Tan0000710 (gene) Snake gourd v1

Overview
NameTan0000710
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionFanconi anemia group D2 protein
LocationLG06: 11075599 .. 11079207 (-)
RNA-Seq ExpressionTan0000710
SyntenyTan0000710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGAACTCGATTGTTCTGGTTCAGTGTTGGATTTGGGGCAACAGCCGCTTCCATTTCTCAATTCGTCTGGAGAGATCTATTGGCCTACCGATGTGCTCTTTCCTCTGATGCAAGTTTTGTTTTCCCTGAATTTTTTCTTCTTTTTTCCTTTCAAGAAGTTTTTCAGATCGTTATTTTTTTATGCTTTTGATTCTTTTTTTTATCCCGTTGTTTCAGATGGAGCGGAATTTCGACGCACTGGAAGCTAGAATCTCGAATCTCGAGTCTGTTCGAAACCGGAATTCGATTCCATCCGCTGAGGTATTTCTCTTCTTTGGTTACTGATGGAGCTTGAACTACATGCAGAGCTATTGTTTTATACGTGCTATGTGTGTGTATCTTATTCATTAGCTAATCGTCTTTACATGGGCCAATTATTCCTCGACTTTCGGCTGAACTTACTACATTTGGTTGCCAAGCTTAGAATATTAAGTCTTTTAAGTAGGTGGCTGCTATGGTTTGAACTCATTTCCTCTCTTATGACTATTAGGCCAATCACAGTGGTTCAATTATTAAAAATAATCGGCCAAGGGTATTCCATTTTAGTAATGTAATTAGTTTCATGAATGTAAATGGAAGTGGGGCATTTCTTGATGCCTGTAAAAACTTGCATTACTGCAAACATAATTTACTGTCTTTCAACATTGGACAGAGATAGGGATCATTGAATCTCTATTTTTCTCTGCTTTGTTCTTATAATGTATCGGCTCTTGCTTTGGTAGATTGTTAATGCTTTTCATGGGGGATATTCAAATTTTCTTATTTTCAGAAGGATTTTAGATAGTTTGAATAGCCGATTAAAGCATAAATGTAGAGGTAAAACAGATCACTAAATCATTGAGGCAAGGTTCCTTTATTTCCATCTAATCCTTTTTAAGCTATTGAGACCCCTGCCCTAGGATTGCTGAAGGGCTTACGTTTACTATTGTTCATTATTGTATTAATGAACGGTTCTTTTAAAGAATCCAGCCAGATTTGGCTCAAAGTGGTTTCCAGCTTATGAGGGTGAAAGAAGGATGGATGGTTCACTGTGCAATAAAAGGGGGAAACGACTGTAATTGTAGTTGGAATATTTCAAAGCTAGAGGCTCGTGTTAGAGCATTAAGGATCCAACTTTGGCGATGGAGAGATGATTTTTATTTTGTGAATATGAATATGCTTGGCCAAATTCTCATTCATTTGGAGTGAAATGTCAGAATTTTCATGCTGTGTCGGTACTTAAGACGAAGATTATTTTCTAGAATAAGCACTCTAGGAGTTGGAATATTGTGACTAGAAGAAATTTAATAGATGATGAATTCTATGAGCTTATTGAGCTATTAAAGTTCCTAAAAGAAAGACAAACATTGGGGCTGGAAATGATGAGATATTTAGAGAATAGGGTATTTACACATTTTGGTTAATTGAAGGGCACTATGAGAATACTATTGTAGCTTAATTGAAGGGCACTTTGGAATGTTAAAAATCTATAAGTGAATGGCAATGCTTGTTTATGCTTTATGGGTATGTTCAGAGAGTCAAGAGTCAAGACAATGGATGATTATGTGTCGGATTGCAAGATTTGTTGCAGAAGAAGTACTTAGCCATGTCACTAGCTAACCTACTGCAGCCACTCCCAATTTCAGAGCTACCTTTTGGGATGATATTTTTTAGGAAAAATTAGAGAGGAATTACTTCTTTGGGATGATATTACAATATATTTTATTCAGGATCTACTGAGATTGGAGGGGAAAGATGTGATTGTAGTTCTGTTGTCGTTTCTAATGTAATCCTTGAGGGGATTATCAAGCTGTAAGGGGTCCCAAAGTCTATAGTACTAGATGTCTAGACAGAAAACCTCTGTGAGCACCTTTTGGCTGACATTTAAATAGATTGAAACCTTAAGCGTAGTCAACACATCACCTTGGGCTTGGACAATCTGAGGTGGTTAATAGTTACCTGGAAACATACTTGCATTGCTTTGCTTTTGAAGGACCAAAAACTTGGGAAAAGCGAGTGTTACGGTTATCCAAAAAAATAAAAATAAAAAATAACAATGGCATAACACTTCATATCATATTTCAACGAAACAACCCCTTTTAGTTGATGTACGACAGACCCCATCCTCATTCAATACAAACAACCTTTCTCCCCAATTTCTTCAGTTGATTAGTTATTGTAGGAAGGGATGCTGCCCTTAGATGGCCTGAAATTCCAACTCTTCAGGACAAAGAAAATCATGAAAGGGAATGCAAACGCGAAATGGATGTTTAGGGCCTCTTTGTTGGGTGAGATATAATAATTTGGGTCATATAACTCCATGGACTATTACAAACTATTATAACCCACTTAGCGTCCTAAACAGTCTCTTAGTTTGTAGGTTGGGACATGGTCTATTTGAAGTTGCGACCCTATTGTCTGACATACATTAACAGGACAGAGCAATGAGAATTTGTCTCGTAAAATTATGGCCCATTTCAGGTGTTGGAAAGTGGCTTAAGAGCAATGAGAATTTGTCTCGTAATATTATGGCCCATTTCAGGTGTAAATAATCAAGTTTTTTCTGATTTCATCGTGAAAACTGAATTTTACTTTTGGGCTATTAAATGCTCAATTTTTTATGAATTTTACTTTTGTGATATATTATAAAGCATACCCCGTATATATTCTCCCTCTTTATTCTTCTTTTTACAAAGAGAACACATCGGTCGTATTCATTCTTGCTAATATCTTTAGACTCACTTCCATAAAGTTCGAGACAGACTCTGTCTTTCCTTTCCTCACAGCATTTCCTCGTTCCTTGTAACAGGCCAATGACTGAATAATTGATTCTCTGTGGAGCTCGTTATTTAGGTAAGATTTGGCTTGATTTATTATTTAAATTCTTAAACAGTTCAATAATATGGTTGACGGTCATATTTTATGGCAGCAATAATGAGCTTGTCTTGCATCCTGAATAGATGGTCGACTGTGAAATGAATCTTACGTTCTCTTTGATTATGAAAGTAAACTTTTGATAGATTTGATGGTTCTTTTATCAATATATTGACTCGGGGAGTATAAGAACCAGCGTTTTTGAGGCGCAGTTGTAAAAAAATGCTAAGCAAGGTTGCCTCGTGAAATTAAGAACACTCTTCAAAAATACTTATTTACATTTTTCTATTATGCGCCCGAAAAAAAAAAAAAATCTCCAGTGTTGGTGGCTACCCTAAAAGGGCTATTGTGTTTAGTTGCCTCCATTTAAAGAAACACTTATCCGAAGATTTACTTCCCAATTCCAGCCCTCTAATTTTCTGAGTTCATGATTTATCCATATGTCATTTATCATCTACATGCCCTTCAATTTGGTTTCTAGCTATCACCTACCATGATGATGAACATTTGTTCAGTAGGATTATGGGAGATGTAGGGAATAAAAACTCAGTTTTTGCCTAAAAACTTACATTTTTGTATTTTGCCTTTTCTCTTACCTGTATCATCACCTCACCCACACAGGAGGGAAGCAATCTCATCTCATGAATGTCTTGTAGATGGAATTTTGTATCAACAGTTGTGCAGGTGTAACTCCTTTTCTTGCTTTCCCTGA

mRNA sequence

ATGTTGAGAACTCGATTGTTCTGGTTCAGTGTTGGATTTGGGGCAACAGCCGCTTCCATTTCTCAATTCGTCTGGAGAGATCTATTGGCCTACCGATGTGCTCTTTCCTCTGATGCAAGTTTTATGGAGCGGAATTTCGACGCACTGGAAGCTAGAATCTCGAATCTCGAGTCTGTTCGAAACCGGAATTCGATTCCATCCGCTGAGGTATTTCTCTTCTTTGCTATTGTTTTATACGTGCTATGTGTGTGGCCTCTTTGTTGGTTTTTGCCTAAAAACTTACATTTTTGTATTTTGCCTTTTCTCTTACCTGTATCATCACCTCACCCACACAGGAGGGAAGCAATCTCATCTCATGAATGTCTTGTAGATGGAATTTTGTATCAACAGTTGTGCAGGTGTAACTCCTTTTCTTGCTTTCCCTGA

Coding sequence (CDS)

ATGTTGAGAACTCGATTGTTCTGGTTCAGTGTTGGATTTGGGGCAACAGCCGCTTCCATTTCTCAATTCGTCTGGAGAGATCTATTGGCCTACCGATGTGCTCTTTCCTCTGATGCAAGTTTTATGGAGCGGAATTTCGACGCACTGGAAGCTAGAATCTCGAATCTCGAGTCTGTTCGAAACCGGAATTCGATTCCATCCGCTGAGGTATTTCTCTTCTTTGCTATTGTTTTATACGTGCTATGTGTGTGGCCTCTTTGTTGGTTTTTGCCTAAAAACTTACATTTTTGTATTTTGCCTTTTCTCTTACCTGTATCATCACCTCACCCACACAGGAGGGAAGCAATCTCATCTCATGAATGTCTTGTAGATGGAATTTTGTATCAACAGTTGTGCAGGTGTAACTCCTTTTCTTGCTTTCCCTGA

Protein sequence

MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVRNRNSIPSAEVFLFFAIVLYVLCVWPLCWFLPKNLHFCILPFLLPVSSPHPHRREAISSHECLVDGILYQQLCRCNSFSCFP
Homology
[Close]
BLAST of Tan0000710 vs. NCBI nr
Match: KGN44712.1 (hypothetical protein Csa_016169 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 9.2e-26
Identity = 81/129 (62.79%), Postives = 86/129 (66.67%), Query Frame = 0 

Query: 1   MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
           MLRTRLFWFS+GF  TAASIS FVWRDLLAYRCALSSDASFMER+FDALEARISNLES R
Sbjct: 1   MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCALSSDASFMERSFDALEARISNLESAR 60

Query: 61  NRNSIPSAE----------VFLFFAIVLYVLCVWPL--CWFLPKNLHFCILPFLLPVSSP 118
           NRNS+ SAE          V    A VL VLC WP+  CW+           F L     
Sbjct: 61  NRNSVSSAEGATVDKNHVNVLGSVAYVL-VLCRWPMTDCWWSSL--------FSL----- 114

[Close]
BLAST of Tan0000710 vs. NCBI nr
Match: KAG7014563.1 (hypothetical protein SDJN02_24741, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.0 bits (297), Expect = 3.3e-23
Identity = 68/106 (64.15%), Postives = 72/106 (67.92%), Query Frame = 0 

Query: 1   MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASF------------------- 60
           MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSDASF                   
Sbjct: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSDASFVLILKFSCSFTFPGGFQIV 60

Query: 61  --------------MERNFDALEARISNLESVRNRNSIPSAEVFLF 74
                         +ERNFDALEARISNLESVRNR+SIPSAEVFLF
Sbjct: 61  VFDVVGCFFLSLIQIERNFDALEARISNLESVRNRDSIPSAEVFLF 106

[Close]
BLAST of Tan0000710 vs. NCBI nr
Match: XP_022992002.1 (uncharacterized protein LOC111488481 isoform X1 [Cucurbita maxima])

HSP 1 Score: 118.6 bits (296), Expect = 4.3e-23
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSD   +ERNFDALEARISNLESVR
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSIPSAE 70
          NR+SIPSAE
Sbjct: 61 NRDSIPSAE 66

[Close]
BLAST of Tan0000710 vs. NCBI nr
Match: XP_022953273.1 (uncharacterized protein LOC111455871 isoform X1 [Cucurbita moschata])

HSP 1 Score: 118.6 bits (296), Expect = 4.3e-23
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSD   +ERNFDALEARISNLESVR
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSIPSAE 70
          NR+SIPSAE
Sbjct: 61 NRDSIPSAE 66

[Close]
BLAST of Tan0000710 vs. NCBI nr
Match: XP_022992003.1 (uncharacterized protein LOC111488481 isoform X2 [Cucurbita maxima])

HSP 1 Score: 118.6 bits (296), Expect = 4.3e-23
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSD   +ERNFDALEARISNLESVR
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSIPSAE 70
          NR+SIPSAE
Sbjct: 61 NRDSIPSAE 66

[Close]
BLAST of Tan0000710 vs. ExPASy TrEMBL
Match: A0A0A0K8L3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374540 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.5e-26
Identity = 81/129 (62.79%), Postives = 86/129 (66.67%), Query Frame = 0 

Query: 1   MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
           MLRTRLFWFS+GF  TAASIS FVWRDLLAYRCALSSDASFMER+FDALEARISNLES R
Sbjct: 1   MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCALSSDASFMERSFDALEARISNLESAR 60

Query: 61  NRNSIPSAE----------VFLFFAIVLYVLCVWPL--CWFLPKNLHFCILPFLLPVSSP 118
           NRNS+ SAE          V    A VL VLC WP+  CW+           F L     
Sbjct: 61  NRNSVSSAEGATVDKNHVNVLGSVAYVL-VLCRWPMTDCWWSSL--------FSL----- 114

[Close]
BLAST of Tan0000710 vs. ExPASy TrEMBL
Match: A0A6J1JXU9 (uncharacterized protein LOC111488481 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488481 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSD   +ERNFDALEARISNLESVR
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSIPSAE 70
          NR+SIPSAE
Sbjct: 61 NRDSIPSAE 66

[Close]
BLAST of Tan0000710 vs. ExPASy TrEMBL
Match: A0A6J1JNH5 (uncharacterized protein LOC111488481 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488481 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSD   +ERNFDALEARISNLESVR
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSIPSAE 70
          NR+SIPSAE
Sbjct: 61 NRDSIPSAE 66

[Close]
BLAST of Tan0000710 vs. ExPASy TrEMBL
Match: A0A6J1GP63 (uncharacterized protein LOC111455871 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455871 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSD   +ERNFDALEARISNLESVR
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSIPSAE 70
          NR+SIPSAE
Sbjct: 61 NRDSIPSAE 66

[Close]
BLAST of Tan0000710 vs. ExPASy TrEMBL
Match: A0A6J1GMY6 (uncharacterized protein LOC111455871 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455871 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSD   +ERNFDALEARISNLESVR
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSIPSAE 70
          NR+SIPSAE
Sbjct: 61 NRDSIPSAE 66

[Close]
BLAST of Tan0000710 vs. TAIR 10
Match: AT3G07568.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 8.1e-12
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0 

Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRL WF++GF  T  SI+  VWRDL A R A+SSD   M+  F ALE R+S LES  
Sbjct: 1  MLRTRLLWFTLGFSVTGGSIAHIVWRDLYAERFAISSD---MKEKFSALEGRVSGLESGG 60

Query: 61 NRNSIPS 68
            N  P+
Sbjct: 61 YENPNPA 64

The following BLAST results are available for this feature:
BLAST of Tan0000710 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0000710 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44712.19.2e-2662.79hypothetical protein Csa_016169 [Cucumis sativus][more]
KAG7014563.13.3e-2364.15hypothetical protein SDJN02_24741, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022992002.14.3e-2388.41uncharacterized protein LOC111488481 isoform X1 [Cucurbita maxima][more]
XP_022953273.14.3e-2388.41uncharacterized protein LOC111455871 isoform X1 [Cucurbita moschata][more]
XP_022992003.14.3e-2388.41uncharacterized protein LOC111488481 isoform X2 [Cucurbita maxima][more]
BLAST of Tan0000710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8L34.5e-2662.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374540 PE=4 SV=1[more]
A0A6J1JXU92.1e-2388.41uncharacterized protein LOC111488481 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JNH52.1e-2388.41uncharacterized protein LOC111488481 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1GP632.1e-2388.41uncharacterized protein LOC111455871 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1GMY62.1e-2388.41uncharacterized protein LOC111455871 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of Tan0000710 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G07568.18.1e-1253.73unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 39..59
NoneNo IPR availablePANTHERPTHR34970ABC TRANSPORTER A FAMILY PROTEINcoord: 1..63
NoneNo IPR availablePANTHERPTHR34970:SF5SUBFAMILY NOT NAMEDcoord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0000710.1Tan0000710.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane