Tan0002362 (gene) Snake gourd v1

Overview


Name	Tan0002362
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	nuclear transcription factor Y subunit B-1
Location	LG06: 7081433 .. 7082169 (-)
RNA-Seq Expression	Tan0002362
Synteny	Tan0002362

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAGAGGATAGAAAAAAAAACCTCTTTCTTTTTCCATTTTTTTTCCTCCTTTCCCTTTCTCTTTTTTAGATGGATGATCACACAGGCAAGGCAGAGAGATTAGTAGAATTTAAGTATGATTTCTCCACCGGTGGCGGCGGAGGAGTCTGTGGCAGCACCGGTGGGTCGAGCGAGGAAGCTGGTAGCGGTGGCGTCGGGATCGTAAAAGAGCAAGATCGGTTGCTGCCAATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTGCCTCCAAACGCCAAAATCTCAAAGGAAGCCAAAGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGTTTCGTCACCGGGGAGGCGTCGGATAAGTGTCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGACATTTGCTGTGCCTTGGCCACTCTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATGGAAGGGGAGAGAGCTCAACAAAATAAGGGTTGTTGCCATAGTAATAGTAATAACCATGATGCAATATGAGAGACATAATTGAAGAAATTTGTCTCAAGGATTTGGTTTAAAAAAAATGGAACTTTCCTCTTTTTCTCCCTTTTGTCAATTGGGTTTTTTCTTAGATGGGGTTTTGAGAGTACAAACAAGATAAGCTCAAGAGGGGAAATGGGGTTGGAGAAGGTTTTTTTTTTTTTGGTTTAATTTGATTTCTGAC

mRNA sequence

TTTAGAGGATAGAAAAAAAAACCTCTTTCTTTTTCCATTTTTTTTCCTCCTTTCCCTTTCTCTTTTTTAGATGGATGATCACACAGGCAAGGCAGAGAGATTAGTAGAATTTAAGTATGATTTCTCCACCGGTGGCGGCGGAGGAGTCTGTGGCAGCACCGGTGGGTCGAGCGAGGAAGCTGGTAGCGGTGGCGTCGGGATCGTAAAAGAGCAAGATCGGTTGCTGCCAATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTGCCTCCAAACGCCAAAATCTCAAAGGAAGCCAAAGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGTTTCGTCACCGGGGAGGCGTCGGATAAGTGTCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGACATTTGCTGTGCCTTGGCCACTCTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATGGAAGGGGAGAGAGCTCAACAAAATAAGGGTTGTTGCCATAGTAATAGTAATAACCATGATGCAATATGAGAGACATAATTGAAGAAATTTGTCTCAAGGATTTGGTTTAAAAAAAATGGAACTTTCCTCTTTTTCTCCCTTTTGTCAATTGGGTTTTTTCTTAGATGGGGTTTTGAGAGTACAAACAAGATAAGCTCAAGAGGGGAAATGGGGTTGGAGAAGGTTTTTTTTTTTTTGGTTTAATTTGATTTCTGAC

Coding sequence (CDS)

ATGGATGATCACACAGGCAAGGCAGAGAGATTAGTAGAATTTAAGTATGATTTCTCCACCGGTGGCGGCGGAGGAGTCTGTGGCAGCACCGGTGGGTCGAGCGAGGAAGCTGGTAGCGGTGGCGTCGGGATCGTAAAAGAGCAAGATCGGTTGCTGCCAATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTGCCTCCAAACGCCAAAATCTCAAAGGAAGCCAAAGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGTTTCGTCACCGGGGAGGCGTCGGATAAGTGTCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGACATTTGCTGTGCCTTGGCCACTCTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATGGAAGGGGAGAGAGCTCAACAAAATAAGGGTTGTTGCCATAGTAATAGTAATAACCATGATGCAATATGA

Protein sequence

MDDHTGKAERLVEFKYDFSTGGGGGVCGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCHSNSNNHDAI

Homology

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BLAST of Tan0002362 vs. ExPASy Swiss-Prot
Match: O82248 (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.8e-42
Identity = 87/113 (76.99%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 44  IVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 103
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 104 KTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQN-KGCCHSNSNN 156
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+   + KG   S+ +N
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSSPDN 160

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BLAST of Tan0002362 vs. ExPASy Swiss-Prot
Match: Q9SLG0 (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 4.2e-38
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 34  SEEAGSGGV--GIVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG GG   G V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCHS 153
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+    NKG   S
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NKGSGKS 125

Query: 154 -NSNNHDA 159
            + +N DA
Sbjct: 126 GDGSNRDA 129

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BLAST of Tan0002362 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 5.5e-38
Identity = 81/125 (64.80%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 19  STGGGGGVCGS---TGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKQILPPNAKISKEA 78
           S GGGGG   S    GG     G GG G V+EQDR LPIAN+ RIMK+ +P N KI+K+A
Sbjct: 7   SPGGGGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDA 66

Query: 79  KETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYR 138
           KET+QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YR
Sbjct: 67  KETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYR 126

Query: 139 EMEGE 141
           EMEG+
Sbjct: 127 EMEGD 131

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BLAST of Tan0002362 vs. ExPASy Swiss-Prot
Match: P25209 (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-37
Identity = 79/122 (64.75%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 19  STGGGGGVCGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKQILPPNAKISKEAKET 78
           S GGGGG    +  S    G GG G V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET
Sbjct: 7   SPGGGGG----SHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKET 66

Query: 79  MQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREME 138
           +QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YREME
Sbjct: 67  VQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREME 124

Query: 139 GE 141
           G+
Sbjct: 127 GD 124

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BLAST of Tan0002362 vs. ExPASy Swiss-Prot
Match: Q75IZ7 (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-37
Identity = 77/113 (68.14%), Postives = 94/113 (83.19%), Query Frame = 0


Query: 30  TGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISF 89
           +GG S  AG G +   +EQDR LPIANV RIMK+ LP NAKISK+AKET+QECVSEFISF
Sbjct: 8   SGGPSNYAG-GELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF 67

Query: 90  VTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERA 143
           +TGEASDKC +EKRKT+NGDD+  A+ TLGF+DY +PL+ YL ++RE+EGERA
Sbjct: 68  ITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERA 119

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BLAST of Tan0002362 vs. NCBI nr
Match: XP_023549145.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.3 bits (721), Expect = 2.5e-72
Identity = 143/158 (90.51%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MDDHTGKAERLVEFKYDFSTGGGGGVCGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRI 60
           MDD+T   ERLVEFKYDF+TGGGGGV GSTGGSSEEAGSG  G VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREMEGERAQQNKGCCHSNSNNHDA 159
           DDYAEPLRRYL+RYRE+EGERAQQNKGCC  N+N HDA
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCC--NNNTHDA 156

[Close]

BLAST of Tan0002362 vs. NCBI nr
Match: XP_038876756.1 (nuclear transcription factor Y subunit B-1-like [Benincasa hispida])

HSP 1 Score: 282.0 bits (720), Expect = 3.3e-72
Identity = 142/157 (90.45%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MDDHTGKAERLVEFKYDFSTGGGGGVCGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRI 60
           MD++TG  ERLVEFKYDF+ GGG GV GSTGGSSEEAG+G  G+VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERLVEFKYDFTGGGGSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREMEGERAQQNKGCCHSNSNNHD 158
           DDYAEPLRRYLVRYREMEGERAQQNKGCC  N+NNHD
Sbjct: 121 DDYAEPLRRYLVRYREMEGERAQQNKGCC--NNNNHD 155

[Close]

BLAST of Tan0002362 vs. NCBI nr
Match: XP_022991512.1 (nuclear transcription factor Y subunit B-1 [Cucurbita maxima])

HSP 1 Score: 281.6 bits (719), Expect = 4.3e-72
Identity = 143/158 (90.51%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MDDHTGKAERLVEFKYDFSTGGGGGVCGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRI 60
           MDD+T   ERLVEFKYDF+TGGGGGV GSTGGSSEEAGSG  G VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREMEGERAQQNKGCCHSNSNNHDA 159
           DDYAEPLRRYL+RYRE+EGERAQQNKGCC  N+N HDA
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCC--NNNAHDA 156

[Close]

BLAST of Tan0002362 vs. NCBI nr
Match: XP_022953161.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita moschata])

HSP 1 Score: 277.7 bits (709), Expect = 6.2e-71
Identity = 143/159 (89.94%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MDDHTGKAERLVEFKYDFSTGGG-GGVCGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGR 60
           MDD+T   ERLVEFKYDF+TGGG GGV GSTGGSSEEAGSG  G VKEQDRLLPIANVGR
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGSGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR 60

Query: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120
           IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120

Query: 121 FDDYAEPLRRYLVRYREMEGERAQQNKGCCHSNSNNHDA 159
           FDDYAEPLRRYL+RYRE+EGERAQQNKGCC  N+N HDA
Sbjct: 121 FDDYAEPLRRYLIRYREIEGERAQQNKGCC--NNNTHDA 157

[Close]

BLAST of Tan0002362 vs. NCBI nr
Match: XP_008451614.1 (PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo])

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 137/157 (87.26%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MDDHTGKAERLVEFKYDFSTGGGGGVCGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRI 60
           MD++TG  ER VEFKYDF+ GG  GV GSTGGSSEEAG+G  G+VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREMEGERAQQNKGCCHSNSNNHD 158
           DDYAEPLRRYLVRYR+MEGERAQQNKGCC++N+NN++
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNN 157

[Close]

BLAST of Tan0002362 vs. ExPASy TrEMBL
Match: A0A6J1JM11 (nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111488106 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.1e-72
Identity = 143/158 (90.51%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MDDHTGKAERLVEFKYDFSTGGGGGVCGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRI 60
           MDD+T   ERLVEFKYDF+TGGGGGV GSTGGSSEEAGSG  G VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREMEGERAQQNKGCCHSNSNNHDA 159
           DDYAEPLRRYL+RYRE+EGERAQQNKGCC  N+N HDA
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCC--NNNAHDA 156

[Close]

BLAST of Tan0002362 vs. ExPASy TrEMBL
Match: A0A6J1GM85 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN=LOC111455784 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.0e-71
Identity = 143/159 (89.94%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MDDHTGKAERLVEFKYDFSTGGG-GGVCGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGR 60
           MDD+T   ERLVEFKYDF+TGGG GGV GSTGGSSEEAGSG  G VKEQDRLLPIANVGR
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGSGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR 60

Query: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120
           IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120

Query: 121 FDDYAEPLRRYLVRYREMEGERAQQNKGCCHSNSNNHDA 159
           FDDYAEPLRRYL+RYRE+EGERAQQNKGCC  N+N HDA
Sbjct: 121 FDDYAEPLRRYLIRYREIEGERAQQNKGCC--NNNTHDA 157

[Close]

BLAST of Tan0002362 vs. ExPASy TrEMBL
Match: A0A1S3BT19 (nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC103492848 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 5.1e-71
Identity = 137/157 (87.26%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MDDHTGKAERLVEFKYDFSTGGGGGVCGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRI 60
           MD++TG  ER VEFKYDF+ GG  GV GSTGGSSEEAG+G  G+VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREMEGERAQQNKGCCHSNSNNHD 158
           DDYAEPLRRYLVRYR+MEGERAQQNKGCC++N+NN++
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNN 157

[Close]

BLAST of Tan0002362 vs. ExPASy TrEMBL
Match: A0A0A0K954 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G395250 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.5e-70
Identity = 135/157 (85.99%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MDDHTGKAERLVEFKYDFSTGGGGGVCGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRI 60
           MD++TG  ER +EFKYDF+ GG  GV GSTGGSSEEAG+G  G+VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREMEGERAQQNKGCCHSNSNNHD 158
           DDYAEPLRRYLVRYR+MEGERAQQNKGCC++++NN++
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNN 157

[Close]

BLAST of Tan0002362 vs. ExPASy TrEMBL
Match: A0A5A7VLD2 (Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002260 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.4e-68
Identity = 133/149 (89.26%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 9   ERLVEFKYDFSTGGGGGVCGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKQILPPN 68
           ER VEFKYDF+ GG  GV GSTGGSSEEAG+G  G+VKEQDRLLPIANVGRIMKQILPPN
Sbjct: 3   ERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPN 62

Query: 69  AKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLR 128
           AKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLR
Sbjct: 63  AKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLR 122

Query: 129 RYLVRYREMEGERAQQNKGCCHSNSNNHD 158
           RYLVRYR+MEGERAQQNKGCC++N+NN++
Sbjct: 123 RYLVRYRDMEGERAQQNKGCCNNNNNNNN 151

[Close]

BLAST of Tan0002362 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 172.2 bits (435), Expect = 3.4e-43
Identity = 87/113 (76.99%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 44  IVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKR 103
           +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 104 KTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQN-KGCCHSNSNN 156
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+   + KG   S+ +N
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSSPDN 160

[Close]

BLAST of Tan0002362 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-39
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 34  SEEAGSGGV--GIVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG GG   G V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCHS 153
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+    NKG   S
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NKGSGKS 125

Query: 154 -NSNNHDA 159
            + +N DA
Sbjct: 126 GDGSNRDA 129

[Close]

BLAST of Tan0002362 vs. TAIR 10
Match: AT2G38880.3 (nuclear factor Y, subunit B1 )

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-39
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 34  SEEAGSGGV--GIVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG GG   G V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCHS 153
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+    NKG   S
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NKGSGKS 125

Query: 154 -NSNNHDA 159
            + +N DA
Sbjct: 126 GDGSNRDA 129

[Close]

BLAST of Tan0002362 vs. TAIR 10
Match: AT2G38880.1 (nuclear factor Y, subunit B1 )

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-39
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 34  SEEAGSGGV--GIVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG GG   G V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCHS 153
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+    NKG   S
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NKGSGKS 125

Query: 154 -NSNNHDA 159
            + +N DA
Sbjct: 126 GDGSNRDA 129

[Close]

BLAST of Tan0002362 vs. TAIR 10
Match: AT2G38880.5 (nuclear factor Y, subunit B1 )

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-39
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 34  SEEAGSGGV--GIVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG GG   G V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCHS 153
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+    NKG   S
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NKGSGKS 125

Query: 154 -NSNNHDA 159
            + +N DA
Sbjct: 126 GDGSNRDA 129

The following BLAST results are available for this feature:

BLAST of Tan0002362 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82248	4.8e-42	76.99	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SLG0	4.2e-38	65.63	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q60EQ4	5.5e-38	64.80	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]
P25209	1.2e-37	64.75	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]
Q75IZ7	1.6e-37	68.14	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Tan0002362 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549145.1	2.5e-72	90.51	nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038876756.1	3.3e-72	90.45	nuclear transcription factor Y subunit B-1-like [Benincasa hispida]	[more]
XP_022991512.1	4.3e-72	90.51	nuclear transcription factor Y subunit B-1 [Cucurbita maxima]	[more]
XP_022953161.1	6.2e-71	89.94	nuclear transcription factor Y subunit B-1-like [Cucurbita moschata]	[more]
XP_008451614.1	1.1e-70	87.26	PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]	[more]

BLAST of Tan0002362 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JM11	2.1e-72	90.51	nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GM85	3.0e-71	89.94	nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3BT19	5.1e-71	87.26	nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC1034928...	[more]
A0A0A0K954	2.5e-70	85.99	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G3952...	[more]
A0A5A7VLD2	2.4e-68	89.26	Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of Tan0002362 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47810.1	3.4e-43	76.99	nuclear factor Y, subunit B5	[more]
AT2G38880.2	3.0e-39	65.63	nuclear factor Y, subunit B1	[more]
AT2G38880.3	3.0e-39	65.63	nuclear factor Y, subunit B1	[more]
AT2G38880.1	3.0e-39	65.63	nuclear factor Y, subunit B1	[more]
AT2G38880.5	3.0e-39	65.63	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 117..135 score: 34.09 coord: 79..97 score: 51.32 coord: 98..116 score: 34.21
None	No IPR available	PANTHER	PTHR11064:SF106	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5	coord: 35..154
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 44..158 e-value: 1.4E-43 score: 150.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 48..155
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 51..115 e-value: 6.7E-27 score: 93.5
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 35..154
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 82..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002362.1	Tan0002362.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding