Tan0003378 (gene) Snake gourd v1

Overview
NameTan0003378
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG10: 16549558 .. 16549839 (+)
RNA-Seq ExpressionTan0003378
SyntenyTan0003378
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCAACAACCGCCACAAAAAAACTCACTCTTCCTTCTCAATCTTTAGTTTTTTCAAATCCAAAAGGGCTCGGAAAGGAGATCACTGCGACGACGAGATAGCTAGATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAAGCTCATCGTTGGGTTGGCGAACCTGGTATTGACAGAAAAGCCAAAGATTATATTGACAGGATCTATCGAAATCGTGTTTTAGAATCCGAGCGCCAAACTGTCACTATTCATCCCAATTCAACGACACCCAATATGTGA

mRNA sequence

ATGGGAGGCAACAACCGCCACAAAAAAACTCACTCTTCCTTCTCAATCTTTAGTTTTTTCAAATCCAAAAGGGCTCGGAAAGGAGATCACTGCGACGACGAGATAGCTAGATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAAGCTCATCGTTGGGTTGGCGAACCTGGTATTGACAGAAAAGCCAAAGATTATATTGACAGGATCTATCGAAATCGTGTTTTAGAATCCGAGCGCCAAACTGTCACTATTCATCCCAATTCAACGACACCCAATATGTGA

Coding sequence (CDS)

ATGGGAGGCAACAACCGCCACAAAAAAACTCACTCTTCCTTCTCAATCTTTAGTTTTTTCAAATCCAAAAGGGCTCGGAAAGGAGATCACTGCGACGACGAGATAGCTAGATCGAGCAAGGTGTGGCCGAGCGATGAGGACAAAGCTCATCGTTGGGTTGGCGAACCTGGTATTGACAGAAAAGCCAAAGATTATATTGACAGGATCTATCGAAATCGTGTTTTAGAATCCGAGCGCCAAACTGTCACTATTCATCCCAATTCAACGACACCCAATATGTGA

Protein sequence

MGGNNRHKKTHSSFSIFSFFKSKRARKGDHCDDEIARSSKVWPSDEDKAHRWVGEPGIDRKAKDYIDRIYRNRVLESERQTVTIHPNSTTPNM
Homology
BLAST of Tan0003378 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 7.9e-34
Identity = 75/99 (75.76%), Postives = 82/99 (82.83%), Query Frame = 0

Query: 1  MGGNNRHKKTHSSFSIFSFFKSKRARKGDHCD------DEIARSSKVWPSDEDKAHRWVG 60
          MGGNNR KK+HSSFSIFSFFKS+R RKGD+C+      DE+ RS KVWPSDEDKAH WV 
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVLESERQTVTIHPNSTTPNM 94
          EPGIDRKAKDYIDRIYRNRV ESERQT+TI PN T  N+
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

BLAST of Tan0003378 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 1.3e-33
Identity = 75/99 (75.76%), Postives = 80/99 (80.81%), Query Frame = 0

Query: 1  MGGNNRHKKTHSSFSIFSFFKSKRARKGDHCD------DEIARSSKVWPSDEDKAHRWVG 60
          MGGNNR KK H+SFSIFSFFKS+R RKGDHC+      DE+ RS KVWPSDEDKAH WV 
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVLESERQTVTIHPNSTTPNM 94
          EPGIDRKAKDYIDRIYRNRV ESERQTVTI PN    N+
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

BLAST of Tan0003378 vs. NCBI nr
Match: KAG6592308.1 (hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.1 bits (375), Expect = 1.9e-32
Identity = 73/94 (77.66%), Postives = 79/94 (84.04%), Query Frame = 0

Query: 1  MGGNNRHKKTHSSFSIFSFFKSKRARKGDHCD-----DEIARSSKVWPSDEDKAHRWVGE 60
          MGGNNR KK HSSFSIF+FFKS+R+RK DHCD     DEI RSSK+WPSDEDK HRWV E
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKSRRSRKEDHCDHSGGWDEIPRSSKIWPSDEDKIHRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTIHPNST 90
          PGIDRKAKDYIDRIYRNRV ESERQTVT+  + T
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTLPASGT 94

BLAST of Tan0003378 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-32
Identity = 74/97 (76.29%), Postives = 79/97 (81.44%), Query Frame = 0

Query: 3  GNNRHKKTHSSFSIFSFFKSKRARKGDHCD------DEIARSSKVWPSDEDKAHRWVGEP 62
          G NR KK+HSSFSIFSFFKSKR RKGDH D      DE+ RS+KVWPSDEDKAH W+ EP
Sbjct: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVLESERQTVTIHPNSTTPNM 94
          GIDRKAKDYIDRIYRNRV ESERQTVTI PN T  N+
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

BLAST of Tan0003378 vs. NCBI nr
Match: KAG6592306.1 (hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.7 bits (369), Expect = 9.7e-32
Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 0

Query: 1  MGGNNRHKKTHSSFSIFSFFKSKRARKGDHCD-----DEIARSSKVWPSDEDKAHRWVGE 60
          MGGNNR KK HSSFSIF+FFKSK++RK DHCD     DE+ RS KVWPSDEDK HRWV E
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKSKKSRKEDHCDHSSCWDEMPRSGKVWPSDEDKTHRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTIHPNSTTPN 93
          PGIDRKAKDYIDRIYRNRV ESERQTVT+  N    N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTLPANGIKLN 97

BLAST of Tan0003378 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.8e-34
Identity = 75/99 (75.76%), Postives = 82/99 (82.83%), Query Frame = 0

Query: 1  MGGNNRHKKTHSSFSIFSFFKSKRARKGDHCD------DEIARSSKVWPSDEDKAHRWVG 60
          MGGNNR KK+HSSFSIFSFFKS+R RKGD+C+      DE+ RS KVWPSDEDKAH WV 
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVLESERQTVTIHPNSTTPNM 94
          EPGIDRKAKDYIDRIYRNRV ESERQT+TI PN T  N+
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

BLAST of Tan0003378 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.5e-34
Identity = 75/99 (75.76%), Postives = 80/99 (80.81%), Query Frame = 0

Query: 1  MGGNNRHKKTHSSFSIFSFFKSKRARKGDHCD------DEIARSSKVWPSDEDKAHRWVG 60
          MGGNNR KK H+SFSIFSFFKS+R RKGDHC+      DE+ RS KVWPSDEDKAH WV 
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVLESERQTVTIHPNSTTPNM 94
          EPGIDRKAKDYIDRIYRNRV ESERQTVTI PN    N+
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

BLAST of Tan0003378 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 74/97 (76.29%), Postives = 79/97 (81.44%), Query Frame = 0

Query: 3  GNNRHKKTHSSFSIFSFFKSKRARKGDHCD------DEIARSSKVWPSDEDKAHRWVGEP 62
          G NR KK+HSSFSIFSFFKSKR RKGDH D      DE+ RS+KVWPSDEDKAH W+ EP
Sbjct: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVLESERQTVTIHPNSTTPNM 94
          GIDRKAKDYIDRIYRNRV ESERQTVTI PN T  N+
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

BLAST of Tan0003378 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.1e-32
Identity = 74/97 (76.29%), Postives = 79/97 (81.44%), Query Frame = 0

Query: 3  GNNRHKKTHSSFSIFSFFKSKRARKGDHCD------DEIARSSKVWPSDEDKAHRWVGEP 62
          G NR KK+HSSFSIFSFFKS+R RKGDH D      DE+ RS+KVWPSDEDKAH WV EP
Sbjct: 2  GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVLESERQTVTIHPNSTTPNM 94
          GIDRKAKDYIDRIYRNRV ESERQTVTI PN T  N+
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

BLAST of Tan0003378 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.8e-31
Identity = 70/98 (71.43%), Postives = 80/98 (81.63%), Query Frame = 0

Query: 1  MGGNNRHKKTHSSFSIFSFFKSKRARKGDHCD-----DEIARSSKVWPSDEDKAHRWVGE 60
          MGG++R KKTHSSFSIFSFFKSKR RKGD  +     +++  SSKVWPSDEDK +RWV E
Sbjct: 1  MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVLESERQTVTIHPNSTTPNM 94
          PGIDRKAKDYIDRIY+NRV E+ERQTVTIHPN    N+
Sbjct: 61 PGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

BLAST of Tan0003378 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 6.3e-13
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 0

Query: 1  MGGNNRHKKTHSS--FSIFSFFKSKRARK--GDHCDDEIARSSKVWPSDEDKAHRWVGEP 60
          MGG NR   +HSS  FS+FSFFK++R+ +   D   D+   + K   SDEDK + WV EP
Sbjct: 1  MGGKNR---SHSSKRFSLFSFFKTRRSHRVEADGSWDDFGYTRKAMASDEDKRY-WVAEP 60

Query: 61 GIDRKAKDYIDRIYRNRVLESERQTVT 84
          GIDRKA  +I + +  RV ESERQT++
Sbjct: 61 GIDRKASAFIAKFHATRVSESERQTLS 83

BLAST of Tan0003378 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 5.5e-09
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0

Query: 33 DEIARSSKVWPSDEDKAHRWVGEPGIDRKAKDYIDRIYRNRVLESERQTV 83
          D++  + K W SDEDK + WV EPGIDRKA  +I + + +RV ESERQT+
Sbjct: 18 DDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESERQTL 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0035003.17.9e-3475.76hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343... [more]
KGN45869.11.3e-3375.76hypothetical protein Csa_005516 [Cucumis sativus][more]
KAG6592308.11.9e-3277.66hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN45870.12.5e-3276.29hypothetical protein Csa_004960 [Cucumis sativus][more]
KAG6592306.19.7e-3275.26hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A5A7SWT93.8e-3475.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KAK66.5e-3475.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1[more]
A0A0A0K7Y21.2e-3276.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1[more]
A0A0A0KBW12.1e-3276.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1[more]
A0A0A0K8W08.8e-3171.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G05858.16.3e-1349.43unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G26620.15.5e-0954.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511OS06G0632400 PROTEINcoord: 1..83
NoneNo IPR availablePANTHERPTHR33511:SF17RIBOSOMAL PROTEIN S12coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0003378.1Tan0003378.1mRNA