Tan0001294 (gene) Snake gourd v1

Overview
NameTan0001294
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSignal recognition particle 9 kDa protein
LocationLG07: 74021573 .. 74023698 (-)
RNA-Seq ExpressionTan0001294
SyntenyTan0001294
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTACATTACCTCCTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAATTCCGTAAGTTATAACTTCGAATTCCGATTCCCTAGGTATCGTTTTTCTGTTTGAATGCTGAGAAACTAACATCACTGATGAGAAAATAGATCGCGTCGTTGTATTGTTATTCTCTAGCCTTTTTAACTGTTGAATTACGTGAAACTGAGCAAATCAGCCCCGAGGACTTGAATGATATGAATTGGAGCATAATGAATTGTGCAGGGCGTTCTAATTTATCTATCTGACTAACTTGGTTTCTGTTAACATTATCTGCGATTGCGAACTTACAGTTTGCTCGTATGTTCCGTTTATTGCAACTTTCGTCGTATTTTGATTCATTCTAAATGCGACCACTGTTTTCTTTCAATCCTATTGGAAATTTAGACGCGGTACAACGTAAAGTATCGACACTGCGATGGGAAGCTGGTTCTTAAGGTCACCGATAACCGTGAGGTAAGGAATTGTTTGTTAGATCATTGATTAACATCTCGTGTTCTTATGATTAGTGATCAGGATGCCAATTCTGATTATTGATTTCCAACTAAATGCATGGGTCTATGGTTAATGTGGCATAATTTTAGCCGTATGAATATTATATGCCAATGTTTGAAGATGCGTGTTGAGTCTTTGATGCATGTGTATCCAAGCAGACTTGTGATCAAGTTTTCGTTCTGTATATGCTTCTCCGCTTTATTCTTCTGTAAACTGTCGAGTAGACAGCAAGTGAATTCAATGCCTGTTAAATTGGACGCCACCGTTTTATGCAACTACAAACCAACTAGCAGTTTAGAAATCAGGTCTTATACCTTGTCGCTAATCCGAACAAAAACTTTCACAGACTGTTTTAGTTTCTTTTATTATATTGACCGAAGAGATATTTCATAATCATTCTAACGGAAGATTAGGATGTGGGAGTGTTTGTTACCATGTTAAGAGTGGTTTTCTTTTCTTTCTCACGTGGAAAATTGGAAACTAATTCGGGCGAGGTACATGGGTGCAAGATATCAACTAAGAATAGGATAAGTGAAATTCATATATTGATGCCTGCTTGTATGGGGAATTTACTGTTTGTGTGCAACATACCCTCGTGGTAAACTGAGACAAGTCAATGATCTTGTATTGAAACGAACACTATGGAAGTTAACCAATTGGCACAAGGGCGTATGTCAAATCATAACAATATCATTATCGGAATAGTAGTTCTTATCTTTTTAGACGTGTGAGGTCTACTAATTTTCTCCTTTTTTTCCTTCCTTCTGTTTTCTTCCTGTTCGCTAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGACGTCAAGAAGATGGAAAAACTCAATAACATATTCTTCACTCTGATGGCCCGGGGCCCTGATGGTATTTTTCTTCGAATTTGTTGTTAATGGAGGATCTGAATGCTCTGTTGAATAATAAATAACCACTTGCTTTTGACATGATTTTGTACTAAAATTTTATTAAGATTTGAGTCCTTGTTGTCTATATGGATGAATGGAATGAAAGGTATATATTCTCTGATTGCATGAAAGTCCCATATCCTTAAATTTCAGCAACTTGTAAATTAGTTGCATGATAATATCAGTACTTAGCCAACAAGAGCATAACTCAACTGGCATCGAGTATGACTCATGACCAAGAGGTCATGAGTTTGAATCCCCCCATTCCCAATTGATGTACTAAAATATATATATATATATATATATCAGTACTTGAAGGACGAGTTCACTTCTCCTCTGAATACAGTTTGTGTGAATGAATATAGACCTGCCTGTAACTTTGTTAAATTGGTGAAAATGGTTCAGTGTGCCTGGAGTTCTCACAATCAATGATATAAAAAATGCAACCCTCATTCATGGACCATCTTTCTTTATCCTTTTTTTTTTAATATTATTATTTACCCAGCAATGCTTCAACTTGTAAGTCTAATGTGCACTCAGTTCTACTAGTAGGAATGCTCTTATATTTTTCCTTTCTCTTTTGTGAAGTGGATATATCGGAAGTGACGGGCAAAGAGCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAATGA

mRNA sequence

ATGGTGTACATTACCTCCTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAATTCCACGCGGTACAACGTAAAGTATCGACACTGCGATGGGAAGCTGGTTCTTAAGGTCACCGATAACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGACGTCAAGAAGATGGAAAAACTCAATAACATATTCTTCACTCTGATGGCCCGGGGCCCTGATGTGGATATATCGGAAGTGACGGGCAAAGAGCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAATGA

Coding sequence (CDS)

ATGGTGTACATTACCTCCTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAATTCCACGCGGTACAACGTAAAGTATCGACACTGCGATGGGAAGCTGGTTCTTAAGGTCACCGATAACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGACGTCAAGAAGATGGAAAAACTCAATAACATATTCTTCACTCTGATGGCCCGGGGCCCTGATGTGGATATATCGGAAGTGACGGGCAAAGAGCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAATGA

Protein sequence

MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ
Homology
[Close]
BLAST of Tan0001294 vs. ExPASy Swiss-Prot
Match: Q9SMU7 (Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP9 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.5e-47
Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = 0 

Query: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVK 60
           MVYI SWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+ K
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVD+SEVTGKEQ++ QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

[Close]
BLAST of Tan0001294 vs. ExPASy Swiss-Prot
Match: O04438 (Signal recognition particle 9 kDa protein OS=Zea mays OX=4577 GN=SRP9 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.3e-44
Identity = 84/103 (81.55%), Postives = 93/103 (90.29%), Query Frame = 0 

Query: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVK 60
           MVY+ SW+EFVERSVQLFR DPN+TRY +KYRHC+GKLVLKVTD+RECLKFKTDQAQD K
Sbjct: 1   MVYVDSWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 104
           KMEKLNNIFF LM RGPDVDISEV+GKEQ + Q  KKGRGR+Q
Sbjct: 61  KMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 103

[Close]
BLAST of Tan0001294 vs. ExPASy Swiss-Prot
Match: Q55GL2 (Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum OX=44689 GN=srp9 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.5e-16
Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = 0 

Query: 2  VYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKK 61
          +YI  WDEF ++S QL+R+DP  TR++ K+RH +GK+VLKVT++   LKF+TD+  D K+
Sbjct: 1  MYIEDWDEFYDKSEQLYRTDPKRTRFSFKFRHVEGKVVLKVTNDTVNLKFQTDKENDFKR 60

Query: 62 MEKLNNIFFTL 73
          ++++N++FF L
Sbjct: 61 IDQINSLFFRL 71

[Close]
BLAST of Tan0001294 vs. ExPASy Swiss-Prot
Match: P34642 (Signal recognition particle 9 kDa protein OS=Caenorhabditis elegans OX=6239 GN=ZK512.4 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.0e-13
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 0 

Query: 1  MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVK 60
          M Y TSWDEF + + +L  ++P   R+  KY H  G+LVLK+TD+  CL++ T+Q QDVK
Sbjct: 1  MTYFTSWDEFAKAAERLHSANPEKCRFVTKYNHTKGQLVLKLTDDVVCLQYSTNQLQDVK 60

Query: 61 KMEKLNN 68
          K+EKL++
Sbjct: 61 KLEKLSS 67

[Close]
BLAST of Tan0001294 vs. ExPASy Swiss-Prot
Match: P49458 (Signal recognition particle 9 kDa protein OS=Homo sapiens OX=9606 GN=SRP9 PE=1 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 8.8e-13
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 0 

Query: 6  SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVKKMEKL 65
          +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL +KTDQAQDVKK+EK 
Sbjct: 6  TWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKF 65

Query: 66 NNIFFTLM 74
          ++    LM
Sbjct: 66 HSQLMRLM 73

[Close]
BLAST of Tan0001294 vs. NCBI nr
Match: XP_022146059.1 (signal recognition particle 9 kDa protein isoform X1 [Momordica charantia] >XP_022146061.1 signal recognition particle 9 kDa protein isoform X1 [Momordica charantia])

HSP 1 Score: 209.5 bits (532), Expect = 1.3e-50
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVK 60
           MVYITSWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQD K
Sbjct: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Tan0001294 vs. NCBI nr
Match: XP_022963515.1 (signal recognition particle 9 kDa protein [Cucurbita moschata] >XP_022963516.1 signal recognition particle 9 kDa protein [Cucurbita moschata] >KAG7011249.1 Signal recognition particle 9 kDa protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.8 bits (525), Expect = 8.7e-50
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVK 60
           MVYI SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQD K
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Tan0001294 vs. NCBI nr
Match: XP_038887366.1 (signal recognition particle 9 kDa protein [Benincasa hispida] >XP_038887367.1 signal recognition particle 9 kDa protein [Benincasa hispida])

HSP 1 Score: 205.3 bits (521), Expect = 2.5e-49
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVK 60
           MVY+ SWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQD K
Sbjct: 1   MVYVASWDEFVERSVQLFRSDPNSTRYNMKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Tan0001294 vs. NCBI nr
Match: KAG6571487.1 (Signal recognition particle 9 kDa protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 205.3 bits (521), Expect = 2.5e-49
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVK 60
           MVYI SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQD K
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGP+VDISEVTGK+QVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPEVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Tan0001294 vs. NCBI nr
Match: XP_022967500.1 (signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967501.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967502.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967503.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 204.9 bits (520), Expect = 3.3e-49
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVK 60
           MVYI SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQD K
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 104
           KMEKL+NIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLDNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Tan0001294 vs. ExPASy TrEMBL
Match: A0A6J1CY87 (Signal recognition particle 9 kDa protein OS=Momordica charantia OX=3673 GN=LOC111015357 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.5e-51
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVK 60
           MVYITSWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQD K
Sbjct: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Tan0001294 vs. ExPASy TrEMBL
Match: A0A6J1HI87 (Signal recognition particle 9 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111463821 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.2e-50
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVK 60
           MVYI SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQD K
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Tan0001294 vs. ExPASy TrEMBL
Match: A0A6J1HSA1 (Signal recognition particle 9 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111466989 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.6e-49
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVK 60
           MVYI SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQD K
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 104
           KMEKL+NIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLDNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Tan0001294 vs. ExPASy TrEMBL
Match: A0A6J1K1A1 (Signal recognition particle 9 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111490803 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.7e-49
Identity = 98/103 (95.15%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVK 60
           MVYI SWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQD K
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 104
           KMEKLNNIFF LMARGPDVDISEVTGKEQ DAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRGRKQ 103

[Close]
BLAST of Tan0001294 vs. ExPASy TrEMBL
Match: A0A1S3BLU0 (Signal recognition particle 9 kDa protein OS=Cucumis melo OX=3656 GN=LOC103491251 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.7e-49
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVK 60
           MVYI SWDEFVERSVQLFRSDP STRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQD K
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Tan0001294 vs. TAIR 10
Match: AT3G49100.1 (Signal recognition particle, SRP9/SRP14 subunit )

HSP 1 Score: 189.1 bits (479), Expect = 1.8e-48
Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = 0 

Query: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDVK 60
           MVYI SWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+ K
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVD+SEVTGKEQ++ QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

The following BLAST results are available for this feature:
BLAST of Tan0001294 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SMU72.5e-4786.41Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP... [more]
O044383.3e-4481.55Signal recognition particle 9 kDa protein OS=Zea mays OX=4577 GN=SRP9 PE=3 SV=1[more]
Q55GL26.5e-1649.30Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum OX=44689 G... [more]
P346424.0e-1349.25Signal recognition particle 9 kDa protein OS=Caenorhabditis elegans OX=6239 GN=Z... [more]
P494588.8e-1350.00Signal recognition particle 9 kDa protein OS=Homo sapiens OX=9606 GN=SRP9 PE=1 S... [more]
BLAST of Tan0001294 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022146059.11.3e-5098.06signal recognition particle 9 kDa protein isoform X1 [Momordica charantia] >XP_0... [more]
XP_022963515.18.7e-5097.09signal recognition particle 9 kDa protein [Cucurbita moschata] >XP_022963516.1 s... [more]
XP_038887366.12.5e-4995.15signal recognition particle 9 kDa protein [Benincasa hispida] >XP_038887367.1 si... [more]
KAG6571487.12.5e-4996.12Signal recognition particle 9 kDa protein, partial [Cucurbita argyrosperma subsp... [more]
XP_022967500.13.3e-4996.12signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967501.... [more]
BLAST of Tan0001294 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CY876.5e-5198.06Signal recognition particle 9 kDa protein OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A6J1HI874.2e-5097.09Signal recognition particle 9 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1HSA11.6e-4996.12Signal recognition particle 9 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1K1A12.7e-4995.15Signal recognition particle 9 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A1S3BLU02.7e-4995.15Signal recognition particle 9 kDa protein OS=Cucumis melo OX=3656 GN=LOC10349125... [more]
BLAST of Tan0001294 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G49100.11.8e-4886.41Signal recognition particle, SRP9/SRP14 subunit [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008832Signal recognition particle, SRP9 subunitPIRSFPIRSF017029SRP9coord: 1..97
e-value: 1.1E-39
score: 132.2
IPR039432SRP9 domainPFAMPF05486SRP9-21coord: 5..66
e-value: 1.4E-11
score: 44.7
IPR009018Signal recognition particle, SRP9/SRP14 subunitGENE3D3.30.720.10Signal recognition particle alu RNA binding heterodimer, srp9/1coord: 2..83
e-value: 5.8E-36
score: 124.2
IPR009018Signal recognition particle, SRP9/SRP14 subunitSUPERFAMILY54762Signal recognition particle alu RNA binding heterodimer, SRP9/14coord: 4..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..97
NoneNo IPR availablePANTHERPTHR12834:SF13SIGNAL RECOGNITION PARTICLE 9 KDA PROTEINcoord: 1..103
IPR039914Signal recognition particle SRP9PANTHERPTHR12834SIGNAL RECOGNITION PARTICLE 9 KDA PROTEINcoord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0001294.1Tan0001294.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045900 negative regulation of translational elongation
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
cellular_component GO:0005786 signal recognition particle, endoplasmic reticulum targeting
cellular_component GO:0048500 signal recognition particle
molecular_function GO:0008312 7S RNA binding