Tan0001664 (gene) Snake gourd v1

Overview


Name	Tan0001664
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	LysM domain-containing protein
Location	LG06: 70285503 .. 70285960 (+)
RNA-Seq Expression	Tan0001664
Synteny	Tan0001664

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGTAGCCTCCAATTCCTTTTCGTCTGCTCCACTTCTCGAAACCGCCATAACTGACCGCTTTCCTCCACCTCCTCTCCCTCTTTATATACCAAATTCCAAATTCCAAATCCCCAAAATCAAATTTCATTTTTCCCTCTCTCTCTCTTCTCTCTCATGGCTTCCTCAACATTCTGCTACTCTGTTTTCATTTTCATGGCGCTCATACTGATCCTCGCCTCTGCAGAATCCGGCGACAAGCAGCATCAGCCTTGCGACGAGATCTACGTCGTCAAAGAAGGCGAGTCGCTGCACACGATCAGCGCCAAGTGCGGCGATCCCTTCATAATCGACGAGAATCCGCAGATTCAAGACTCCGATGATGTTTTCCCTGGACTTGTGATTAAAATTACGCCAACCATGAACTCCAGGAAGTTGTTATTCAGGTGAGGAGATGTAGCTAGCTAGCCGAATTCCCGT

mRNA sequence

GTGGTAGCCTCCAATTCCTTTTCGTCTGCTCCACTTCTCGAAACCGCCATAACTGACCGCTTTCCTCCACCTCCTCTCCCTCTTTATATACCAAATTCCAAATTCCAAATCCCCAAAATCAAATTTCATTTTTCCCTCTCTCTCTCTTCTCTCTCATGGCTTCCTCAACATTCTGCTACTCTGTTTTCATTTTCATGGCGCTCATACTGATCCTCGCCTCTGCAGAATCCGGCGACAAGCAGCATCAGCCTTGCGACGAGATCTACGTCGTCAAAGAAGGCGAGTCGCTGCACACGATCAGCGCCAAGTGCGGCGATCCCTTCATAATCGACGAGAATCCGCAGATTCAAGACTCCGATGATGTTTTCCCTGGACTTGTGATTAAAATTACGCCAACCATGAACTCCAGGAAGTTGTTATTCAGGTGAGGAGATGTAGCTAGCTAGCCGAATTCCCGT

Coding sequence (CDS)

ATGGCTTCCTCAACATTCTGCTACTCTGTTTTCATTTTCATGGCGCTCATACTGATCCTCGCCTCTGCAGAATCCGGCGACAAGCAGCATCAGCCTTGCGACGAGATCTACGTCGTCAAAGAAGGCGAGTCGCTGCACACGATCAGCGCCAAGTGCGGCGATCCCTTCATAATCGACGAGAATCCGCAGATTCAAGACTCCGATGATGTTTTCCCTGGACTTGTGATTAAAATTACGCCAACCATGAACTCCAGGAAGTTGTTATTCAGGTGA

Protein sequence

MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMNSRKLLFR

Homology

[Close]

BLAST of Tan0001664 vs. NCBI nr
Match: XP_022959284.1 (uncharacterized protein LOC111460313 [Cucurbita moschata])

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-28
Identity = 70/90 (77.78%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1   MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDE 60
           MASST C SVFIFMAL+L LASA+SG     PCD+IY+V+EGESLH+ISAKC DPFI+D 
Sbjct: 41  MASSTSCCSVFIFMALML-LASAQSG-----PCDDIYLVREGESLHSISAKCDDPFIVDY 100

Query: 61  NPQIQDSDDVFPGLVIKITPTMNSRKLLFR 91
           NPQIQDSDDVFPGL+IKITP++NSRKLLFR
Sbjct: 101 NPQIQDSDDVFPGLLIKITPSLNSRKLLFR 124

[Close]

BLAST of Tan0001664 vs. NCBI nr
Match: KAG7013356.1 (hypothetical protein SDJN02_23520, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-28
Identity = 70/90 (77.78%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1  MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDE 60
          MASST C SVFIFMAL+L LASA+SG     PCD+IY+V+EGESLH+ISAKC DPFI+D 
Sbjct: 1  MASSTSCCSVFIFMALML-LASAQSG-----PCDDIYLVREGESLHSISAKCDDPFIVDY 60

Query: 61 NPQIQDSDDVFPGLVIKITPTMNSRKLLFR 91
          NPQIQDSDDVFPGL+IKITP++NSRKLLFR
Sbjct: 61 NPQIQDSDDVFPGLLIKITPSLNSRKLLFR 84

[Close]

BLAST of Tan0001664 vs. NCBI nr
Match: XP_023006696.1 (uncharacterized protein LOC111499354 [Cucurbita maxima])

HSP 1 Score: 135.6 bits (340), Expect = 2.2e-28
Identity = 69/90 (76.67%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1   MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDE 60
           MASS  CYSVFIFMAL+L LASA+SG     PCD+IY+V+EGESLH+ISAKC DPFI+D 
Sbjct: 41  MASSISCYSVFIFMALML-LASAQSG-----PCDDIYLVREGESLHSISAKCDDPFIVDY 100

Query: 61  NPQIQDSDDVFPGLVIKITPTMNSRKLLFR 91
           NPQIQDSDDVFPGL+IKITP++NSRKL FR
Sbjct: 101 NPQIQDSDDVFPGLLIKITPSLNSRKLFFR 124

[Close]

BLAST of Tan0001664 vs. NCBI nr
Match: KAG6574776.1 (hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.7 bits (335), Expect = 8.2e-28
Identity = 69/90 (76.67%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1   MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDE 60
           MASST C SVFI MAL+L LASA+SG     PCD+IY+V+EGESLH+ISAKC DPFI+D 
Sbjct: 41  MASSTSCCSVFILMALML-LASAQSG-----PCDDIYLVREGESLHSISAKCDDPFIVDY 100

Query: 61  NPQIQDSDDVFPGLVIKITPTMNSRKLLFR 91
           NPQIQDSDDVFPGL+IKITP++NSRKLLFR
Sbjct: 101 NPQIQDSDDVFPGLLIKITPSLNSRKLLFR 124

[Close]

BLAST of Tan0001664 vs. NCBI nr
Match: KGN46208.1 (hypothetical protein Csa_005039 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-23
Identity = 61/83 (73.49%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 8  YSVFI-FMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQD 67
          +SVF+  MALI+++ASAES     +PCD+IYVVKEGE+LHTISAKCGDPFI+D NP IQD
Sbjct: 5  FSVFVTVMALIIVVASAES-----RPCDDIYVVKEGETLHTISAKCGDPFIVDNNPHIQD 64

Query: 68 SDDVFPGLVIKITPTM-NSRKLL 89
          SDDVFPGL+I+ITPT+ NSRKLL
Sbjct: 65 SDDVFPGLLIQITPTLINSRKLL 82

[Close]

BLAST of Tan0001664 vs. ExPASy TrEMBL
Match: A0A6J1H7L7 (uncharacterized protein LOC111460313 OS=Cucurbita moschata OX=3662 GN=LOC111460313 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.0e-29
Identity = 70/90 (77.78%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1   MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDE 60
           MASST C SVFIFMAL+L LASA+SG     PCD+IY+V+EGESLH+ISAKC DPFI+D 
Sbjct: 41  MASSTSCCSVFIFMALML-LASAQSG-----PCDDIYLVREGESLHSISAKCDDPFIVDY 100

Query: 61  NPQIQDSDDVFPGLVIKITPTMNSRKLLFR 91
           NPQIQDSDDVFPGL+IKITP++NSRKLLFR
Sbjct: 101 NPQIQDSDDVFPGLLIKITPSLNSRKLLFR 124

[Close]

BLAST of Tan0001664 vs. ExPASy TrEMBL
Match: A0A6J1KYG6 (uncharacterized protein LOC111499354 OS=Cucurbita maxima OX=3661 GN=LOC111499354 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.0e-28
Identity = 69/90 (76.67%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1   MASSTFCYSVFIFMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDE 60
           MASS  CYSVFIFMAL+L LASA+SG     PCD+IY+V+EGESLH+ISAKC DPFI+D 
Sbjct: 41  MASSISCYSVFIFMALML-LASAQSG-----PCDDIYLVREGESLHSISAKCDDPFIVDY 100

Query: 61  NPQIQDSDDVFPGLVIKITPTMNSRKLLFR 91
           NPQIQDSDDVFPGL+IKITP++NSRKL FR
Sbjct: 101 NPQIQDSDDVFPGLLIKITPSLNSRKLFFR 124

[Close]

BLAST of Tan0001664 vs. ExPASy TrEMBL
Match: A0A0A0K9P3 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G074605 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 61/83 (73.49%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 8  YSVFI-FMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQD 67
          +SVF+  MALI+++ASAES     +PCD+IYVVKEGE+LHTISAKCGDPFI+D NP IQD
Sbjct: 5  FSVFVTVMALIIVVASAES-----RPCDDIYVVKEGETLHTISAKCGDPFIVDNNPHIQD 64

Query: 68 SDDVFPGLVIKITPTM-NSRKLL 89
          SDDVFPGL+I+ITPT+ NSRKLL
Sbjct: 65 SDDVFPGLLIQITPTLINSRKLL 82

[Close]

BLAST of Tan0001664 vs. ExPASy TrEMBL
Match: A0A5D3DLK6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00150 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.5e-22
Identity = 60/83 (72.29%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 8  YSVFI-FMALILILASAESGDKQHQPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQD 67
          +SVFI  MALI+++ASAES     +PC++IYVVKEGE+LHTISAKC DPFI+D NP IQD
Sbjct: 5  FSVFITVMALIMVVASAES-----KPCNDIYVVKEGETLHTISAKCRDPFIVDNNPHIQD 64

Query: 68 SDDVFPGLVIKITPTM-NSRKLL 89
          SDDVFPGL+I+ITPT+ NSRKLL
Sbjct: 65 SDDVFPGLLIQITPTLINSRKLL 82

[Close]

BLAST of Tan0001664 vs. ExPASy TrEMBL
Match: A0A6A1W7P5 (LysM domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR2G005656 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19
Identity = 51/94 (54.26%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 1   MASSTFCYSVFIFMALILILASAESGDKQ-----------HQPCDEIYVVKEGESLHTIS 60
           M+    CY+  +F+A++L+L+  ESGD+            ++PCDEIYVV+EGE+LH+IS
Sbjct: 12  MSERVSCYAA-LFLAVLLVLSYCESGDQGELAVRTTRKNINKPCDEIYVVREGETLHSIS 71

Query: 61  AKCGDPFIIDENPQIQDSDDVFPGLVIKITPTMN 84
            KCGDP+I++ENP I D DDVFPGLVIKITP  N
Sbjct: 72  EKCGDPYIVEENPHIHDPDDVFPGLVIKITPFKN 104

[Close]

BLAST of Tan0001664 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 92.0 bits (227), Expect = 2.5e-19
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 4   STFCYSVFIFMALILILASAESGDKQH--------QPCDEIYVVKEGESLHTISAKCGDP 63
           S +C S  + ++LIL+L+  E+             +PC+EIY+V EGE+LHTI  KCGDP
Sbjct: 12  SAWC-SAVVLLSLILLLSVRENNASNSIRGSQFSTKPCEEIYIVGEGETLHTIGDKCGDP 71

Query: 64  FIIDENPQIQDSDDVFPGLVIKITPTMNSRKL 88
           FI++ NP I D DDVFPGLV+KI P   +RKL
Sbjct: 72  FIVERNPHIHDPDDVFPGLVLKIAPFYFNRKL 102

[Close]

BLAST of Tan0001664 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 81.3 bits (199), Expect = 4.5e-16
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 33  CDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKITPTM 83
           CDEIY VKEGE+L TIS KCGDP+I++ NP I D DD+FPGL+I+ITP++
Sbjct: 60  CDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPSL 109

[Close]

BLAST of Tan0001664 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-15
Identity = 32/48 (66.67%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 31  QPCDEIYVVKEGESLHTISAKCGDPFIIDENPQIQDSDDVFPGLVIKI 79
           +PC+E+YVV EG++LH+IS KCGDPFI++ NP I D DDVFPGL+IK+
Sbjct: 57  RPCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

The following BLAST results are available for this feature:

BLAST of Tan0001664 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001664 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959284.1	1.6e-28	77.78	uncharacterized protein LOC111460313 [Cucurbita moschata]	[more]
KAG7013356.1	1.6e-28	77.78	hypothetical protein SDJN02_23520, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023006696.1	2.2e-28	76.67	uncharacterized protein LOC111499354 [Cucurbita maxima]	[more]
KAG6574776.1	8.2e-28	76.67	hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN46208.1	2.1e-23	73.49	hypothetical protein Csa_005039 [Cucumis sativus]	[more]

BLAST of Tan0001664 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7L7	8.0e-29	77.78	uncharacterized protein LOC111460313 OS=Cucurbita moschata OX=3662 GN=LOC1114603...	[more]
A0A6J1KYG6	1.0e-28	76.67	uncharacterized protein LOC111499354 OS=Cucurbita maxima OX=3661 GN=LOC111499354...	[more]
A0A0A0K9P3	1.0e-23	73.49	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G074605 PE=4 S...	[more]
A0A5D3DLK6	2.5e-22	72.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6A1W7P5	1.5e-19	54.26	LysM domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR2G005656 PE...	[more]

BLAST of Tan0001664 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62150.1	2.5e-19	50.00	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	4.5e-16	68.00	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	1.3e-15	66.67	peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 37..79 e-value: 8.0E-5 score: 22.6
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 36..78 e-value: 5.17859E-6 score: 37.8501
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 24..86 e-value: 1.8E-8 score: 35.8
None	No IPR available	PANTHER	PTHR33648:SF23	LYSM DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 2..88
None	No IPR available	PANTHER	PTHR33648	EMBRYO SAC 1	coord: 2..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001664.1	Tan0001664.1	mRNA