Tan0000710 (gene) Snake gourd v1

Overview


Name	Tan0000710
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Fanconi anemia group D2 protein
Location	LG06: 11075599 .. 11079207 (-)
RNA-Seq Expression	Tan0000710
Synteny	Tan0000710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGAACTCGATTGTTCTGGTTCAGTGTTGGATTTGGGGCAACAGCCGCTTCCATTTCTCAATTCGTCTGGAGAGATCTATTGGCCTACCGATGTGCTCTTTCCTCTGATGCAAGTTTTGTTTTCCCTGAATTTTTTCTTCTTTTTTCCTTTCAAGAAGTTTTTCAGATCGTTATTTTTTTATGCTTTTGATTCTTTTTTTTATCCCGTTGTTTCAGATGGAGCGGAATTTCGACGCACTGGAAGCTAGAATCTCGAATCTCGAGTCTGTTCGAAACCGGAATTCGATTCCATCCGCTGAGGTATTTCTCTTCTTTGGTTACTGATGGAGCTTGAACTACATGCAGAGCTATTGTTTTATACGTGCTATGTGTGTGTATCTTATTCATTAGCTAATCGTCTTTACATGGGCCAATTATTCCTCGACTTTCGGCTGAACTTACTACATTTGGTTGCCAAGCTTAGAATATTAAGTCTTTTAAGTAGGTGGCTGCTATGGTTTGAACTCATTTCCTCTCTTATGACTATTAGGCCAATCACAGTGGTTCAATTATTAAAAATAATCGGCCAAGGGTATTCCATTTTAGTAATGTAATTAGTTTCATGAATGTAAATGGAAGTGGGGCATTTCTTGATGCCTGTAAAAACTTGCATTACTGCAAACATAATTTACTGTCTTTCAACATTGGACAGAGATAGGGATCATTGAATCTCTATTTTTCTCTGCTTTGTTCTTATAATGTATCGGCTCTTGCTTTGGTAGATTGTTAATGCTTTTCATGGGGGATATTCAAATTTTCTTATTTTCAGAAGGATTTTAGATAGTTTGAATAGCCGATTAAAGCATAAATGTAGAGGTAAAACAGATCACTAAATCATTGAGGCAAGGTTCCTTTATTTCCATCTAATCCTTTTTAAGCTATTGAGACCCCTGCCCTAGGATTGCTGAAGGGCTTACGTTTACTATTGTTCATTATTGTATTAATGAACGGTTCTTTTAAAGAATCCAGCCAGATTTGGCTCAAAGTGGTTTCCAGCTTATGAGGGTGAAAGAAGGATGGATGGTTCACTGTGCAATAAAAGGGGGAAACGACTGTAATTGTAGTTGGAATATTTCAAAGCTAGAGGCTCGTGTTAGAGCATTAAGGATCCAACTTTGGCGATGGAGAGATGATTTTTATTTTGTGAATATGAATATGCTTGGCCAAATTCTCATTCATTTGGAGTGAAATGTCAGAATTTTCATGCTGTGTCGGTACTTAAGACGAAGATTATTTTCTAGAATAAGCACTCTAGGAGTTGGAATATTGTGACTAGAAGAAATTTAATAGATGATGAATTCTATGAGCTTATTGAGCTATTAAAGTTCCTAAAAGAAAGACAAACATTGGGGCTGGAAATGATGAGATATTTAGAGAATAGGGTATTTACACATTTTGGTTAATTGAAGGGCACTATGAGAATACTATTGTAGCTTAATTGAAGGGCACTTTGGAATGTTAAAAATCTATAAGTGAATGGCAATGCTTGTTTATGCTTTATGGGTATGTTCAGAGAGTCAAGAGTCAAGACAATGGATGATTATGTGTCGGATTGCAAGATTTGTTGCAGAAGAAGTACTTAGCCATGTCACTAGCTAACCTACTGCAGCCACTCCCAATTTCAGAGCTACCTTTTGGGATGATATTTTTTAGGAAAAATTAGAGAGGAATTACTTCTTTGGGATGATATTACAATATATTTTATTCAGGATCTACTGAGATTGGAGGGGAAAGATGTGATTGTAGTTCTGTTGTCGTTTCTAATGTAATCCTTGAGGGGATTATCAAGCTGTAAGGGGTCCCAAAGTCTATAGTACTAGATGTCTAGACAGAAAACCTCTGTGAGCACCTTTTGGCTGACATTTAAATAGATTGAAACCTTAAGCGTAGTCAACACATCACCTTGGGCTTGGACAATCTGAGGTGGTTAATAGTTACCTGGAAACATACTTGCATTGCTTTGCTTTTGAAGGACCAAAAACTTGGGAAAAGCGAGTGTTACGGTTATCCAAAAAAATAAAAATAAAAAATAACAATGGCATAACACTTCATATCATATTTCAACGAAACAACCCCTTTTAGTTGATGTACGACAGACCCCATCCTCATTCAATACAAACAACCTTTCTCCCCAATTTCTTCAGTTGATTAGTTATTGTAGGAAGGGATGCTGCCCTTAGATGGCCTGAAATTCCAACTCTTCAGGACAAAGAAAATCATGAAAGGGAATGCAAACGCGAAATGGATGTTTAGGGCCTCTTTGTTGGGTGAGATATAATAATTTGGGTCATATAACTCCATGGACTATTACAAACTATTATAACCCACTTAGCGTCCTAAACAGTCTCTTAGTTTGTAGGTTGGGACATGGTCTATTTGAAGTTGCGACCCTATTGTCTGACATACATTAACAGGACAGAGCAATGAGAATTTGTCTCGTAAAATTATGGCCCATTTCAGGTGTTGGAAAGTGGCTTAAGAGCAATGAGAATTTGTCTCGTAATATTATGGCCCATTTCAGGTGTAAATAATCAAGTTTTTTCTGATTTCATCGTGAAAACTGAATTTTACTTTTGGGCTATTAAATGCTCAATTTTTTATGAATTTTACTTTTGTGATATATTATAAAGCATACCCCGTATATATTCTCCCTCTTTATTCTTCTTTTTACAAAGAGAACACATCGGTCGTATTCATTCTTGCTAATATCTTTAGACTCACTTCCATAAAGTTCGAGACAGACTCTGTCTTTCCTTTCCTCACAGCATTTCCTCGTTCCTTGTAACAGGCCAATGACTGAATAATTGATTCTCTGTGGAGCTCGTTATTTAGGTAAGATTTGGCTTGATTTATTATTTAAATTCTTAAACAGTTCAATAATATGGTTGACGGTCATATTTTATGGCAGCAATAATGAGCTTGTCTTGCATCCTGAATAGATGGTCGACTGTGAAATGAATCTTACGTTCTCTTTGATTATGAAAGTAAACTTTTGATAGATTTGATGGTTCTTTTATCAATATATTGACTCGGGGAGTATAAGAACCAGCGTTTTTGAGGCGCAGTTGTAAAAAAATGCTAAGCAAGGTTGCCTCGTGAAATTAAGAACACTCTTCAAAAATACTTATTTACATTTTTCTATTATGCGCCCGAAAAAAAAAAAAAATCTCCAGTGTTGGTGGCTACCCTAAAAGGGCTATTGTGTTTAGTTGCCTCCATTTAAAGAAACACTTATCCGAAGATTTACTTCCCAATTCCAGCCCTCTAATTTTCTGAGTTCATGATTTATCCATATGTCATTTATCATCTACATGCCCTTCAATTTGGTTTCTAGCTATCACCTACCATGATGATGAACATTTGTTCAGTAGGATTATGGGAGATGTAGGGAATAAAAACTCAGTTTTTGCCTAAAAACTTACATTTTTGTATTTTGCCTTTTCTCTTACCTGTATCATCACCTCACCCACACAGGAGGGAAGCAATCTCATCTCATGAATGTCTTGTAGATGGAATTTTGTATCAACAGTTGTGCAGGTGTAACTCCTTTTCTTGCTTTCCCTGA

mRNA sequence

ATGTTGAGAACTCGATTGTTCTGGTTCAGTGTTGGATTTGGGGCAACAGCCGCTTCCATTTCTCAATTCGTCTGGAGAGATCTATTGGCCTACCGATGTGCTCTTTCCTCTGATGCAAGTTTTATGGAGCGGAATTTCGACGCACTGGAAGCTAGAATCTCGAATCTCGAGTCTGTTCGAAACCGGAATTCGATTCCATCCGCTGAGGTATTTCTCTTCTTTGCTATTGTTTTATACGTGCTATGTGTGTGGCCTCTTTGTTGGTTTTTGCCTAAAAACTTACATTTTTGTATTTTGCCTTTTCTCTTACCTGTATCATCACCTCACCCACACAGGAGGGAAGCAATCTCATCTCATGAATGTCTTGTAGATGGAATTTTGTATCAACAGTTGTGCAGGTGTAACTCCTTTTCTTGCTTTCCCTGA

Coding sequence (CDS)

ATGTTGAGAACTCGATTGTTCTGGTTCAGTGTTGGATTTGGGGCAACAGCCGCTTCCATTTCTCAATTCGTCTGGAGAGATCTATTGGCCTACCGATGTGCTCTTTCCTCTGATGCAAGTTTTATGGAGCGGAATTTCGACGCACTGGAAGCTAGAATCTCGAATCTCGAGTCTGTTCGAAACCGGAATTCGATTCCATCCGCTGAGGTATTTCTCTTCTTTGCTATTGTTTTATACGTGCTATGTGTGTGGCCTCTTTGTTGGTTTTTGCCTAAAAACTTACATTTTTGTATTTTGCCTTTTCTCTTACCTGTATCATCACCTCACCCACACAGGAGGGAAGCAATCTCATCTCATGAATGTCTTGTAGATGGAATTTTGTATCAACAGTTGTGCAGGTGTAACTCCTTTTCTTGCTTTCCCTGA

Protein sequence

MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVRNRNSIPSAEVFLFFAIVLYVLCVWPLCWFLPKNLHFCILPFLLPVSSPHPHRREAISSHECLVDGILYQQLCRCNSFSCFP

Homology

[Close]

BLAST of Tan0000710 vs. NCBI nr
Match: KGN44712.1 (hypothetical protein Csa_016169 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 9.2e-26
Identity = 81/129 (62.79%), Postives = 86/129 (66.67%), Query Frame = 0


Query: 1   MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
           MLRTRLFWFS+GF  TAASIS FVWRDLLAYRCALSSDASFMER+FDALEARISNLES R
Sbjct: 1   MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCALSSDASFMERSFDALEARISNLESAR 60

Query: 61  NRNSIPSAE----------VFLFFAIVLYVLCVWPL--CWFLPKNLHFCILPFLLPVSSP 118
           NRNS+ SAE          V    A VL VLC WP+  CW+           F L     
Sbjct: 61  NRNSVSSAEGATVDKNHVNVLGSVAYVL-VLCRWPMTDCWWSSL--------FSL----- 114

[Close]

BLAST of Tan0000710 vs. NCBI nr
Match: KAG7014563.1 (hypothetical protein SDJN02_24741, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.0 bits (297), Expect = 3.3e-23
Identity = 68/106 (64.15%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 1   MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASF------------------- 60
           MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSDASF                   
Sbjct: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSDASFVLILKFSCSFTFPGGFQIV 60

Query: 61  --------------MERNFDALEARISNLESVRNRNSIPSAEVFLF 74
                         +ERNFDALEARISNLESVRNR+SIPSAEVFLF
Sbjct: 61  VFDVVGCFFLSLIQIERNFDALEARISNLESVRNRDSIPSAEVFLF 106

[Close]

BLAST of Tan0000710 vs. NCBI nr
Match: XP_022992002.1 (uncharacterized protein LOC111488481 isoform X1 [Cucurbita maxima])

HSP 1 Score: 118.6 bits (296), Expect = 4.3e-23
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSD   +ERNFDALEARISNLESVR
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSIPSAE 70
          NR+SIPSAE
Sbjct: 61 NRDSIPSAE 66

[Close]

BLAST of Tan0000710 vs. NCBI nr
Match: XP_022953273.1 (uncharacterized protein LOC111455871 isoform X1 [Cucurbita moschata])

HSP 1 Score: 118.6 bits (296), Expect = 4.3e-23
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSD   +ERNFDALEARISNLESVR
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSIPSAE 70
          NR+SIPSAE
Sbjct: 61 NRDSIPSAE 66

[Close]

BLAST of Tan0000710 vs. NCBI nr
Match: XP_022992003.1 (uncharacterized protein LOC111488481 isoform X2 [Cucurbita maxima])

HSP 1 Score: 118.6 bits (296), Expect = 4.3e-23
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSD   +ERNFDALEARISNLESVR
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSIPSAE 70
          NR+SIPSAE
Sbjct: 61 NRDSIPSAE 66

[Close]

BLAST of Tan0000710 vs. ExPASy TrEMBL
Match: A0A0A0K8L3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374540 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.5e-26
Identity = 81/129 (62.79%), Postives = 86/129 (66.67%), Query Frame = 0


Query: 1   MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
           MLRTRLFWFS+GF  TAASIS FVWRDLLAYRCALSSDASFMER+FDALEARISNLES R
Sbjct: 1   MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCALSSDASFMERSFDALEARISNLESAR 60

Query: 61  NRNSIPSAE----------VFLFFAIVLYVLCVWPL--CWFLPKNLHFCILPFLLPVSSP 118
           NRNS+ SAE          V    A VL VLC WP+  CW+           F L     
Sbjct: 61  NRNSVSSAEGATVDKNHVNVLGSVAYVL-VLCRWPMTDCWWSSL--------FSL----- 114

[Close]

BLAST of Tan0000710 vs. ExPASy TrEMBL
Match: A0A6J1JXU9 (uncharacterized protein LOC111488481 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488481 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSD   +ERNFDALEARISNLESVR
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSIPSAE 70
          NR+SIPSAE
Sbjct: 61 NRDSIPSAE 66

[Close]

BLAST of Tan0000710 vs. ExPASy TrEMBL
Match: A0A6J1JNH5 (uncharacterized protein LOC111488481 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488481 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSD   +ERNFDALEARISNLESVR
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSIPSAE 70
          NR+SIPSAE
Sbjct: 61 NRDSIPSAE 66

[Close]

BLAST of Tan0000710 vs. ExPASy TrEMBL
Match: A0A6J1GP63 (uncharacterized protein LOC111455871 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455871 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSD   +ERNFDALEARISNLESVR
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSIPSAE 70
          NR+SIPSAE
Sbjct: 61 NRDSIPSAE 66

[Close]

BLAST of Tan0000710 vs. ExPASy TrEMBL
Match: A0A6J1GMY6 (uncharacterized protein LOC111455871 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455871 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRLFWFSVGF AT+ASISQFVWRDLLA+RCALSSD   +ERNFDALEARISNLESVR
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSIPSAE 70
          NR+SIPSAE
Sbjct: 61 NRDSIPSAE 66

[Close]

BLAST of Tan0000710 vs. TAIR 10
Match: AT3G07568.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 8.1e-12
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1  MLRTRLFWFSVGFGATAASISQFVWRDLLAYRCALSSDASFMERNFDALEARISNLESVR 60
          MLRTRL WF++GF  T  SI+  VWRDL A R A+SSD   M+  F ALE R+S LES  
Sbjct: 1  MLRTRLLWFTLGFSVTGGSIAHIVWRDLYAERFAISSD---MKEKFSALEGRVSGLESGG 60

Query: 61 NRNSIPS 68
            N  P+
Sbjct: 61 YENPNPA 64

The following BLAST results are available for this feature:

BLAST of Tan0000710 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0000710 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44712.1	9.2e-26	62.79	hypothetical protein Csa_016169 [Cucumis sativus]	[more]
KAG7014563.1	3.3e-23	64.15	hypothetical protein SDJN02_24741, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022992002.1	4.3e-23	88.41	uncharacterized protein LOC111488481 isoform X1 [Cucurbita maxima]	[more]
XP_022953273.1	4.3e-23	88.41	uncharacterized protein LOC111455871 isoform X1 [Cucurbita moschata]	[more]
XP_022992003.1	4.3e-23	88.41	uncharacterized protein LOC111488481 isoform X2 [Cucurbita maxima]	[more]

BLAST of Tan0000710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8L3	4.5e-26	62.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374540 PE=4 SV=1	[more]
A0A6J1JXU9	2.1e-23	88.41	uncharacterized protein LOC111488481 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JNH5	2.1e-23	88.41	uncharacterized protein LOC111488481 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GP63	2.1e-23	88.41	uncharacterized protein LOC111455871 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GMY6	2.1e-23	88.41	uncharacterized protein LOC111455871 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Tan0000710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07568.1	8.1e-12	53.73	unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..59
None	No IPR available	PANTHER	PTHR34970	ABC TRANSPORTER A FAMILY PROTEIN	coord: 1..63
None	No IPR available	PANTHER	PTHR34970:SF5	SUBFAMILY NOT NAMED	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000710.1	Tan0000710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane