTSVAEGQSRELEDLPLDILLRVFVNSASVNQIELKVESFLFSEIQNRNG 120

Query: 121 ----------------IRILCGVEHDDLKQLIRVSKTINEATLIAKELHFAYSTPSKVRA 173
                           +RI+CGVEH+DLKQL  VSKTI EAT+IAK+ HFAYSTP K   
Sbjct: 121 NEKMFNFFHIWKTFVIVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKTSV 180

[Close]

BLAST of Tan0003815 vs. TAIR 10
Match: AT4G35930.1 (F-box family protein )

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-10
Identity = 43/145 (29.66%), Postives = 70/145 (48.28%), Query Frame = 0


Query: 53  TPKAPSKRRCSAINTTVDADMSLLEALPQEILIRILCGVEHDDLKQLIRVSKTINEATLI 112
           TPK P    C           S LE+LP ++L++I+C + HD LK +  VS+ I  AT++
Sbjct: 147 TPKTPQADPC--------VSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATIL 206

Query: 113 AKELHFAYSTPSKVR----AFRTAIEFD---------NSSDLDEIEAPNAPPTRRFRSPL 172
           A++ HF Y+TP + R       T +  +         N + +     P AP  +    P 
Sbjct: 207 ARQYHFNYTTPDRSRQEMLRVMTPVPINRWPFRRGDGNPTMVSSPHTPKAP--KHAPRPP 266

Query: 173 NRKKLAD---ISVALFAEEDQWPKK 182
           +R KLA+   I+  LF ++  +P +
Sbjct: 267 SRTKLAEMKQITAVLFQDQTPFPSR 281

The following BLAST results are available for this feature:

BLAST of Tan0003815 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65416	2.9e-30	42.93	F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2	[more]
Q8GX77	9.5e-29	47.03	F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1	[more]
Q9S9T6	2.4e-24	48.08	F-box protein At4g05010 OS=Arabidopsis thaliana OX=3702 GN=At4g05010 PE=2 SV=1	[more]
Q5XF11	4.9e-09	29.66	F-box protein At4g35930 OS=Arabidopsis thaliana OX=3702 GN=At4g35930 PE=2 SV=1	[more]

BLAST of Tan0003815 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439907.1	1.4e-85	87.37	PREDICTED: F-box protein At4g05010-like [Cucumis melo] >KAA0052721.1 F-box prote...	[more]
TYK13104.1	1.4e-85	87.37	F-box protein [Cucumis melo var. makuwa]	[more]
XP_004134730.1	9.0e-85	86.32	F-box protein At4g05010 [Cucumis sativus] >XP_031744056.1 F-box protein At4g0501...	[more]
XP_022950447.1	7.9e-81	83.77	F-box protein SKIP27-like [Cucurbita moschata] >KAG6603722.1 F-box protein SKIP2...	[more]
XP_022977983.1	1.0e-80	83.16	F-box protein SKIP27-like [Cucurbita maxima]	[more]

BLAST of Tan0003815 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGT0	6.7e-86	87.37	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003340...	[more]
A0A5D3CPZ7	6.7e-86	87.37	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007130...	[more]
A0A1S3B0I0	6.7e-86	87.37	F-box protein At4g05010-like OS=Cucumis melo OX=3656 GN=LOC103484553 PE=4 SV=1	[more]
A0A0A0KI01	4.3e-85	86.32	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516960 PE=4 ...	[more]
A0A6J1GEU1	3.8e-81	83.77	F-box protein SKIP27-like OS=Cucurbita moschata OX=3662 GN=LOC111453544 PE=4 SV=...	[more]

BLAST of Tan0003815 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21510.1	2.1e-31	42.93	F-box family protein	[more]
AT1G61340.1	6.7e-30	47.03	F-box family protein	[more]
AT4G05010.1	1.7e-25	48.08	F-box family protein	[more]
AT1G61340.2	2.7e-23	37.66	F-box family protein	[more]
AT4G35930.1	3.5e-10	29.66	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34049	F-BOX PROTEIN SKIP27	coord: 4..176
None	No IPR available	PANTHER	PTHR34049:SF1	F-BOX PROTEIN SKIP27	coord: 4..176
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 73..121 score: 9.338503
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 72..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003815.1	Tan0003815.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding