Tan0000071 (gene) Snake gourd v1

Overview


Name	Tan0000071
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	proline-rich protein HaeIII subfamily 1-like
Location	LG03: 60572004 .. 60572537 (-)
RNA-Seq Expression	Tan0000071
Synteny	Tan0000071

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAATAAATTCAGAGATTTAAAATTGATTAGGAGCCAAATGCTATATAAAGGAAGCATTGGAACAAGGGAAAACACAGCAAAAATGGCCTCAATGAGTTCTAAAATGCTTTTAGGAGCTTTGGCTCTTATTTTCTTAGGGTTTCATTTTACCACAAACCCAACACATGCTAGAAAACTTGCTGAGAAGGAATCAAGGTTTAACTTTGTGATGTATCCCGAAAGAGTACCTATTCCCCCGTCGGGGCCAAATCAAAGACATTCATTTGCTCCTCCACCACCTTCCTTTACTATTTCGAAGAATGAACCCGAGTTCAATTTTGGGATGTACCCAAAAGGTGTACCTATTCCTCCTTCTGGCCCGAGTCAAAGGACATCAGATTCATCTCCTCCTCCACTCCATTCATTGGATCAATTCGATTTCGGAATGTATCCCAAAGGCGTGCCTATTCCTCCTTCTGGACCGAGTCAAAGGACATCTGACGATCTTCACCTCCTCCACCACATTCCATTTATCAAGCTTCGAGAATGA

mRNA sequence

ATGGCTAATAAATTCAGAGATTTAAAATTGATTAGGAGCCAAATGCTATATAAAGGAAGCATTGGAACAAGGGAAAACACAGCAAAAATGGCCTCAATGAGTTCTAAAATGCTTTTAGGAGCTTTGGCTCTTATTTTCTTAGGGTTTCATTTTACCACAAACCCAACACATGCTAGAAAACTTGCTGAGAAGGAATCAAGGTTTAACTTTGTGATGTATCCCGAAAGAGTACCTATTCCCCCGTCGGGGCCAAATCAAAGACATTCATTTGCTCCTCCACCACCTTCCTTTACTATTTCGAAGAATGAACCCGAGTTCAATTTTGGGATGTACCCAAAAGGTGTACCTATTCCTCCTTCTGGCCCGAGTCAAAGGACATCAGATTCATCTCCTCCTCCACTCCATTCATTGGATCAATTCGATTTCGGAATGTATCCCAAAGGCGTGCCTATTCCTCCTTCTGGACCGAGTCAAAGGACATCTGACGATCTTCACCTCCTCCACCACATTCCATTTATCAAGCTTCGAGAATGA

Coding sequence (CDS)

ATGGCTAATAAATTCAGAGATTTAAAATTGATTAGGAGCCAAATGCTATATAAAGGAAGCATTGGAACAAGGGAAAACACAGCAAAAATGGCCTCAATGAGTTCTAAAATGCTTTTAGGAGCTTTGGCTCTTATTTTCTTAGGGTTTCATTTTACCACAAACCCAACACATGCTAGAAAACTTGCTGAGAAGGAATCAAGGTTTAACTTTGTGATGTATCCCGAAAGAGTACCTATTCCCCCGTCGGGGCCAAATCAAAGACATTCATTTGCTCCTCCACCACCTTCCTTTACTATTTCGAAGAATGAACCCGAGTTCAATTTTGGGATGTACCCAAAAGGTGTACCTATTCCTCCTTCTGGCCCGAGTCAAAGGACATCAGATTCATCTCCTCCTCCACTCCATTCATTGGATCAATTCGATTTCGGAATGTATCCCAAAGGCGTGCCTATTCCTCCTTCTGGACCGAGTCAAAGGACATCTGACGATCTTCACCTCCTCCACCACATTCCATTTATCAAGCTTCGAGAATGA

Protein sequence

MANKFRDLKLIRSQMLYKGSIGTRENTAKMASMSSKMLLGALALIFLGFHFTTNPTHARKLAEKESRFNFVMYPERVPIPPSGPNQRHSFAPPPPSFTISKNEPEFNFGMYPKGVPIPPSGPSQRTSDSSPPPLHSLDQFDFGMYPKGVPIPPSGPSQRTSDDLHLLHHIPFIKLRE

Homology

[Close]

BLAST of Tan0000071 vs. NCBI nr
Match: KAG6603169.1 (hypothetical protein SDJN03_03778, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-28
Identity = 75/127 (59.06%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 55  PTHARK-LAEKESRFNFVMYPERVPIPPSGPNQRHSFAPPPP---SFTISKNEPEFNFGM 114
           P HA   +   +S+ NF M P+ VPIPPSGP+QR S  PPPP   S  I   + + NFGM
Sbjct: 230 PPHASSFILNTQSKINFGMLPKGVPIPPSGPSQRTSDYPPPPPHASSVILNTQSKINFGM 289

Query: 115 YPKGVPIPPSGPSQRTSDSSPPPLHSL-DQFDFGMYPKGVPIPPSGPSQRTSDDLHLLHH 174
            PKGVPIPPSGPSQRTS+  PPP H L  + +FGM PKGVPIPPSGPS+RTSD      H
Sbjct: 290 LPKGVPIPPSGPSQRTSNYPPPPPHVLRPKINFGMLPKGVPIPPSGPSRRTSDHPPPAPH 349

Query: 175 IPFIKLR 177
            PFI LR
Sbjct: 350 TPFITLR 356

[Close]

BLAST of Tan0000071 vs. NCBI nr
Match: XP_022967687.1 (actin cytoskeleton-regulatory complex protein PAN1-like [Cucurbita maxima])

HSP 1 Score: 128.3 bits (321), Expect = 6.8e-26
Identity = 71/124 (57.26%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 55  PTHARK-LAEKESRFNFVMYPERVPIPPSGPNQRHSFAPPPPSFTISKNEPEFNFGMYPK 114
           P HA   +  K+S+ NF M P+ VPIPPSGP+ R S  PPPP   +    P+ NFGM PK
Sbjct: 389 PPHASSVILNKQSKINFGMLPKGVPIPPSGPSHRTSDYPPPPPHVL---WPKINFGMLPK 448

Query: 115 GVPIPPSGPSQRTSDSSPPPLHSL-DQFDFGMYPKGVPIPPSGPSQRTSDDLHLLHHIPF 174
            VPIPPSGPSQRTSD  PPP H L  + +FGM PKGVPIPP GPS+RTSD      + P 
Sbjct: 449 DVPIPPSGPSQRTSDYPPPPPHVLWPKINFGMLPKGVPIPPHGPSRRTSDYPPPAPNTPS 508

Query: 175 IKLR 177
           I LR
Sbjct: 509 ITLR 509

[Close]

BLAST of Tan0000071 vs. NCBI nr
Match: XP_008442275.1 (PREDICTED: proline-rich protein HaeIII subfamily 1-like [Cucumis melo] >KAA0041826.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK05348.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-23
Identity = 72/146 (49.32%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 30  MASMSSKMLLGALALIFLGFHFTTNPTHARKLAEK-------------ESRFNFVMYPER 89
           MAS S  M+LG   L+ LGFH     THAR +                 S F F MYP+ 
Sbjct: 1   MASKSWIMMLGGWLLVLLGFHLIAVQTHARPIPPSGSNPTTSDPPPPPPSNFIFKMYPKG 60

Query: 90  VPIPPSGPNQRHSFAPPPPSFTISKNEPEFNFGMYPKGVPIPPSGPSQRTSDSSPPPLHS 149
           + +PPSGP+QR S + PPP F I +N  +F+FGMYPKG+ +PPSGPSQRTSDSSPPP  +
Sbjct: 61  I-VPPSGPSQRTSDSSPPPPFNILQN--KFDFGMYPKGI-VPPSGPSQRTSDSSPPPPSN 120

Query: 150 LDQFDFGMYPKGVPIPPSGPSQRTSD 163
             +  FG     VP+PPSGP+  TSD
Sbjct: 121 FFEERFGR----VPVPPSGPNPTTSD 138

[Close]

BLAST of Tan0000071 vs. NCBI nr
Match: XP_011654399.2 (proline-rich protein HaeIII subfamily 1-like [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-23
Identity = 71/141 (50.35%), Postives = 87/141 (61.70%), Query Frame = 0


Query: 37  MLLGALALIFLGFHFTTNPTHARKL-------------AEKESRFNFVMYPERVPIPPSG 96
           M+LGA  L+ LGFH     THAR +                 S   F +Y + + IPPSG
Sbjct: 1   MILGASFLVLLGFHLIAVQTHARPIPPTGSNPTTSDPTPPPPSNSIFKVYSKGI-IPPSG 60

Query: 97  PNQRHSFAPPPPSFTISKNEPEFNFGMYPKGVPIPPSGPSQRTSDSSPPPLHSL---DQF 156
           P+QR S + PPP F I   + +F+FGMYPKG+PIPPSGPSQRTSDSSPPP  +    + F
Sbjct: 61  PSQRTSDSSPPPPFNIL--QKKFDFGMYPKGIPIPPSGPSQRTSDSSPPPPSNFFHHNTF 120

Query: 157 DFGMYPKGVPIPPSGPSQRTS 162
            FGMY + VPIPPSG + RTS
Sbjct: 121 GFGMYQRRVPIPPSGLNPRTS 138

[Close]

BLAST of Tan0000071 vs. NCBI nr
Match: EOY16631.1 (Uncharacterized protein TCM_035454 [Theobroma cacao])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-21
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 38  LLGALALIFLGFHFTTNPTHARKLAEKESRFNFVMYPERVPIPPSGPNQRHSFAPPPPSF 97
           +L  +AL+FLG  + +   +AR + E  S+ NF ++P+ VPIPPSGP++R S +PPPP  
Sbjct: 7   MLLMVALVFLG--YVSMSGNARAVPE-ASQLNFGVFPKGVPIPPSGPSRRTSASPPPP-- 66

Query: 98  TISKNEPEFNFGMYPKGVPIPPSGPSQRTSDSSPPPLHSLDQFDFGMYPKGVPIPPSGPS 157
                    NFGM+PKGVPIPPSGPS+RTS +SPPP       +FG +PKGVPIPPSGPS
Sbjct: 67  ---PPIRLLNFGMFPKGVPIPPSGPSRRTS-ASPPPPPPTGLLNFGTFPKGVPIPPSGPS 121

Query: 158 QRTS 162
           + TS
Sbjct: 127 RGTS 121

[Close]

BLAST of Tan0000071 vs. ExPASy TrEMBL
Match: A0A6J1HRH7 (actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3661 GN=LOC111467141 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.3e-26
Identity = 71/124 (57.26%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 55  PTHARK-LAEKESRFNFVMYPERVPIPPSGPNQRHSFAPPPPSFTISKNEPEFNFGMYPK 114
           P HA   +  K+S+ NF M P+ VPIPPSGP+ R S  PPPP   +    P+ NFGM PK
Sbjct: 389 PPHASSVILNKQSKINFGMLPKGVPIPPSGPSHRTSDYPPPPPHVL---WPKINFGMLPK 448

Query: 115 GVPIPPSGPSQRTSDSSPPPLHSL-DQFDFGMYPKGVPIPPSGPSQRTSDDLHLLHHIPF 174
            VPIPPSGPSQRTSD  PPP H L  + +FGM PKGVPIPP GPS+RTSD      + P 
Sbjct: 449 DVPIPPSGPSQRTSDYPPPPPHVLWPKINFGMLPKGVPIPPHGPSRRTSDYPPPAPNTPS 508

Query: 175 IKLR 177
           I LR
Sbjct: 509 ITLR 509

[Close]

BLAST of Tan0000071 vs. ExPASy TrEMBL
Match: A0A5D3C2C7 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00150 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.8e-24
Identity = 72/146 (49.32%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 30  MASMSSKMLLGALALIFLGFHFTTNPTHARKLAEK-------------ESRFNFVMYPER 89
           MAS S  M+LG   L+ LGFH     THAR +                 S F F MYP+ 
Sbjct: 1   MASKSWIMMLGGWLLVLLGFHLIAVQTHARPIPPSGSNPTTSDPPPPPPSNFIFKMYPKG 60

Query: 90  VPIPPSGPNQRHSFAPPPPSFTISKNEPEFNFGMYPKGVPIPPSGPSQRTSDSSPPPLHS 149
           + +PPSGP+QR S + PPP F I +N  +F+FGMYPKG+ +PPSGPSQRTSDSSPPP  +
Sbjct: 61  I-VPPSGPSQRTSDSSPPPPFNILQN--KFDFGMYPKGI-VPPSGPSQRTSDSSPPPPSN 120

Query: 150 LDQFDFGMYPKGVPIPPSGPSQRTSD 163
             +  FG     VP+PPSGP+  TSD
Sbjct: 121 FFEERFGR----VPVPPSGPNPTTSD 138

[Close]

BLAST of Tan0000071 vs. ExPASy TrEMBL
Match: A0A1S3B4V4 (proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo OX=3656 GN=LOC103486183 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.8e-24
Identity = 72/146 (49.32%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 30  MASMSSKMLLGALALIFLGFHFTTNPTHARKLAEK-------------ESRFNFVMYPER 89
           MAS S  M+LG   L+ LGFH     THAR +                 S F F MYP+ 
Sbjct: 1   MASKSWIMMLGGWLLVLLGFHLIAVQTHARPIPPSGSNPTTSDPPPPPPSNFIFKMYPKG 60

Query: 90  VPIPPSGPNQRHSFAPPPPSFTISKNEPEFNFGMYPKGVPIPPSGPSQRTSDSSPPPLHS 149
           + +PPSGP+QR S + PPP F I +N  +F+FGMYPKG+ +PPSGPSQRTSDSSPPP  +
Sbjct: 61  I-VPPSGPSQRTSDSSPPPPFNILQN--KFDFGMYPKGI-VPPSGPSQRTSDSSPPPPSN 120

Query: 150 LDQFDFGMYPKGVPIPPSGPSQRTSD 163
             +  FG     VP+PPSGP+  TSD
Sbjct: 121 FFEERFGR----VPVPPSGPNPTTSD 138

[Close]

BLAST of Tan0000071 vs. ExPASy TrEMBL
Match: A0A061FHV4 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_035454 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.4e-22
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 38  LLGALALIFLGFHFTTNPTHARKLAEKESRFNFVMYPERVPIPPSGPNQRHSFAPPPPSF 97
           +L  +AL+FLG  + +   +AR + E  S+ NF ++P+ VPIPPSGP++R S +PPPP  
Sbjct: 7   MLLMVALVFLG--YVSMSGNARAVPE-ASQLNFGVFPKGVPIPPSGPSRRTSASPPPP-- 66

Query: 98  TISKNEPEFNFGMYPKGVPIPPSGPSQRTSDSSPPPLHSLDQFDFGMYPKGVPIPPSGPS 157
                    NFGM+PKGVPIPPSGPS+RTS +SPPP       +FG +PKGVPIPPSGPS
Sbjct: 67  ---PPIRLLNFGMFPKGVPIPPSGPSRRTS-ASPPPPPPTGLLNFGTFPKGVPIPPSGPS 121

Query: 158 QRTS 162
           + TS
Sbjct: 127 RGTS 121

[Close]

BLAST of Tan0000071 vs. ExPASy TrEMBL
Match: A0A1R3GMC3 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25007 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.1e-20
Identity = 70/135 (51.85%), Postives = 82/135 (60.74%), Query Frame = 0


Query: 30  MASMSSKMLLGALALIFLGFHFTTNPTHARKLAEKESRFNFVMYPERVPIPPSGPNQRHS 89
           MA+  S ML+  L L+F+G+  T    +AR L+ +    NF M P+ VPIPPSGP+ R S
Sbjct: 1   MANKLSMMLM--LVLVFVGYSATL--INARSLSSQ--LLNFEMLPKGVPIPPSGPSTRTS 60

Query: 90  FAPPPPSFTISKNEPEFNFGMYPKGVPIPPSGPSQRTSDSSPPPLHSLDQFDFGMYPKGV 149
              PPP        P  NF M PKGVPIPPSGPS RTS   PPP       +F M PKGV
Sbjct: 61  ADVPPP--------PSLNFQMLPKGVPIPPSGPSTRTSADVPPP----PSLNFQMLPKGV 117

Query: 150 PIPPSGPSQRTSDDL 165
           PIPPSGPS RTS D+
Sbjct: 121 PIPPSGPSTRTSADV 117

The following BLAST results are available for this feature:

BLAST of Tan0000071 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0000071 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603169.1	1.1e-28	59.06	hypothetical protein SDJN03_03778, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022967687.1	6.8e-26	57.26	actin cytoskeleton-regulatory complex protein PAN1-like [Cucurbita maxima]	[more]
XP_008442275.1	1.4e-23	49.32	PREDICTED: proline-rich protein HaeIII subfamily 1-like [Cucumis melo] >KAA00418...	[more]
XP_011654399.2	1.8e-23	50.35	proline-rich protein HaeIII subfamily 1-like [Cucumis sativus]	[more]
EOY16631.1	1.3e-21	53.23	Uncharacterized protein TCM_035454 [Theobroma cacao]	[more]

BLAST of Tan0000071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HRH7	3.3e-26	57.26	actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3...	[more]
A0A5D3C2C7	6.8e-24	49.32	Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3B4V4	6.8e-24	49.32	proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A061FHV4	6.4e-22	53.23	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_035454 PE=4 SV=1	[more]
A0A1R3GMC3	2.1e-20	51.85	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25007 PE=4 ...	[more]

BLAST of Tan0000071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..163
None	No IPR available	PANTHER	PTHR33599:SF13	FORMIN-LIKE PROTEIN 20	coord: 106..162
None	No IPR available	PANTHER	PTHR33599:SF13	FORMIN-LIKE PROTEIN 20	coord: 65..132
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 106..162
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 65..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000071.1	Tan0000071.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission
cellular_component	GO:0110165	cellular anatomical entity