Tan0000180 (gene) Snake gourd v1

Overview


Name	Tan0000180
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gibberellin-regulated family protein
Location	LG01: 115844096 .. 115847359 (-)
RNA-Seq Expression	Tan0000180
Synteny	Tan0000180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGGAGATGGCCATTTCTAAATCTCTTTTAACCTGTCTTTTCATGTCCTTTCTCCTAATTTATTTGGTTGGAGCTCATGAAATAATGGTAAATCCTCATTTCTGTGTTATGTTTTTGCTTTGCTTTTTAATTGTAATATTAATAATAATACAACTGACGGACCAATATATGAGTTTGAGTTGCAGGTAAACTCAATGGATGGTATTGCCGTTGACTCTGCTAAGATTCAAAACATTGGTAAAATACTTTCTCTTCTCCCTTTTTATTTTTTTTCTTCTCGGTATTTCAACACTCGTTTGATAACGTTTCCATTTCTTGTTTTCGTTTATCATTTTTCAAGAAACAAACTTATTTGATAAACATTCATATTCCTTATTTTTAAAAATGGGACAAATTTTGAGAAACTGTAAATTAGAATTTCTTTGTTTCATTTCTACATATATGATTTTGATTTTGTTCCACTTAATAATTATAATAGTTCTTCAGCCCAGTGGTATCCTGCTTTTATGTTCTTCATCCCTACCCGTTTGAGCTCTGACAATTTTTTTTTTAAAAATTCAATGATTTATCAAATTTTCAATAGATATATTCAAATATTATTTTAATTTTTAATACTCAATTTTGAAATATGCATATTTATATAAATAATTTTAATTTTAAGTTTTAAGTTTTTATCCATATATTATTTTAAATATAAATTTTGCAAAATATATATTATTTTAATTTTTAATACACTTGTAACCCATTAAAATTTTACAATATATAAATTTTGTTCATTAAAACATATTTTTGTCTCAATTTAATATTTTACTTCCATAACATTTACATAACAATATAATTGAGTACATAATTTAAGGGAAATGACTCAAGTGAGAGATAACAATACACATTAAATTTAGGCAATATTTAAAAGATAGAAATAATTTTATTATTTTGCATCCGAACTTATTTGTATTAGATGATGTAAACTTTTGATAATTATTTTTTTATATATTTGAATTAGATAATGTGAACTTTTAATAATTATTTTTTATATATATGTTTAATGCGAGTTATATATATTTTCATATTATATAATTGAATCCTATTTAAATTATAAATTAGAAAAGAATAAGAAAGAAAAACAGTTATTAAACAAATTTCTAGAAAAGGGTTATCAAACAATAACATTATCAAGCAAATAATAACATTAAAAAATCAAGAAAAAAAATAAAAAACAAGAAACATCAAATAATAACATTATCAAGCAGGGTTCAGTGGTCTGGCCTGTTATAACCTTTTTGTTTCTTTTTTTTTTTCTCATTTATGGTTTTTTGTTTTCTTGTTTTTCTTTTTTTAATAAAGAAAAATGAGACAACAACTATTTTTTTAAAAAATTTAAATAAATACGTAACATGCTTTAGAATACTTTATTATTTCTTGTTTTCTAAAATTTTAAATGGAAAATGTAAAAGTTTTATAGAAAAATATTTTTTGGATTAAATATTCAAGAACTTTAGATATTTTTTTTACATATTTTATAAGTATAACAATGATATTTATGTTTTAAAAAAATGGATACGAAAATAAAAACAAGAAATAGAAAACACGGACAAATCTCCTATATAAACACATGTTTTTGACAAACTTTTTGTGTAATTATTGCTCATTTATAAGAGATGATTCTAAAATTTGTATGAGAAGGCATAAAAATTTTGATTTTTTCCCTTCTTTTTCTAGCTTTTTAAAATTATAAAACGTATGTGTATACATTATTTTATTTTATTTTTACTAATAAAATATATGAAAAATATAATATAAAACTTTTTGAATATATATATTTAAAATAATTAATTTTCATGTAAAATTTTAGTTCCTTAATTTTAAATTTATGAGAATAAGAAAGAAAAATATTAATCCAAAAAATTGTTTTTAATTAAAAATAGAACAAAGAAGGAAAAAAAGCAATAATCAAATACACTTCAATTTTTTAAAGATAAAACTAAAAGTATTTGTATTTCAATAATATTATGAGATTATTGAATATCTTTATTTATATGCCAAGCCACGAATCTTAATATAGGAGATATTATTTGGATCTCTCATAAAAGTTAGAAACATTTTTTAGTATTTGAAACAGAAATTAGAAAAAATAAAAAACATTATCAAACTAGATTTTATTAGTGGTCAAAATCAAACATTTGTAGTGTTTAACAGATTGTGGAGGAGCTTGTGCGGGGAGGTGCAAATTATCTTCAAGACCGAACCTATGCAAGAGGGCATGCGGCACGTGCTGTGCACGTTGCAGCTGCGTTCCGCCGGGCACTTCGGGCAACTACGAAACCTGCCCTTGCTACGCCCGCATGACCACTCACGGCGGCCGCCGAAAGTGTCCCTAAATCATCATTAAATTCTACCAGCTTGATTAATAATCAATTAAGAGTTTGAAAAAATAAATTAATGTAAAATAAGAATAACTGATATCTGGGAAAACTAGATTCTTCTCTCTCTGTCTCTTTGTTTGGTGTTGTTGCCCCTGTTTTTGATTCAATTTTCAGCCTTGAAGATTTTGATTCTTCACGTAACTTTGAAAAGAGAAGTTTGCTGCAATCTAGCTAGTAAAATATTTCAAATCTGTTACTAAAGGTGCTATTAAAAAGCTGAATATAATTCAACATAATTGACGTACACTTCTTCTTTTGAAGTTGGAGGTTCGAATCTTTCTATACCTTATGTTCGTTGTACTAAAAAAAACTTATGAAAAAAGAGAAATAATTATGAACAACAAAGTAAGTTCACTTTCTGATTTATATATTGGAAATGAATATGCTTTCAGATGTATGTGGTCGGCAAATTGTGATTGGGAAAGACAGCGTGCATCGGACCAACCACGTATTCTGGCTATAATTAACTTTTGTACAAAGGAAAAATTCTTAAAGGAAAACAACAAATAAAGATAAAGAGTTAATTATGAAATGTTGTAGTAGTGCTTGTCAAACATCCTCCAATAATTGAGTAAAGAAGGTTTTAGATAACTCAACCTTAACAATTTCCCCTCACTGATAGGCAAAAGATTAACCAAAATTATGAGTTGTGTATGAATGAAGTGGGGATTAGTTGGCTTCAATTTCGAATGTTTCAAGTACAATATATGAGTCATGGGAAGGATGAGTTTTCGAACATTTAGAAGCGCATTTGAGACTTAATCAAAAGCAGAAATTTGAAAGCAAGGGATTCAATGAAAGCAGAGTTGTATTTCATGTTTTCGGATATGTGTTTAGTAG

mRNA sequence

CTTGGAGATGGCCATTTCTAAATCTCTTTTAACCTGTCTTTTCATGTCCTTTCTCCTAATTTATTTGGTTGGAGCTCATGAAATAATGGTAAACTCAATGGATGGTATTGCCGTTGACTCTGCTAAGATTCAAAACATTGATTGTGGAGGAGCTTGTGCGGGGAGGTGCAAATTATCTTCAAGACCGAACCTATGCAAGAGGGCATGCGGCACGTGCTGTGCACGTTGCAGCTGCGTTCCGCCGGGCACTTCGGGCAACTACGAAACCTGCCCTTGCTACGCCCGCATGACCACTCACGGCGGCCGCCGAAAGTGTCCCTAAATCATCATTAAATTCTACCAGCTTGATTAATAATCAATTAAGAGTTTGAAAAAATAAATTAATGTAAAATAAGAATAACTGATATCTGGGAAAACTAGATTCTTCTCTCTCTGTCTCTTTGTTTGGTGTTGTTGCCCCTGTTTTTGATTCAATTTTCAGCCTTGAAGATTTTGATTCTTCACGTAACTTTGAAAAGAGAAGTTTGCTGCAATCTAGCTAGTAAAATATTTCAAATCTGTTACTAAAGGTGCTATTAAAAAGCTGAATATAATTCAACATAATTGACGTACACTTCTTCTTTTGAAGTTGGAGGTTCGAATCTTTCTATACCTTATGTTCGTTGTACTAAAAAAAACTTATGAAAAAAGAGAAATAATTATGAACAACAAAGTAAGTTCACTTTCTGATTTATATATTGGAAATGAATATGCTTTCAGATGTATGTGGTCGGCAAATTGTGATTGGGAAAGACAGCGTGCATCGGACCAACCACGTATTCTGGCTATAATTAACTTTTGTACAAAGGAAAAATTCTTAAAGGAAAACAACAAATAAAGATAAAGAGTTAATTATGAAATGTTGTAGTAGTGCTTGTCAAACATCCTCCAATAATTGAGTAAAGAAGGTTTTAGATAACTCAACCTTAACAATTTCCCCTCACTGATAGGCAAAAGATTAACCAAAATTATGAGTTGTGTATGAATGAAGTGGGGATTAGTTGGCTTCAATTTCGAATGTTTCAAGTACAATATATGAGTCATGGGAAGGATGAGTTTTCGAACATTTAGAAGCGCATTTGAGACTTAATCAAAAGCAGAAATTTGAAAGCAAGGGATTCAATGAAAGCAGAGTTGTATTTCATGTTTTCGGATATGTGTTTAGTAG

Coding sequence (CDS)

ATGGCCATTTCTAAATCTCTTTTAACCTGTCTTTTCATGTCCTTTCTCCTAATTTATTTGGTTGGAGCTCATGAAATAATGGTAAACTCAATGGATGGTATTGCCGTTGACTCTGCTAAGATTCAAAACATTGATTGTGGAGGAGCTTGTGCGGGGAGGTGCAAATTATCTTCAAGACCGAACCTATGCAAGAGGGCATGCGGCACGTGCTGTGCACGTTGCAGCTGCGTTCCGCCGGGCACTTCGGGCAACTACGAAACCTGCCCTTGCTACGCCCGCATGACCACTCACGGCGGCCGCCGAAAGTGTCCCTAA

Protein sequence

MAISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRPNLCKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP

Homology

[Close]

BLAST of Tan0000180 vs. ExPASy Swiss-Prot
Match: Q93X17 (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-29
Identity = 63/104 (60.58%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 1   MAISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRP 60
           MAISK+L   L +S LL+  V + +    + + I+  +   + IDCGGACA RC+LSSRP
Sbjct: 1   MAISKALFASLLLSLLLLEQVQSIQTDQVTSNAISEAAYSYKKIDCGGACAARCRLSSRP 60

Query: 61  NLCKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
            LC RACGTCCARC+CVPPGTSGN ETCPCYA +TTHG +RKCP
Sbjct: 61  RLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

[Close]

BLAST of Tan0000180 vs. ExPASy Swiss-Prot
Match: P46689 (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 2.4e-26
Identity = 60/104 (57.69%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 1   MAISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRP 60
           MAISK+L+  L +S L++ LV A        +G A      + IDCG AC  RC+LS RP
Sbjct: 1   MAISKALIASLLISLLVLQLVQADVENSQKKNGYA------KKIDCGSACVARCRLSRRP 60

Query: 61  NLCKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
            LC RACGTCC RC+CVPPGT GNY+ C CYA +TTHGGRRKCP
Sbjct: 61  RLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Tan0000180 vs. ExPASy Swiss-Prot
Match: F4IQJ4 (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.6e-25
Identity = 60/104 (57.69%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 1   MAISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRP 60
           MA+ + LL  L +S L++  V  H  MV S D           IDC   C  RC LSSRP
Sbjct: 1   MAVFRVLLASLLISLLVLDFV--HADMVTSNDA--------PKIDCNSRCQERCSLSSRP 60

Query: 61  NLCKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
           NLC RACGTCCARC+CV PGTSGNY+ CPCY  +TTHGGRRKCP
Sbjct: 61  NLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Tan0000180 vs. ExPASy Swiss-Prot
Match: P46688 (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.3e-23
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 1   MAISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRP 60
           MA+ +S L  L    L+I  +  +E+ V++ DG  V    ++ IDCGG C  RC  SSR 
Sbjct: 1   MAVFRSTLVLL----LIIVCLTTYELHVHAADGAKVGEGVVK-IDCGGRCKDRCSKSSRT 60

Query: 61  NLCKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
            LC RAC +CC+RC+CVPPGTSGN   CPCYA +TTHGGR KCP
Sbjct: 61  KLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]

BLAST of Tan0000180 vs. ExPASy Swiss-Prot
Match: P46687 (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.5e-23
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 1   MAISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRP 60
           MAI +S L  L    L+++ +   E+ V++ +   V    ++ IDCGG C GRC  SSRP
Sbjct: 1   MAIFRSTLVLL----LILFCLTTFELHVHAAEDSQVGEGVVK-IDCGGRCKGRCSKSSRP 60

Query: 61  NLCKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
           NLC RAC +CC RC+CVPPGT+GN+  CPCYA +TT GGR KCP
Sbjct: 61  NLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]

BLAST of Tan0000180 vs. NCBI nr
Match: XP_023525231.1 (snakin-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.1 bits (414), Expect = 6.5e-37
Identity = 77/102 (75.49%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 3   ISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRPNL 62
           +SK+LLTC+ MS L+++LVGA +  VNS+ G+A   A IQ+IDCGGACA RCKLSSRP+L
Sbjct: 6   LSKALLTCVLMSLLVVHLVGADD-KVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHL 65

Query: 63  CKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
           CKRACGTCCARC+CVPPGTSG YETCPCYA MTTHGGRRKCP
Sbjct: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of Tan0000180 vs. NCBI nr
Match: XP_022982305.1 (gibberellin-regulated protein 1-like [Cucurbita maxima])

HSP 1 Score: 162.9 bits (411), Expect = 1.5e-36
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 3   ISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRPNL 62
           +SK+L+TC+ MS L+++LVGA E  VNS+ G+A   A +Q+IDCGGACA RCKLSSRP+L
Sbjct: 6   LSKALVTCVLMSLLVVHLVGADE-KVNSIHGVAAHPANMQSIDCGGACASRCKLSSRPHL 65

Query: 63  CKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
           CKRACGTCCARC+CVPPGTSG YETCPCYA MTTHGGRRKCP
Sbjct: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of Tan0000180 vs. NCBI nr
Match: XP_022940222.1 (gibberellin-regulated protein 1-like [Cucurbita moschata])

HSP 1 Score: 162.2 bits (409), Expect = 2.5e-36
Identity = 76/102 (74.51%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 3   ISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRPNL 62
           +SK+L+TC+ MS L+++LV A E  VNS+ G+A   A IQ+IDCGGACA RCKLSSRPNL
Sbjct: 6   LSKALVTCVLMSLLVVHLVAADE-EVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPNL 65

Query: 63  CKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
           CKRACGTCCARC+CVPPGTSG YETCPCYA +TTHGGRRKCP
Sbjct: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of Tan0000180 vs. NCBI nr
Match: KAG6608594.1 (Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037911.1 Snakin-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.8 bits (408), Expect = 3.2e-36
Identity = 76/102 (74.51%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 3   ISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRPNL 62
           +SK+LLTC+ MS L+++LV A E  VNS+ G+A   A IQ+IDCGGACA RCKLSSRP+L
Sbjct: 6   LSKALLTCVLMSLLVVHLVAADE-KVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHL 65

Query: 63  CKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
           CKRACGTCCARC+CVPPGTSG YETCPCYA +TTHGGRRKCP
Sbjct: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of Tan0000180 vs. NCBI nr
Match: XP_038899682.1 (gibberellin-regulated protein 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 159.1 bits (401), Expect = 2.1e-35
Identity = 77/105 (73.33%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 1   MAISKSLLTC-LFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSR 60
           M ISK L+   LF+S  L++ +     MVNS+DG+A ++AKIQNIDCGGACA RCKLSSR
Sbjct: 1   MVISKPLIIAYLFISSFLVHTLVEANKMVNSIDGVATNTAKIQNIDCGGACASRCKLSSR 60

Query: 61  PNLCKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
           PNLCKRACGTCCARCSCVPPGTSG Y+ CPCYA MTTHGGRRKCP
Sbjct: 61  PNLCKRACGTCCARCSCVPPGTSGGYDACPCYASMTTHGGRRKCP 105

[Close]

BLAST of Tan0000180 vs. ExPASy TrEMBL
Match: A0A6J1J2A8 (gibberellin-regulated protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481179 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 7.1e-37
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 3   ISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRPNL 62
           +SK+L+TC+ MS L+++LVGA E  VNS+ G+A   A +Q+IDCGGACA RCKLSSRP+L
Sbjct: 6   LSKALVTCVLMSLLVVHLVGADE-KVNSIHGVAAHPANMQSIDCGGACASRCKLSSRPHL 65

Query: 63  CKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
           CKRACGTCCARC+CVPPGTSG YETCPCYA MTTHGGRRKCP
Sbjct: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of Tan0000180 vs. ExPASy TrEMBL
Match: A0A6J1FJ01 (gibberellin-regulated protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111445908 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36
Identity = 76/102 (74.51%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 3   ISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRPNL 62
           +SK+L+TC+ MS L+++LV A E  VNS+ G+A   A IQ+IDCGGACA RCKLSSRPNL
Sbjct: 6   LSKALVTCVLMSLLVVHLVAADE-EVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPNL 65

Query: 63  CKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
           CKRACGTCCARC+CVPPGTSG YETCPCYA +TTHGGRRKCP
Sbjct: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of Tan0000180 vs. ExPASy TrEMBL
Match: A0A6J1CCE1 (gibberellin-regulated protein 11-like OS=Momordica charantia OX=3673 GN=LOC111010205 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 73/102 (71.57%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 3   ISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRPNL 62
           +SK L+TC+FMS L++  VGAHE     ++G   D  KIQNIDCGGACA RCKLSSRPNL
Sbjct: 6   LSKPLITCVFMSLLVLCFVGAHE----KVNGTTADPTKIQNIDCGGACAMRCKLSSRPNL 65

Query: 63  CKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
           CKRACGTCCARCSCVPPGTSG Y+ CPCYA +TT GGR KCP
Sbjct: 66  CKRACGTCCARCSCVPPGTSGGYDACPCYAHITTRGGRPKCP 103

[Close]

BLAST of Tan0000180 vs. ExPASy TrEMBL
Match: A0A0A0LDK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872170 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.7e-30
Identity = 72/105 (68.57%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MAISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDS-AKIQNIDCGGACAGRCKLSSR 60
           MA+ K ++  L  S L++  V A + MV    G+A  S  K QNIDCGGACA RCKLSSR
Sbjct: 1   MALPKIIVCLLASSLLVLCFVEADDQMV---VGVAASSPTKTQNIDCGGACASRCKLSSR 60

Query: 61  PNLCKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
           PNLC RACGTCCARCSCVPPGTSGNYE CPCYA +TTHGGRRKCP
Sbjct: 61  PNLCHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102

[Close]

BLAST of Tan0000180 vs. ExPASy TrEMBL
Match: A0A5D3E7E4 (Gibberellin-regulated protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008070 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.9e-30
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MAISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRP 60
           MAI K +   + MS L++  V A +++V    G+A      QNI+CGGACA RCKLSSRP
Sbjct: 1   MAIPKIIPCLVAMSLLVLCFVEADDMVV----GVAASPTLTQNINCGGACASRCKLSSRP 60

Query: 61  NLCKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
           NLCKRACGTCCARCSCVPPGTSGNY  CPCYA++TTHGGRRKCP
Sbjct: 61  NLCKRACGTCCARCSCVPPGTSGNYGACPCYAKLTTHGGRRKCP 100

[Close]

BLAST of Tan0000180 vs. TAIR 10
Match: AT1G75750.2 (GAST1 protein homolog 1 )

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-27
Identity = 61/104 (58.65%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 1   MAISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRP 60
           MAISK+L+  L +S L++ LV A E   NS       +   + IDCG AC  RC+LS RP
Sbjct: 1   MAISKALIASLLISLLVLQLVQADE---NSQK----KNGYAKKIDCGSACVARCRLSRRP 60

Query: 61  NLCKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
            LC RACGTCC RC+CVPPGT GNY+ C CYA +TTHGGRRKCP
Sbjct: 61  RLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 97

[Close]

BLAST of Tan0000180 vs. TAIR 10
Match: AT1G75750.1 (GAST1 protein homolog 1 )

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-27
Identity = 60/104 (57.69%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 1   MAISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRP 60
           MAISK+L+  L +S L++ LV A        +G A      + IDCG AC  RC+LS RP
Sbjct: 1   MAISKALIASLLISLLVLQLVQADVENSQKKNGYA------KKIDCGSACVARCRLSRRP 60

Query: 61  NLCKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
            LC RACGTCC RC+CVPPGT GNY+ C CYA +TTHGGRRKCP
Sbjct: 61  RLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Tan0000180 vs. TAIR 10
Match: AT2G18420.1 (Gibberellin-regulated family protein )

HSP 1 Score: 115.2 bits (287), Expect = 3.2e-26
Identity = 60/104 (57.69%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 1   MAISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRP 60
           MA+ + LL  L +S L++  V  H  MV S D           IDC   C  RC LSSRP
Sbjct: 1   MAVFRVLLASLLISLLVLDFV--HADMVTSNDA--------PKIDCNSRCQERCSLSSRP 60

Query: 61  NLCKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
           NLC RACGTCCARC+CV PGTSGNY+ CPCY  +TTHGGRRKCP
Sbjct: 61  NLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Tan0000180 vs. TAIR 10
Match: AT4G09610.1 (GAST1 protein homolog 2 )

HSP 1 Score: 107.8 bits (268), Expect = 5.2e-24
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 1   MAISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRP 60
           MA+ +S L  L    L+I  +  +E+ V++ DG  V    ++ IDCGG C  RC  SSR 
Sbjct: 1   MAVFRSTLVLL----LIIVCLTTYELHVHAADGAKVGEGVVK-IDCGGRCKDRCSKSSRT 60

Query: 61  NLCKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
            LC RAC +CC+RC+CVPPGTSGN   CPCYA +TTHGGR KCP
Sbjct: 61  KLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]

BLAST of Tan0000180 vs. TAIR 10
Match: AT4G09600.1 (GAST1 protein homolog 3 )

HSP 1 Score: 107.5 bits (267), Expect = 6.8e-24
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 1   MAISKSLLTCLFMSFLLIYLVGAHEIMVNSMDGIAVDSAKIQNIDCGGACAGRCKLSSRP 60
           MAI +S L  L    L+++ +   E+ V++ +   V    ++ IDCGG C GRC  SSRP
Sbjct: 1   MAIFRSTLVLL----LILFCLTTFELHVHAAEDSQVGEGVVK-IDCGGRCKGRCSKSSRP 60

Query: 61  NLCKRACGTCCARCSCVPPGTSGNYETCPCYARMTTHGGRRKCP 105
           NLC RAC +CC RC+CVPPGT+GN+  CPCYA +TT GGR KCP
Sbjct: 61  NLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

The following BLAST results are available for this feature:

BLAST of Tan0000180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93X17	1.8e-29	60.58	Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1	[more]
P46689	2.4e-26	57.69	Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV...	[more]
F4IQJ4	4.6e-25	57.69	Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 ...	[more]
P46688	7.3e-23	52.88	Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV...	[more]
P46687	9.5e-23	51.92	Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV...	[more]

BLAST of Tan0000180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525231.1	6.5e-37	75.49	snakin-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022982305.1	1.5e-36	74.51	gibberellin-regulated protein 1-like [Cucurbita maxima]	[more]
XP_022940222.1	2.5e-36	74.51	gibberellin-regulated protein 1-like [Cucurbita moschata]	[more]
KAG6608594.1	3.2e-36	74.51	Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037911.1 Snakin-2...	[more]
XP_038899682.1	2.1e-35	73.33	gibberellin-regulated protein 1-like isoform X1 [Benincasa hispida]	[more]

BLAST of Tan0000180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J2A8	7.1e-37	74.51	gibberellin-regulated protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481179...	[more]
A0A6J1FJ01	1.2e-36	74.51	gibberellin-regulated protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114459...	[more]
A0A6J1CCE1	1.9e-34	71.57	gibberellin-regulated protein 11-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A0A0LDK8	3.7e-30	68.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872170 PE=3 SV=1	[more]
A0A5D3E7E4	4.9e-30	66.35	Gibberellin-regulated protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Tan0000180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75750.2	1.0e-27	58.65	GAST1 protein homolog 1	[more]
AT1G75750.1	1.7e-27	57.69	GAST1 protein homolog 1	[more]
AT2G18420.1	3.2e-26	57.69	Gibberellin-regulated family protein	[more]
AT4G09610.1	5.2e-24	52.88	GAST1 protein homolog 2	[more]
AT4G09600.1	6.8e-24	51.92	GAST1 protein homolog 3	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 15..74 e-value: 6.3E-22 score: 77.5
None	No IPR available	PANTHER	PTHR23201:SF67	SNAKIN-2-LIKE	coord: 9..74
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 9..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000180.1	Tan0000180.1	mRNA
Tan0000180.2	Tan0000180.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
cellular_component	GO:0005576	extracellular region