Spg040060 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg040060
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	nuclear pore complex protein NUP160
Location	scaffold10: 25041680 .. 25043728 (-)
RNA-Seq Expression	Spg040060
Synteny	Spg040060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTAAAACCCCGAAGTAGGGTTCTAGCTTTGTTCAAATTCACCAGAGCGAACACTGTGCTGCAGAGTGCAGACCGGTGGATGAATCCGACAAGAAGGGAGAATATGGGGCGTAGGGTGCCACTGGCCGGAATGGAGACCTCTATAATGGCCACCGACGCTGTAGAATTCATTGATGTTTCTCTTCCTTCTTCCTCATTCAGAGATGGCGCCATTACTTCCGTTGCTTCACAAGCTAGCTCTTCATTGACTGAGGACCATGCCTCCTGCGCTGTCGTTGGAGATCCTCCAACCTATCTCATCTGGTATGCTCCCTCTTCTCCTCTCAGTTTATTGATTGCGTTTTTCGGTGCCAACAAGCCCAATTGCTCTTCCATTTCTTCTTACCCAACAGGAGGATTCGGAAGACTCTACCTCGTGTGGTCGAGTTGCTTGAGTTTTCAACTGCCAACGAATTTCGTAGGATTGGTCTCCGAATTGCTTTTCCGGATGCACTTCACCCAGCCGTGTTTGTTTGCAAAAATGAGGTTAGTTTCTATTTTCATAATCGGAATTTTCAGCCTGTTGGAATGTTTCAATGTATTATTAATTTCTGTGGAACACTGCAGATTAGTTCGTCTACGGTATATCCTTTCTTGATGTACGCAGTGACTTCGTCCGCGGTCGCTTACTGTTTGAAGCTGAGAAATGTTTCCTCATACATATCCTGCTCAGTCATCCCTCTTGATGAGGTTGTGGAGTTTAATTTGCAAACCCATCCAAACAACAAACCAGTAACCAGCGTATTTGCTGTATCTGGATGCCTCGTGATTGGGAGAAGTGATGGATCAGTTTCATGTTACAAACTTGGGTCGCTTGACCAACATACCCCTGGTATGAATTTACTTTTCAGTCCTCCAGTGGTTACATTATCTAAATATCTTGTAATTTGTCCAAATATGATTGAAAAAATGGGCGATTGGCTTACTTCCATACTAATAAGAAGCTTCTTTATGACCCAGAACAGATAGTTGTTGGCTTAAAACTATAGGATGTTTTTTCTTTGTCAATGGCGAAATACCTTCTTGTATTGCCATTTCACAATTGTTTTATTATTTTTTTTGCTGTTTATGCCGTGCCACAGGATGTAAATGTGAACTTACAACTATCTGCAATTGATTCTATTTCTTTATTTTTTGTGTTGCGCAGTTCTATAGAATATTTGAAACTTGTACTATTATGTTACATTTATGCATTGTCTCTAACAATTTAGTATTTATTTTACTTCTAGGCTTTGAACATGAACTACGGGATGATTCAGGATTCAATCGTCTGTTGGGTTTCATTTCAAGGTGCCCATATATGAAATATCGTATTATACAGATGTGCATCGTACTTCAAAATTTTGCTTGCTTTTGTTTCTGATTTAAATGATTGGCATTGAGGTTGAGGTTGTCCATTTTCTTGTGAACAAGAAATGAAACTTTTCATTGATGAAATGAAAATAGAATAATGCTCAAGAAATTCAAAACTCCATGGGGGTGAAAAAGCTGAAAACAGAAAGTAAAGTAATAGACAGCACAAAGTTACAGAAAAACTTCCCAATTGTTGCAAATAGTTTGAAAAGAGGTTGTCAGTTACATGCACATATTTGAACATTCATTTATGAAGAAATTTTATAGAAATTATAAAAAAAAAATGAAGAAACTTTATAGAAGGATTATAGTTAATCTTAATTAGTATTACTAAGGTTGTCAGTAGAGATTGGCAGAGCAGTTCACATCCGTTTGAAGTTGGCATTGGCAAGCGAAGTTATTTTTGGAGTGCAGGATGTTTCTTCCTTCAAGAATGGATTTCCTATTCTATTCAGCATTGTGTTGCCTCCTAATGGTTCTGTTTTTTACTATTGGGTTGCTGTTTGTGGGTCTTGGAAAATATTTTCCAGAAATTTTTATTTTTAAAACAAGAAACAAAGTTTTAGGGAATTCTAAAGGAGGTGGAATTCAAAATTTGAGGATTTCTGAAGACCAGTTCTTATCTTGGAGGGAGCCTGTCGTTTTGTTCAAGCTTAA

mRNA sequence

ATGAATCCGACAAGAAGGGAGAATATGGGGCGTAGGGTGCCACTGGCCGGAATGGAGACCTCTATAATGGCCACCGACGCTGTAGAATTCATTGATGTTTCTCTTCCTTCTTCCTCATTCAGAGATGGCGCCATTACTTCCGTTGCTTCACAAGCTAGCTCTTCATTGACTGAGGACCATGCCTCCTGCGCTGTCGTTGGAGATCCTCCAACCTATCTCATCTGGAGGATTCGGAAGACTCTACCTCGTGTGGTCGAGTTGCTTGAGTTTTCAACTGCCAACGAATTTCGTAGGATTGGTCTCCGAATTGCTTTTCCGGATGCACTTCACCCAGCCGTGTTTGTTTGCAAAAATGAGATTAGTTCGTCTACGGTATATCCTTTCTTGATGTACGCAGTGACTTCGTCCGCGGTCGCTTACTGTTTGAAGCTGAGAAATGTTTCCTCATACATATCCTGCTCAGTCATCCCTCTTGATGAGGTTGTGGAGTTTAATTTGCAAACCCATCCAAACAACAAACCAGTAACCAGCGTATTTGCTGTATCTGGATGCCTCGTGATTGGGAGAAGTGATGGATCAGTTTCATGTTACAAACTTGGGTCGCTTGACCAACATACCCCTGGCTTTGAACATGAACTACGGGATGATTCAGGATTCAATCGTCTGTTGGGTTTCATTTCAAGAGCAGTTCACATCCGTTTGAAGTTGGCATTGGCAAGCGAAGTTATTTTTGGAGTGCAGGATGTTTCTTCCTTCAAGAATGGATTTCCTATTCTATTCAGCATTGTGTTGCCTCCTAATGGTTCTGTTTTTTACTATTGGGTTGCTGTTTCCTGTCGTTTTGTTCAAGCTTAA

Coding sequence (CDS)

ATGAATCCGACAAGAAGGGAGAATATGGGGCGTAGGGTGCCACTGGCCGGAATGGAGACCTCTATAATGGCCACCGACGCTGTAGAATTCATTGATGTTTCTCTTCCTTCTTCCTCATTCAGAGATGGCGCCATTACTTCCGTTGCTTCACAAGCTAGCTCTTCATTGACTGAGGACCATGCCTCCTGCGCTGTCGTTGGAGATCCTCCAACCTATCTCATCTGGAGGATTCGGAAGACTCTACCTCGTGTGGTCGAGTTGCTTGAGTTTTCAACTGCCAACGAATTTCGTAGGATTGGTCTCCGAATTGCTTTTCCGGATGCACTTCACCCAGCCGTGTTTGTTTGCAAAAATGAGATTAGTTCGTCTACGGTATATCCTTTCTTGATGTACGCAGTGACTTCGTCCGCGGTCGCTTACTGTTTGAAGCTGAGAAATGTTTCCTCATACATATCCTGCTCAGTCATCCCTCTTGATGAGGTTGTGGAGTTTAATTTGCAAACCCATCCAAACAACAAACCAGTAACCAGCGTATTTGCTGTATCTGGATGCCTCGTGATTGGGAGAAGTGATGGATCAGTTTCATGTTACAAACTTGGGTCGCTTGACCAACATACCCCTGGCTTTGAACATGAACTACGGGATGATTCAGGATTCAATCGTCTGTTGGGTTTCATTTCAAGAGCAGTTCACATCCGTTTGAAGTTGGCATTGGCAAGCGAAGTTATTTTTGGAGTGCAGGATGTTTCTTCCTTCAAGAATGGATTTCCTATTCTATTCAGCATTGTGTTGCCTCCTAATGGTTCTGTTTTTTACTATTGGGTTGCTGTTTCCTGTCGTTTTGTTCAAGCTTAA

Protein sequence

MNPTRRENMGRRVPLAGMETSIMATDAVEFIDVSLPSSSFRDGAITSVASQASSSLTEDHASCAVVGDPPTYLIWRIRKTLPRVVELLEFSTANEFRRIGLRIAFPDALHPAVFVCKNEISSSTVYPFLMYAVTSSAVAYCLKLRNVSSYISCSVIPLDEVVEFNLQTHPNNKPVTSVFAVSGCLVIGRSDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISRAVHIRLKLALASEVIFGVQDVSSFKNGFPILFSIVLPPNGSVFYYWVAVSCRFVQA

Homology

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BLAST of Spg040060 vs. NCBI nr
Match: XP_023550112.1 (nuclear pore complex protein NUP160 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 400.2 bits (1027), Expect = 1.5e-107
Identity = 199/228 (87.28%), Postives = 211/228 (92.54%), Query Frame = 0


Query: 1   MNPTRRENMGRRVPLAGMETSIMATDAVEFIDVSLPSSSFRDGAITSVASQASSSLTEDH 60
           M PTR ENMGRRVPLAGMETSIMATDAVEFIDVS+PSSS RDGAITSVA  A +S TEDH
Sbjct: 1   MKPTRTENMGRRVPLAGMETSIMATDAVEFIDVSVPSSSLRDGAITSVAPPACTSFTEDH 60

Query: 61  ASCAVVGDPPTYLIWRIRKTLPRVVELLEFSTANEFRRIGLRIAFPDALHPAVFVCKNEI 120
           ASCAVVGDPPTYLIWRIRK  P VVELL+FSTANEFRRIGLRIAFP+ LHPAVFVC NEI
Sbjct: 61  ASCAVVGDPPTYLIWRIRKIRPHVVELLQFSTANEFRRIGLRIAFPETLHPAVFVCTNEI 120

Query: 121 SSSTVYPFLMYAVTSSAVAYCLKLRNVSSYISCSVIPLDEVVEFNLQTHPNNKPVTSVFA 180
           SSST +PFLMYAVTSS +AYCLKLRNVSSYISCSVIPLDEVVEFNL THP++KPVTSV A
Sbjct: 121 SSSTGHPFLMYAVTSSGIAYCLKLRNVSSYISCSVIPLDEVVEFNLHTHPDSKPVTSVSA 180

Query: 181 VSGCLVIGRSDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISR 229
           +SGCLVIGR DGSVSC+KLGSLDQH+PGF+HELRDDSGFNRLLGFISR
Sbjct: 181 ISGCLVIGRHDGSVSCFKLGSLDQHSPGFQHELRDDSGFNRLLGFISR 228

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BLAST of Spg040060 vs. NCBI nr
Match: XP_022969806.1 (nuclear pore complex protein NUP160 [Cucurbita maxima])

HSP 1 Score: 399.1 bits (1024), Expect = 3.3e-107
Identity = 197/228 (86.40%), Postives = 211/228 (92.54%), Query Frame = 0


Query: 1   MNPTRRENMGRRVPLAGMETSIMATDAVEFIDVSLPSSSFRDGAITSVASQASSSLTEDH 60
           M PTR ENMGRRVPLAGMETSIMATDAVEFIDVS+PSSS RDGAI S+A  A +S TEDH
Sbjct: 1   MKPTRTENMGRRVPLAGMETSIMATDAVEFIDVSVPSSSLRDGAIASIAPPACTSFTEDH 60

Query: 61  ASCAVVGDPPTYLIWRIRKTLPRVVELLEFSTANEFRRIGLRIAFPDALHPAVFVCKNEI 120
           ASCAVVGDPPTYLIWRIRK  P VVELL+FSTANEFRRIGLRIAFP+ LHPAVFVC NEI
Sbjct: 61  ASCAVVGDPPTYLIWRIRKIRPHVVELLQFSTANEFRRIGLRIAFPETLHPAVFVCNNEI 120

Query: 121 SSSTVYPFLMYAVTSSAVAYCLKLRNVSSYISCSVIPLDEVVEFNLQTHPNNKPVTSVFA 180
           SSST +PFLMYAVTSS +AYCLKLRNVSSYISCSVIPLDEVVEFNL THP++KPVTSV A
Sbjct: 121 SSSTGHPFLMYAVTSSGIAYCLKLRNVSSYISCSVIPLDEVVEFNLHTHPDSKPVTSVSA 180

Query: 181 VSGCLVIGRSDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISR 229
           +SGCLVIGR+DGSVSC+KLGSLDQH+PGF+HELRDDSGFNRLLGFISR
Sbjct: 181 ISGCLVIGRNDGSVSCFKLGSLDQHSPGFQHELRDDSGFNRLLGFISR 228

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BLAST of Spg040060 vs. NCBI nr
Match: KAG7017151.1 (Nuclear pore complex protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 392.5 bits (1007), Expect = 3.1e-105
Identity = 195/228 (85.53%), Postives = 209/228 (91.67%), Query Frame = 0


Query: 1   MNPTRRENMGRRVPLAGMETSIMATDAVEFIDVSLPSSSFRDGAITSVASQASSSLTEDH 60
           M PT  ENMGR VPLAGMETSIMATDAVEFIDVS+PSSS RDGAITSVA  A +S TEDH
Sbjct: 1   MKPTTTENMGRPVPLAGMETSIMATDAVEFIDVSVPSSSLRDGAITSVAPPACTSFTEDH 60

Query: 61  ASCAVVGDPPTYLIWRIRKTLPRVVELLEFSTANEFRRIGLRIAFPDALHPAVFVCKNEI 120
           ASCAVVGDPPTYLIWRIRK  P VVELL+FSTANEFRRIGLRIAFP+ LHPAVFVC NEI
Sbjct: 61  ASCAVVGDPPTYLIWRIRKIRPHVVELLQFSTANEFRRIGLRIAFPETLHPAVFVCNNEI 120

Query: 121 SSSTVYPFLMYAVTSSAVAYCLKLRNVSSYISCSVIPLDEVVEFNLQTHPNNKPVTSVFA 180
           SSST +PFLMYAVTSS +AYCLKLRNVSSYISCSVIPLDEVVEFNL THP++KPVTSV A
Sbjct: 121 SSSTGHPFLMYAVTSSGIAYCLKLRNVSSYISCSVIPLDEVVEFNLHTHPDSKPVTSVSA 180

Query: 181 VSGCLVIGRSDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISR 229
           +SGCLVIGR+DGSVSC+KLGSLD H+PGF+H+LRDDSGFNRLLGFISR
Sbjct: 181 ISGCLVIGRNDGSVSCFKLGSLDLHSPGFQHDLRDDSGFNRLLGFISR 228

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BLAST of Spg040060 vs. NCBI nr
Match: KAG6579709.1 (Nuclear pore complex protein 160, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 392.1 bits (1006), Expect = 4.0e-105
Identity = 195/228 (85.53%), Postives = 209/228 (91.67%), Query Frame = 0


Query: 1   MNPTRRENMGRRVPLAGMETSIMATDAVEFIDVSLPSSSFRDGAITSVASQASSSLTEDH 60
           M PT  ENMGR VPLAGMETSIMATDAVEFIDVS+PSSS RDGAITSVA  A +S TEDH
Sbjct: 1   MKPTTTENMGRPVPLAGMETSIMATDAVEFIDVSVPSSSLRDGAITSVAPPACTSFTEDH 60

Query: 61  ASCAVVGDPPTYLIWRIRKTLPRVVELLEFSTANEFRRIGLRIAFPDALHPAVFVCKNEI 120
           ASCAVVGDPPTYLIWRIRK  P VVELL+FSTANEFRRIGLRIAFP+ LHPAVFVC NEI
Sbjct: 61  ASCAVVGDPPTYLIWRIRKIRPHVVELLQFSTANEFRRIGLRIAFPETLHPAVFVCHNEI 120

Query: 121 SSSTVYPFLMYAVTSSAVAYCLKLRNVSSYISCSVIPLDEVVEFNLQTHPNNKPVTSVFA 180
           SSST +PFLMYAVTSS +AYCLKLRNVSSYISCSVIPLDEVVEFNL THP++KPVTSV A
Sbjct: 121 SSSTGHPFLMYAVTSSGIAYCLKLRNVSSYISCSVIPLDEVVEFNLHTHPDSKPVTSVSA 180

Query: 181 VSGCLVIGRSDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISR 229
           +SGCLVIGR+DGSVSC+KLGSLD H+PGF+H+LRDDSGFNRLLGFISR
Sbjct: 181 ISGCLVIGRNDGSVSCFKLGSLDLHSPGFQHDLRDDSGFNRLLGFISR 228

[Close]

BLAST of Spg040060 vs. NCBI nr
Match: XP_022928856.1 (nuclear pore complex protein NUP160 [Cucurbita moschata])

HSP 1 Score: 390.2 bits (1001), Expect = 1.5e-104
Identity = 196/228 (85.96%), Postives = 209/228 (91.67%), Query Frame = 0


Query: 1   MNPTRRENMGRRVPLAGMETSIMATDAVEFIDVSLPSSSFRDGAITSVASQASSSLTEDH 60
           M PTR ENMGRRVPL GMETSIMATDAVEF DVS+PSSS RDGAITSVA  A +S TEDH
Sbjct: 1   MKPTRTENMGRRVPLTGMETSIMATDAVEF-DVSVPSSSLRDGAITSVAPPACTSFTEDH 60

Query: 61  ASCAVVGDPPTYLIWRIRKTLPRVVELLEFSTANEFRRIGLRIAFPDALHPAVFVCKNEI 120
           ASCAVVGDPPTYLIWRIRK  P VVELL+FSTANEFRRIGLRIAFP+ LHPAVFVC NEI
Sbjct: 61  ASCAVVGDPPTYLIWRIRKIRPHVVELLQFSTANEFRRIGLRIAFPETLHPAVFVCTNEI 120

Query: 121 SSSTVYPFLMYAVTSSAVAYCLKLRNVSSYISCSVIPLDEVVEFNLQTHPNNKPVTSVFA 180
           SSST +PFLMYAVTSS +AYCLKLRNVSSYISCSVIPLDEVVEFNL TH ++KPVTSV A
Sbjct: 121 SSSTGHPFLMYAVTSSGIAYCLKLRNVSSYISCSVIPLDEVVEFNLHTHQDSKPVTSVSA 180

Query: 181 VSGCLVIGRSDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISR 229
           +SGCLVIGR+DGSVSC+KLGSLDQH+PGF+HELRDDSGFNRLLGFISR
Sbjct: 181 ISGCLVIGRNDGSVSCFKLGSLDQHSPGFQHELRDDSGFNRLLGFISR 227

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BLAST of Spg040060 vs. ExPASy Swiss-Prot
Match: Q9C811 (Nuclear pore complex protein NUP160 OS=Arabidopsis thaliana OX=3702 GN=NUP160 PE=1 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 2.1e-35
Identity = 87/217 (40.09%), Postives = 126/217 (58.06%), Query Frame = 0


Query: 11  RRVPLAGMETSIM-ATDAVEFIDVSLPSSSFRDGAITSVASQASS----SLTEDHASCAV 70
           RR P AGME  +    + V++I++S+PS S    +I + +S+ +      L+ED+AS +V
Sbjct: 5   RRNPSAGMEVPVAGGGNVVKWIEISVPSPSVSSSSIGANSSEDNECVQLPLSEDYASSSV 64

Query: 71  VGDPPTYLIWRIRKTLPRVVELLEFSTANEFRRIGLRIAFPDALHPAVFVCKNEISSSTV 130
           +G+P    +WRI KT P  +ELL+ S  + F   GLR  F   L P  FV  +E   S  
Sbjct: 65  IGEPSISFVWRINKTSPNALELLQLSAKSGFPITGLRFVFAQTLSPFAFVYADEGGDSGR 124

Query: 131 YPFLMYAVTSSAVAYCLKLRNVSSYISCSVIPLDEVVEFNLQTHPNNKPVTSVFAVSGCL 190
             + +Y++T S V Y LKL N  +Y S SV PLD ++  +++ + N   VTSV A  G +
Sbjct: 125 LVYFLYSLTPSGVVYVLKLSNTLAYKSGSVFPLDHLIHLDVRPYLNESRVTSVAASPGFI 184

Query: 191 VIGRSDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRL 223
            +GRSDG VSC++     Q + GF  ELRDD+GF RL
Sbjct: 185 FLGRSDGCVSCFQPIVYFQKSSGFHQELRDDTGFGRL 221

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BLAST of Spg040060 vs. ExPASy TrEMBL
Match: A0A6J1HYU1 (nuclear pore complex protein NUP160 OS=Cucurbita maxima OX=3661 GN=LOC111468896 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.6e-107
Identity = 197/228 (86.40%), Postives = 211/228 (92.54%), Query Frame = 0


Query: 1   MNPTRRENMGRRVPLAGMETSIMATDAVEFIDVSLPSSSFRDGAITSVASQASSSLTEDH 60
           M PTR ENMGRRVPLAGMETSIMATDAVEFIDVS+PSSS RDGAI S+A  A +S TEDH
Sbjct: 1   MKPTRTENMGRRVPLAGMETSIMATDAVEFIDVSVPSSSLRDGAIASIAPPACTSFTEDH 60

Query: 61  ASCAVVGDPPTYLIWRIRKTLPRVVELLEFSTANEFRRIGLRIAFPDALHPAVFVCKNEI 120
           ASCAVVGDPPTYLIWRIRK  P VVELL+FSTANEFRRIGLRIAFP+ LHPAVFVC NEI
Sbjct: 61  ASCAVVGDPPTYLIWRIRKIRPHVVELLQFSTANEFRRIGLRIAFPETLHPAVFVCNNEI 120

Query: 121 SSSTVYPFLMYAVTSSAVAYCLKLRNVSSYISCSVIPLDEVVEFNLQTHPNNKPVTSVFA 180
           SSST +PFLMYAVTSS +AYCLKLRNVSSYISCSVIPLDEVVEFNL THP++KPVTSV A
Sbjct: 121 SSSTGHPFLMYAVTSSGIAYCLKLRNVSSYISCSVIPLDEVVEFNLHTHPDSKPVTSVSA 180

Query: 181 VSGCLVIGRSDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISR 229
           +SGCLVIGR+DGSVSC+KLGSLDQH+PGF+HELRDDSGFNRLLGFISR
Sbjct: 181 ISGCLVIGRNDGSVSCFKLGSLDQHSPGFQHELRDDSGFNRLLGFISR 228

[Close]

BLAST of Spg040060 vs. ExPASy TrEMBL
Match: A0A6J1ELG7 (nuclear pore complex protein NUP160 OS=Cucurbita moschata OX=3662 GN=LOC111435647 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 7.4e-105
Identity = 196/228 (85.96%), Postives = 209/228 (91.67%), Query Frame = 0


Query: 1   MNPTRRENMGRRVPLAGMETSIMATDAVEFIDVSLPSSSFRDGAITSVASQASSSLTEDH 60
           M PTR ENMGRRVPL GMETSIMATDAVEF DVS+PSSS RDGAITSVA  A +S TEDH
Sbjct: 1   MKPTRTENMGRRVPLTGMETSIMATDAVEF-DVSVPSSSLRDGAITSVAPPACTSFTEDH 60

Query: 61  ASCAVVGDPPTYLIWRIRKTLPRVVELLEFSTANEFRRIGLRIAFPDALHPAVFVCKNEI 120
           ASCAVVGDPPTYLIWRIRK  P VVELL+FSTANEFRRIGLRIAFP+ LHPAVFVC NEI
Sbjct: 61  ASCAVVGDPPTYLIWRIRKIRPHVVELLQFSTANEFRRIGLRIAFPETLHPAVFVCTNEI 120

Query: 121 SSSTVYPFLMYAVTSSAVAYCLKLRNVSSYISCSVIPLDEVVEFNLQTHPNNKPVTSVFA 180
           SSST +PFLMYAVTSS +AYCLKLRNVSSYISCSVIPLDEVVEFNL TH ++KPVTSV A
Sbjct: 121 SSSTGHPFLMYAVTSSGIAYCLKLRNVSSYISCSVIPLDEVVEFNLHTHQDSKPVTSVSA 180

Query: 181 VSGCLVIGRSDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISR 229
           +SGCLVIGR+DGSVSC+KLGSLDQH+PGF+HELRDDSGFNRLLGFISR
Sbjct: 181 ISGCLVIGRNDGSVSCFKLGSLDQHSPGFQHELRDDSGFNRLLGFISR 227

[Close]

BLAST of Spg040060 vs. ExPASy TrEMBL
Match: A0A6J1DRY3 (nuclear pore complex protein NUP160 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022966 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.6e-102
Identity = 192/247 (77.73%), Postives = 213/247 (86.23%), Query Frame = 0


Query: 1   MNPTRRENMGRRVPLAGMETSIMATDAVEFIDVSLPSSSFRDGAITSVASQASSSLTEDH 60
           MNPTRRENMGRRVPLAGMETSIMAT AVEFIDVS+PS SFRDGA   VASQA++SLTEDH
Sbjct: 1   MNPTRRENMGRRVPLAGMETSIMATHAVEFIDVSVPSPSFRDGA---VASQATTSLTEDH 60

Query: 61  ASCAVVGDPPTYLIWRIRKTLPRVVELLEFSTANEFRRIGLRIAFPDALHPAVFVCKNEI 120
           ASC VVGDPPT+LIWRIRK LPR +E  EFSTANEFRR+GLRI+FPD LHPAVFVCKNEI
Sbjct: 61  ASCVVVGDPPTHLIWRIRKILPRALEFFEFSTANEFRRVGLRISFPDTLHPAVFVCKNEI 120

Query: 121 SSSTVYPFLMYAVTSSAVAYCLKLRNVSSYISCSVIPLDEVVEFNLQTHPNNKPVTSVFA 180
           S S+++P L+YAVT S VAYCLKLRN+SSYISCS IPLDEVVE +LQT PN KPVTSV A
Sbjct: 121 SPSSLHPLLVYAVTLSGVAYCLKLRNISSYISCSDIPLDEVVELDLQTDPNCKPVTSVSA 180

Query: 181 VSGCLVIGRSDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISRAVHIRLKLALAS 240
           ++GCLVIGR+DGSVSC+KLG LDQHTPGFEHELRDDSG NRLLGFISR   +   L +  
Sbjct: 181 IAGCLVIGRNDGSVSCFKLGLLDQHTPGFEHELRDDSGINRLLGFISRVKLVGAVLDMVI 240

Query: 241 EVIFGVQ 248
             ++G Q
Sbjct: 241 SQVYGRQ 244

[Close]

BLAST of Spg040060 vs. ExPASy TrEMBL
Match: A0A5D3B8G5 (Nuclear pore complex protein NUP160 isoform X5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00820 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.6e-102
Identity = 189/220 (85.91%), Postives = 204/220 (92.73%), Query Frame = 0


Query: 9   MGRRVPLAGMETSIMATDAVEFIDVSLPSSSFRDGAITSVASQASSSLTEDHASCAVVGD 68
           MGRR+PLAGMETS+MA D+VEFI VS+PSSS RD +ITSVASQA++SLTEDHASC VVGD
Sbjct: 1   MGRRMPLAGMETSVMANDSVEFIGVSVPSSSSRDASITSVASQATTSLTEDHASCVVVGD 60

Query: 69  PPTYLIWRIRKTLPRVVELLEFSTANEFRRIGLRIAFPDALHPAVFVCKNEISSSTVYPF 128
           PPTYLIW IRK LP VVELLEFST+NEFRRIGLRIAFP+ LHPAVFVCKNEISSS  +PF
Sbjct: 61  PPTYLIWSIRKILPHVVELLEFSTSNEFRRIGLRIAFPETLHPAVFVCKNEISSSMGHPF 120

Query: 129 LMYAVTSSAVAYCLKLRNVSSYISCSVIPLDEVVEFNLQTHPNNKPVTSVFAVSGCLVIG 188
           LMYAVTSS  AYCLKLRN+SSY+S S IPLDEVVEFNLQTHP+NKPVTSV A+SGCLVIG
Sbjct: 121 LMYAVTSSGFAYCLKLRNLSSYVSYSAIPLDEVVEFNLQTHPDNKPVTSVSAISGCLVIG 180

Query: 189 RSDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISR 229
           R+DGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISR
Sbjct: 181 RNDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISR 220

[Close]

BLAST of Spg040060 vs. ExPASy TrEMBL
Match: A0A6J1DQV6 (nuclear pore complex protein NUP160 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022966 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.6e-102
Identity = 192/247 (77.73%), Postives = 213/247 (86.23%), Query Frame = 0


Query: 1   MNPTRRENMGRRVPLAGMETSIMATDAVEFIDVSLPSSSFRDGAITSVASQASSSLTEDH 60
           MNPTRRENMGRRVPLAGMETSIMAT AVEFIDVS+PS SFRDGA   VASQA++SLTEDH
Sbjct: 1   MNPTRRENMGRRVPLAGMETSIMATHAVEFIDVSVPSPSFRDGA---VASQATTSLTEDH 60

Query: 61  ASCAVVGDPPTYLIWRIRKTLPRVVELLEFSTANEFRRIGLRIAFPDALHPAVFVCKNEI 120
           ASC VVGDPPT+LIWRIRK LPR +E  EFSTANEFRR+GLRI+FPD LHPAVFVCKNEI
Sbjct: 61  ASCVVVGDPPTHLIWRIRKILPRALEFFEFSTANEFRRVGLRISFPDTLHPAVFVCKNEI 120

Query: 121 SSSTVYPFLMYAVTSSAVAYCLKLRNVSSYISCSVIPLDEVVEFNLQTHPNNKPVTSVFA 180
           S S+++P L+YAVT S VAYCLKLRN+SSYISCS IPLDEVVE +LQT PN KPVTSV A
Sbjct: 121 SPSSLHPLLVYAVTLSGVAYCLKLRNISSYISCSDIPLDEVVELDLQTDPNCKPVTSVSA 180

Query: 181 VSGCLVIGRSDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISRAVHIRLKLALAS 240
           ++GCLVIGR+DGSVSC+KLG LDQHTPGFEHELRDDSG NRLLGFISR   +   L +  
Sbjct: 181 IAGCLVIGRNDGSVSCFKLGLLDQHTPGFEHELRDDSGINRLLGFISRVKLVGAVLDMVI 240

Query: 241 EVIFGVQ 248
             ++G Q
Sbjct: 241 SQVYGRQ 244

[Close]

BLAST of Spg040060 vs. TAIR 10
Match: AT1G33410.2 (SUPPRESSOR OF AUXIN RESISTANCE1 )

HSP 1 Score: 157.5 bits (397), Expect = 1.6e-38
Identity = 94/244 (38.52%), Postives = 137/244 (56.15%), Query Frame = 0


Query: 11  RRVPLAGMETSIM-ATDAVEFIDVSLPSSSFRDGAITSVASQASS----SLTEDHASCAV 70
           RR P AGME  +    + V++I++S+PS S    +I + +S+ +      L+ED+AS +V
Sbjct: 5   RRNPSAGMEVPVAGGGNVVKWIEISVPSPSVSSSSIGANSSEDNECVQLPLSEDYASSSV 64

Query: 71  VGDPPTYLIWRIRKTLPRVVELLEFSTANEFRRIGLRIAFPDALHPAVFVCKNEISSSTV 130
           +G+P    +WRI KT P  +ELL+ S  + F   GLR  F   L P  FV  +E   S  
Sbjct: 65  IGEPSISFVWRINKTSPNALELLQLSAKSGFPITGLRFVFAQTLSPFAFVYADEGGDSGR 124

Query: 131 YPFLMYAVTSSAVAYCLKLRNVSSYISCSVIPLDEVVEFNLQTHPNNKPVTSVFAVSGCL 190
             + +Y++T S V Y LKL N  +Y S SV PLD ++  +++ + N   VTSV A  G +
Sbjct: 125 LVYFLYSLTPSGVVYVLKLSNTLAYKSGSVFPLDHLIHLDVRPYLNESRVTSVAASPGFI 184

Query: 191 VIGRSDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRLLGFISRAVHIRLKLALASEVIFG 250
            +GRSDG VSC++     Q + GF  ELRDD+GF RL GF+        +L     V+  
Sbjct: 185 FLGRSDGCVSCFQPIVYFQKSSGFHQELRDDTGFGRLWGFV--------RLQCRGTVVAA 240

[Close]

BLAST of Spg040060 vs. TAIR 10
Match: AT1G33410.1 (SUPPRESSOR OF AUXIN RESISTANCE1 )

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-36
Identity = 87/217 (40.09%), Postives = 126/217 (58.06%), Query Frame = 0


Query: 11  RRVPLAGMETSIM-ATDAVEFIDVSLPSSSFRDGAITSVASQASS----SLTEDHASCAV 70
           RR P AGME  +    + V++I++S+PS S    +I + +S+ +      L+ED+AS +V
Sbjct: 5   RRNPSAGMEVPVAGGGNVVKWIEISVPSPSVSSSSIGANSSEDNECVQLPLSEDYASSSV 64

Query: 71  VGDPPTYLIWRIRKTLPRVVELLEFSTANEFRRIGLRIAFPDALHPAVFVCKNEISSSTV 130
           +G+P    +WRI KT P  +ELL+ S  + F   GLR  F   L P  FV  +E   S  
Sbjct: 65  IGEPSISFVWRINKTSPNALELLQLSAKSGFPITGLRFVFAQTLSPFAFVYADEGGDSGR 124

Query: 131 YPFLMYAVTSSAVAYCLKLRNVSSYISCSVIPLDEVVEFNLQTHPNNKPVTSVFAVSGCL 190
             + +Y++T S V Y LKL N  +Y S SV PLD ++  +++ + N   VTSV A  G +
Sbjct: 125 LVYFLYSLTPSGVVYVLKLSNTLAYKSGSVFPLDHLIHLDVRPYLNESRVTSVAASPGFI 184

Query: 191 VIGRSDGSVSCYKLGSLDQHTPGFEHELRDDSGFNRL 223
            +GRSDG VSC++     Q + GF  ELRDD+GF RL
Sbjct: 185 FLGRSDGCVSCFQPIVYFQKSSGFHQELRDDTGFGRL 221

The following BLAST results are available for this feature:

BLAST of Spg040060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550112.1	1.5e-107	87.28	nuclear pore complex protein NUP160 [Cucurbita pepo subsp. pepo]	[more]
XP_022969806.1	3.3e-107	86.40	nuclear pore complex protein NUP160 [Cucurbita maxima]	[more]
KAG7017151.1	3.1e-105	85.53	Nuclear pore complex protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6579709.1	4.0e-105	85.53	Nuclear pore complex protein 160, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022928856.1	1.5e-104	85.96	nuclear pore complex protein NUP160 [Cucurbita moschata]	[more]

BLAST of Spg040060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C811	2.1e-35	40.09	Nuclear pore complex protein NUP160 OS=Arabidopsis thaliana OX=3702 GN=NUP160 PE...	[more]

BLAST of Spg040060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HYU1	1.6e-107	86.40	nuclear pore complex protein NUP160 OS=Cucurbita maxima OX=3661 GN=LOC111468896 ...	[more]
A0A6J1ELG7	7.4e-105	85.96	nuclear pore complex protein NUP160 OS=Cucurbita moschata OX=3662 GN=LOC11143564...	[more]
A0A6J1DRY3	2.6e-102	77.73	nuclear pore complex protein NUP160 isoform X1 OS=Momordica charantia OX=3673 GN...	[more]
A0A5D3B8G5	2.6e-102	85.91	Nuclear pore complex protein NUP160 isoform X5 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1DQV6	2.6e-102	77.73	nuclear pore complex protein NUP160 isoform X2 OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Spg040060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33410.2	1.6e-38	38.52	SUPPRESSOR OF AUXIN RESISTANCE1	[more]
AT1G33410.1	1.5e-36	40.09	SUPPRESSOR OF AUXIN RESISTANCE1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021717	Nucleoporin Nup120/160	PANTHER	PTHR21286	NUCLEAR PORE COMPLEX PROTEIN NUP160	coord: 10..228

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg040060.1	Spg040060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033036	macromolecule localization
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0071705	nitrogen compound transport
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0071702	organic substance transport
cellular_component	GO:0005643	nuclear pore