Tan0000472 (gene) Snake gourd v1

Overview


Name	Tan0000472
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG05: 73276930 .. 73277395 (-)
RNA-Seq Expression	Tan0000472
Synteny	Tan0000472

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAATTGGGTCTCTTCTTTCAAACCCATCTAGAGAGAGAGAGGTTGTGAAAATGGCGAGACTGATCAGAGAAATTGGTAGTGTTAATGGAAGTTTTGGACTCGCCGGCGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCAACCATAATTTTCTCTTGCTCCGACGGCATGTCAAAAGAGAGGAATTCCACGGCGGACGTCGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGTGGCGCAGGATGTGGTGCTTGAAAAATAGAGGACCCTTTTTTTATATATAGATGAATTTCACCGGCAACAAATTATGTCTCGGATTTTATCTGAGAGAAACAGAGAGCCTGTTGGATACTGACATCATTTTTGTAACATTTAATTGTGATTTAGCAGGCTGAGTTTAGTGTTTTATAATTTTTTGAGACAAAAATGATTATATATCAATACGAG

mRNA sequence

CTCAATTGGGTCTCTTCTTTCAAACCCATCTAGAGAGAGAGAGGTTGTGAAAATGGCGAGACTGATCAGAGAAATTGGTAGTGTTAATGGAAGTTTTGGACTCGCCGGCGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCAACCATAATTTTCTCTTGCTCCGACGGCATGTCAAAAGAGAGGAATTCCACGGCGGACGTCGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGTGGCGCAGGATGTGGTGCTTGAAAAATAGAGGACCCTTTTTTTATATATAGATGAATTTCACCGGCAACAAATTATGTCTCGGATTTTATCTGAGAGAAACAGAGAGCCTGTTGGATACTGACATCATTTTTGTAACATTTAATTGTGATTTAGCAGGCTGAGTTTAGTGTTTTATAATTTTTTGAGACAAAAATGATTATATATCAATACGAG

Coding sequence (CDS)

ATGGCGAGACTGATCAGAGAAATTGGTAGTGTTAATGGAAGTTTTGGACTCGCCGGCGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCAACCATAATTTTCTCTTGCTCCGACGGCATGTCAAAAGAGAGGAATTCCACGGCGGACGTCGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGTGGCGCAGGATGTGGTGCTTGA

Protein sequence

MARLIREIGSVNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA

Homology

[Close]

BLAST of Tan0000472 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.3 bits (334), Expect = 8.7e-28
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  MARLIREIGSVNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMS-KERNSTADVELY 60
          MARL+RE GS NGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMS K+RNSTADVELY
Sbjct: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60

Query: 61 GGGCAAGCGAGCGA 74
          G GCAAGCGAGCGA
Sbjct: 61 GAGCAAGCGAGCGA 74

[Close]

BLAST of Tan0000472 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.4e-25
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1   MARLIREIGSVNGSFGLA-GDIYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELY 60
           MARL+REI S NGSFGLA G+ Y LFW ALFTLCIIST+IFSCSDGMSK+RNST DVELY
Sbjct: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88

Query: 61  GGGCAAGCGAGCGA 74
           GGGCAAGCGAGCGA
Sbjct: 89  GGGCAAGCGAGCGA 102

[Close]

BLAST of Tan0000472 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 6.4e-23
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1  MARLIREIGSVNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELYG 60
          MARLI EIGSV+GSFGL+GDI  LF AALFTLCIIS I FSCSDG+SKERNSTADVELYG
Sbjct: 1  MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELYG 60

Query: 61 GGCAAGCGA 70
          GGCAAGCGA
Sbjct: 61 GGCAAGCGA 69

[Close]

BLAST of Tan0000472 vs. NCBI nr
Match: XP_015882794.1 (uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 94.4 bits (233), Expect = 4.5e-16
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MARLIREIGSVNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELYG 60
          M RL R++ SV+GS G AG  +++ W AL  +CIIS IIFSC+DG+SKE+ STAD ELYG
Sbjct: 1  MVRLWRDLASVHGS-GSAG--FVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELYG 60

Query: 61 GGCAAGCGAGCGA 74
          GGCAAGCGAGCGA
Sbjct: 61 GGCAAGCGAGCGA 70

[Close]

BLAST of Tan0000472 vs. NCBI nr
Match: PON38946.1 (hypothetical protein PanWU01x14_308610 [Parasponia andersonii])

HSP 1 Score: 88.6 bits (218), Expect = 2.5e-14
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 1  MARLIREIGSVNGSFGL--AGDIYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVEL 60
          M RL RE   V+G  G   +G   + F   L TLCI+STIIFSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGAGCG 73
          YGGGCAAGCGAGCG
Sbjct: 61 YGGGCAAGCGAGCG 74

[Close]

BLAST of Tan0000472 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1  MARLIREIGSVNGSFGLA-GDIYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELY 60
          MARL+REI S NGSFGLA G+ Y LFW ALFTLCIIST+IFSCSDGMSK+RNST DVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCAAGCGAGCGA 74
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 74

[Close]

BLAST of Tan0000472 vs. ExPASy TrEMBL
Match: A0A6P3ZT85 (uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC107418606 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.2e-16
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MARLIREIGSVNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELYG 60
          M RL R++ SV+GS G AG  +++ W AL  +CIIS IIFSC+DG+SKE+ STAD ELYG
Sbjct: 1  MVRLWRDLASVHGS-GSAG--FVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELYG 60

Query: 61 GGCAAGCGAGCGA 74
          GGCAAGCGAGCGA
Sbjct: 61 GGCAAGCGAGCGA 70

[Close]

BLAST of Tan0000472 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1  MARLIREIGSVNGSFGLAGDIYLLFWAA-LFTLCIISTIIFSCSDGMSKERNSTADVELY 60
          M RL RE+ +V+G  G     +L+F    L TLCI+STIIFSC+DG+SKE+ S  D ELY
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 61 GGGCAAGCGAGCGA 74
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 74

[Close]

BLAST of Tan0000472 vs. ExPASy TrEMBL
Match: A0A803R004 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1  MARLIREIGSVNGSFGLAGDIYLLFWAA-LFTLCIISTIIFSCSDGMSKERNSTADVELY 60
          M RL RE+ +V+G  G     +L+F    L TLCI+STIIFSC+DG+SKE+ S  D ELY
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 61 GGGCAAGCGAGCGA 74
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 74

[Close]

BLAST of Tan0000472 vs. ExPASy TrEMBL
Match: A0A2P5AQX4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 1  MARLIREIGSVNGSFGL--AGDIYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVEL 60
          M RL RE   V+G  G   +G   + F   L TLCI+STIIFSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGAGCG 73
          YGGGCAAGCGAGCG
Sbjct: 61 YGGGCAAGCGAGCG 74

[Close]

BLAST of Tan0000472 vs. TAIR 10
Match: AT1G68238.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 2.6e-06
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 19 GDIYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCG 73
          G++ L  WAA+    +I+ +IFSCSD  SK   +    ++ G  CAAGCG GCG
Sbjct: 14 GEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHTND---DVNGSSCAAGCGGGCG 64

[Close]

BLAST of Tan0000472 vs. TAIR 10
Match: AT3G18250.1 (Putative membrane lipoprotein )

HSP 1 Score: 44.3 bits (103), Expect = 4.9e-05
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 18 AGDIYLLFWAALFTLCIISTIIFSCSDGMSKERNSTADVELYGGGC-AAGCGAGCG 73
          A  ++ + + A+   CI+S ++FSC+DG+S  R +T+     GGGC  AGCG GCG
Sbjct: 21 ASYLFHVVFLAVIGCCILSALLFSCADGVSDNR-ATSGTSTGGGGCGGAGCGGGCG 75

The following BLAST results are available for this feature:

BLAST of Tan0000472 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0000472 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584341.1	8.7e-28	91.89	hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652552.1	2.4e-25	85.14	hypothetical protein Csa_013579 [Cucumis sativus]	[more]
KAG6572949.1	6.4e-23	86.96	hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_015882794.1	4.5e-16	67.12	uncharacterized protein LOC107418606 [Ziziphus jujuba]	[more]
PON38946.1	2.5e-14	62.16	hypothetical protein PanWU01x14_308610 [Parasponia andersonii]	[more]

BLAST of Tan0000472 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQU7	1.1e-25	85.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1	[more]
A0A6P3ZT85	2.2e-16	67.12	uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC10741860...	[more]
A0A803R005	1.8e-15	62.16	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803R004	1.8e-15	62.16	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2P5AQX4	1.2e-14	62.16	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE...	[more]

BLAST of Tan0000472 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68238.1	2.6e-06	44.44	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G18250.1	4.9e-05	42.86	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37199	TRANSMEMBRANE PROTEIN	coord: 1..73
None	No IPR available	PANTHER	PTHR37199:SF2	MEMBRANE LIPOPROTEIN-RELATED	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000472.1	Tan0000472.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane