Tan0003164 (gene) Snake gourd v1

Overview
NameTan0003164
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionglycine-rich protein 5-like
LocationLG01: 8876632 .. 8877076 (-)
RNA-Seq ExpressionTan0003164
SyntenyTan0003164
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTAGTGAAGTGATCCCAAAATTAGAAATGAAAACTTATGCCATTGTTCTCATAACTATCGGATCAGTGATAGCCGCTGCAATGGTTTTGTGTTGTCTTTGTAAATATGGGGGTCGTAAAAAGAAGAAAACAAGAACACAAACATATATAGCTAATGCTCCAAGGCCAACGCCGCCGCCTCAACGGATGAACCATGATCTTGAACGCGGCCATGACACTCAAAGAAGTGAAATTAAGAACGGTGGGATGACGATTCTGGCCGGAGCCGGTGCTGGTTTAGCTACTGCAGCTGTGGTTACTACTTTTAGCAATGAAGGAGGAGGGGACGATGGAGGAGATGGTGGCGGAGGTGATGGTGATGGCGGTGGTGGCGGCTGCGGTGGCGGTGGCTGCGGTGGTGGCGGGTGTGGTGGCGGCGGTTGTGGTGGCGGGTGTGGAGGTTGA

mRNA sequence

TATTAGTGAAGTGATCCCAAAATTAGAAATGAAAACTTATGCCATTGTTCTCATAACTATCGGATCAGTGATAGCCGCTGCAATGGTTTTGTGTTGTCTTTGTAAATATGGGGGTCGTAAAAAGAAGAAAACAAGAACACAAACATATATAGCTAATGCTCCAAGGCCAACGCCGCCGCCTCAACGGATGAACCATGATCTTGAACGCGGCCATGACACTCAAAGAAGTGAAATTAAGAACGGTGGGATGACGATTCTGGCCGGAGCCGGTGCTGGTTTAGCTACTGCAGCTGTGGTTACTACTTTTAGCAATGAAGGAGGAGGGGACGATGGAGGAGATGGTGGCGGAGGTGATGGTGATGGCGGTGGTGGCGGCTGCGGTGGCGGTGGCTGCGGTGGTGGCGGGTGTGGTGGCGGCGGTTGTGGTGGCGGGTGTGGAGGTTGA

Coding sequence (CDS)

ATGAAAACTTATGCCATTGTTCTCATAACTATCGGATCAGTGATAGCCGCTGCAATGGTTTTGTGTTGTCTTTGTAAATATGGGGGTCGTAAAAAGAAGAAAACAAGAACACAAACATATATAGCTAATGCTCCAAGGCCAACGCCGCCGCCTCAACGGATGAACCATGATCTTGAACGCGGCCATGACACTCAAAGAAGTGAAATTAAGAACGGTGGGATGACGATTCTGGCCGGAGCCGGTGCTGGTTTAGCTACTGCAGCTGTGGTTACTACTTTTAGCAATGAAGGAGGAGGGGACGATGGAGGAGATGGTGGCGGAGGTGATGGTGATGGCGGTGGTGGCGGCTGCGGTGGCGGTGGCTGCGGTGGTGGCGGGTGTGGTGGCGGCGGTTGTGGTGGCGGGTGTGGAGGTTGA

Protein sequence

MKTYAIVLITIGSVIAAAMVLCCLCKYGGRKKKKTRTQTYIANAPRPTPPPQRMNHDLERGHDTQRSEIKNGGMTILAGAGAGLATAAVVTTFSNEGGGDDGGDGGGGDGDGGGGGCGGGGCGGGGCGGGGCGGGCGG
Homology
BLAST of Tan0003164 vs. NCBI nr
Match: KAG6577050.1 (hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-21
Identity = 95/139 (68.35%), Postives = 105/139 (75.54%), Query Frame = 0

Query: 1   MKTYAIVLITIGSVIAAAMVLCCLCKYGGRKKKKTRTQTYIANAPRPTPPPQRMNHDLER 60
           M+TYAIVLIT G VIA+A++L C+C YGGRKKKK    TY ++A RPTP P R   DLE 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSR---DLEL 60

Query: 61  GHDTQRSEIKNGGMTILAGAGAGLATAAVVTTFSNEGGGDDGGDGG-GGDGDGGGGGCGG 120
           G      E KNGGMTILAGA AGLATAAVVT+ +N+GGG  GG GG  G GDGGGGGC G
Sbjct: 61  G------EAKNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDGGGGGC-G 120

Query: 121 GGCGGGGCGGGGCGGGCGG 139
           GGC GGGC GGGCGGGCGG
Sbjct: 121 GGC-GGGC-GGGCGGGCGG 127

BLAST of Tan0003164 vs. NCBI nr
Match: XP_022985127.1 (glycine-rich protein 5-like [Cucurbita maxima])

HSP 1 Score: 111.7 bits (278), Expect = 5.1e-21
Identity = 96/141 (68.09%), Postives = 105/141 (74.47%), Query Frame = 0

Query: 1   MKTYAIVLITIGSVIAAAMVLCCLCKYGGRKKKKTRTQTYIANAPRPTPPPQRMNHDLER 60
           M+TYAIVLIT G VIA+A++L C+C YGGRKKKKT   TY ++A RPTP P R   DLE 
Sbjct: 1   MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSR---DLEL 60

Query: 61  GHDTQRSEIKNGGMTILAGAGAGLATAAVVTTFSNEGGGDDGGDGGGGDGDGGGGGCGGG 120
           G      E KNGGMTILAGA AGLATAAVVT+ SN+GG   GG GGG  GD GGGG GGG
Sbjct: 61  G------EAKNGGMTILAGAAAGLATAAVVTSLSNDGG---GGGGGGEGGDDGGGGDGGG 120

Query: 121 GCG---GGGCGGGGCGGGCGG 139
           GCG   GGGC GGGCGGGCGG
Sbjct: 121 GCGGGCGGGC-GGGCGGGCGG 128

BLAST of Tan0003164 vs. NCBI nr
Match: XP_023552868.1 (glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-20
Identity = 93/138 (67.39%), Postives = 103/138 (74.64%), Query Frame = 0

Query: 1   MKTYAIVLITIGSVIAAAMVLCCLCKYGGRKKKKTRTQTYIANAPRPTPPPQRMNHDLER 60
           M+TYAIVLIT G VIA+A++L C+C YGGRKKKK    TY ++A RPTP P R   DLE 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSR---DLEL 60

Query: 61  GHDTQRSEIKNGGMTILAGAGAGLATAAVVTTFSNEGGGDDGGDGGGGDGDGGGGGCGGG 120
           G      E KNGGMTILAGA AGLATAAVVT+ SN+GGG  GG+ GGGDG GG GG G G
Sbjct: 61  G------EAKNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGGCG 120

Query: 121 GCGGGGCGGGGCGGGCGG 139
           G  GGGC GGGCGGGCGG
Sbjct: 121 GGCGGGC-GGGCGGGCGG 128

BLAST of Tan0003164 vs. NCBI nr
Match: XP_022931328.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 104.8 bits (260), Expect = 6.2e-19
Identity = 92/139 (66.19%), Postives = 103/139 (74.10%), Query Frame = 0

Query: 1   MKTYAIVLITIGSVIAAAMVLCCLCKYGGRKKKKTRTQTYIANAPRPTPPPQRMNHDLER 60
           M+TYAIVLIT G VIA+A++L C+C YGGRKKKK    TY ++A RPTP P R   DLE 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSR---DLEL 60

Query: 61  GHDTQRSEIKNGGMTILAGAGAGLATAAVVTTFSNE-GGGDDGGDGGGGDGDGGGGGCGG 120
           G      E KNGGMTILAGA AGLATAAVVT+ +N+ GGG  GG+ GGGDG GG GG G 
Sbjct: 61  G------EAKNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGEEGGGDGSGGDGGGGC 120

Query: 121 GGCGGGGCGGGGCGGGCGG 139
           GG  GGGC GGGCGGGCGG
Sbjct: 121 GGGCGGGC-GGGCGGGCGG 129

BLAST of Tan0003164 vs. NCBI nr
Match: PIN16641.1 (hypothetical protein CDL12_10707 [Handroanthus impetiginosus])

HSP 1 Score: 98.2 bits (243), Expect = 5.8e-17
Identity = 80/140 (57.14%), Postives = 95/140 (67.86%), Query Frame = 0

Query: 1   MKTYAIVLITIGSVIAAAMVLCCLCKYGGRKKKKTRTQTYIANAPRPTPPPQRMNHDLER 60
           MK YA+VLI +GS+ A  ++LCCLC   GRKKK+       A APRP+ PPQ +  D+E+
Sbjct: 1   MKAYAVVLIVLGSIAAVILLLCCLCN-NGRKKKRPAAAPNSAAAPRPSLPPQPVYRDVEK 60

Query: 61  GHDTQRSEIKNGGMTILAGAGAGLATAAVVTTFSNEGGGDDGGDGGGGDGDGGGGGCGGG 120
           G +++ S +KNGGM +L    A  ATA      SN GGG  GG GGGGDG GGGGG GGG
Sbjct: 61  GENSKSSGVKNGGMVVLGAGAAIAATAVTAAVISNSGGGGCGGGGGGGDGGGGGGGDGGG 120

Query: 121 GCGGGGCGGGGCG--GGCGG 139
            CGGGGCGGGGCG  GGCGG
Sbjct: 121 CCGGGGCGGGGCGGCGGCGG 139

BLAST of Tan0003164 vs. ExPASy TrEMBL
Match: A0A6J1J409 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-21
Identity = 96/141 (68.09%), Postives = 105/141 (74.47%), Query Frame = 0

Query: 1   MKTYAIVLITIGSVIAAAMVLCCLCKYGGRKKKKTRTQTYIANAPRPTPPPQRMNHDLER 60
           M+TYAIVLIT G VIA+A++L C+C YGGRKKKKT   TY ++A RPTP P R   DLE 
Sbjct: 1   MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSR---DLEL 60

Query: 61  GHDTQRSEIKNGGMTILAGAGAGLATAAVVTTFSNEGGGDDGGDGGGGDGDGGGGGCGGG 120
           G      E KNGGMTILAGA AGLATAAVVT+ SN+GG   GG GGG  GD GGGG GGG
Sbjct: 61  G------EAKNGGMTILAGAAAGLATAAVVTSLSNDGG---GGGGGGEGGDDGGGGDGGG 120

Query: 121 GCG---GGGCGGGGCGGGCGG 139
           GCG   GGGC GGGCGGGCGG
Sbjct: 121 GCGGGCGGGC-GGGCGGGCGG 128

BLAST of Tan0003164 vs. ExPASy TrEMBL
Match: A0A6J1EY84 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.0e-19
Identity = 92/139 (66.19%), Postives = 103/139 (74.10%), Query Frame = 0

Query: 1   MKTYAIVLITIGSVIAAAMVLCCLCKYGGRKKKKTRTQTYIANAPRPTPPPQRMNHDLER 60
           M+TYAIVLIT G VIA+A++L C+C YGGRKKKK    TY ++A RPTP P R   DLE 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSR---DLEL 60

Query: 61  GHDTQRSEIKNGGMTILAGAGAGLATAAVVTTFSNE-GGGDDGGDGGGGDGDGGGGGCGG 120
           G      E KNGGMTILAGA AGLATAAVVT+ +N+ GGG  GG+ GGGDG GG GG G 
Sbjct: 61  G------EAKNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGEEGGGDGSGGDGGGGC 120

Query: 121 GGCGGGGCGGGGCGGGCGG 139
           GG  GGGC GGGCGGGCGG
Sbjct: 121 GGGCGGGC-GGGCGGGCGG 129

BLAST of Tan0003164 vs. ExPASy TrEMBL
Match: A0A2G9HGH5 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_10707 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.8e-17
Identity = 80/140 (57.14%), Postives = 95/140 (67.86%), Query Frame = 0

Query: 1   MKTYAIVLITIGSVIAAAMVLCCLCKYGGRKKKKTRTQTYIANAPRPTPPPQRMNHDLER 60
           MK YA+VLI +GS+ A  ++LCCLC   GRKKK+       A APRP+ PPQ +  D+E+
Sbjct: 1   MKAYAVVLIVLGSIAAVILLLCCLCN-NGRKKKRPAAAPNSAAAPRPSLPPQPVYRDVEK 60

Query: 61  GHDTQRSEIKNGGMTILAGAGAGLATAAVVTTFSNEGGGDDGGDGGGGDGDGGGGGCGGG 120
           G +++ S +KNGGM +L    A  ATA      SN GGG  GG GGGGDG GGGGG GGG
Sbjct: 61  GENSKSSGVKNGGMVVLGAGAAIAATAVTAAVISNSGGGGCGGGGGGGDGGGGGGGDGGG 120

Query: 121 GCGGGGCGGGGCG--GGCGG 139
            CGGGGCGGGGCG  GGCGG
Sbjct: 121 CCGGGGCGGGGCGGCGGCGG 139

BLAST of Tan0003164 vs. ExPASy TrEMBL
Match: A0A0A0KVE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.1e-16
Identity = 86/137 (62.77%), Postives = 96/137 (70.07%), Query Frame = 0

Query: 1   MKTYAIVLITIGSVIAAAMVLCCLCKYGGRKKKKTRTQTYIANAPRPTPPPQRMNHDLER 60
           MKTYAIVLI  GSVI A M+L C+CK+G  +KKKT T     N P+ TP   + N D+ER
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITY----NMPKRTP---QRNLDIER 60

Query: 61  GHDTQRSEIKNGGMTILAGAGAGLATAAVVTTFSNEGGGDDGGDGGGGDGDGGGGGCGGG 120
           G   + +   NGGMTIL GA AGLATAAVVTT S+ GGG  G  G GGDGDGGGGG  GG
Sbjct: 61  GQLPKNN--NNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGG 120

Query: 121 GCGGGGCGGGGCGGGCG 138
           GC  GGC GGGCGGGCG
Sbjct: 121 GC--GGC-GGGCGGGCG 125

BLAST of Tan0003164 vs. ExPASy TrEMBL
Match: A0A1U8HEI6 (loricrin-like OS=Capsicum annuum OX=4072 GN=LOC107879282 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 79/143 (55.24%), Postives = 94/143 (65.73%), Query Frame = 0

Query: 1   MKTYAIVLITIGSVIAA-AMVLCCLCKYGGRKKK-KTRTQTYIANAPRPTPP-PQRMNHD 60
           MK YAI LI  GSV AA  ++ CC CK G +KK     T+     +P P PP P ++N D
Sbjct: 1   MKAYAIALIVCGSVAAALVLIFCCFCKSGRKKKSYPVSTRNVTGGSPAPPPPQPLQVNRD 60

Query: 61  LERGHDTQRSE--IKNGGMTILAGAGAGLATAAVVTTFSNEGGGDDGGDGGGGDGDGGGG 120
           +E+G    +S   I++GGM +L  A A  ATAAVVT+ +  GGG  GG GGGGDG G  G
Sbjct: 61  VEKGEIKAKSNTAIRDGGMVVLGAAAATAATAAVVTS-AYSGGGGCGGGGGGGDGGGASG 120

Query: 121 GCGGGGCGGGGCGGGGCGGGCGG 139
           GCGGGGCGGGGCGGGGC GGCGG
Sbjct: 121 GCGGGGCGGGGCGGGGC-GGCGG 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6577050.13.0e-2168.35hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022985127.15.1e-2168.09glycine-rich protein 5-like [Cucurbita maxima][more]
XP_023552868.11.5e-2067.39glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo][more]
XP_022931328.16.2e-1966.19glycine-rich protein 5-like [Cucurbita moschata][more]
PIN16641.15.8e-1757.14hypothetical protein CDL12_10707 [Handroanthus impetiginosus][more]
Match NameE-valueIdentityDescription
A0A6J1J4092.5e-2168.09glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=... [more]
A0A6J1EY843.0e-1966.19glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 S... [more]
A0A2G9HGH52.8e-1757.14Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_10707 P... [more]
A0A0A0KVE14.1e-1662.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1[more]
A0A1U8HEI61.6e-1255.24loricrin-like OS=Capsicum annuum OX=4072 GN=LOC107879282 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0003164.1Tan0003164.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane