Spg038833 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg038833
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold12: 5557756 .. 5557965 (+)
RNA-Seq ExpressionSpg038833
SyntenySpg038833
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATGAGACTCCCTCATTTTGCTGCTGCTGCTGCTGTTTTTGCTTTGGTTCTTGCAATGGTGTGCTTAGAGATGAAGGTCCATGCCATTGAGGATGAGATAGCTCCAATGCCTGCCATGGCTGCTGGCTCTGCATTTCCTTCTTCTGTTGCCTTTGCTTTCAATTCTGTATTCCCTCTTTTGCTCTGTATTTTTGGTGTCTAA

mRNA sequence

ATGGCTTCCATGAGACTCCCTCATTTTGCTGCTGCTGCTGCTGTTTTTGCTTTGGTTCTTGCAATGGTGTGCTTAGAGATGAAGGTCCATGCCATTGAGGATGAGATAGCTCCAATGCCTGCCATGGCTGCTGGCTCTGCATTTCCTTCTTCTGTTGCCTTTGCTTTCAATTCTGTATTCCCTCTTTTGCTCTGTATTTTTGGTGTCTAA

Coding sequence (CDS)

ATGGCTTCCATGAGACTCCCTCATTTTGCTGCTGCTGCTGCTGTTTTTGCTTTGGTTCTTGCAATGGTGTGCTTAGAGATGAAGGTCCATGCCATTGAGGATGAGATAGCTCCAATGCCTGCCATGGCTGCTGGCTCTGCATTTCCTTCTTCTGTTGCCTTTGCTTTCAATTCTGTATTCCCTCTTTTGCTCTGTATTTTTGGTGTCTAA

Protein sequence

MASMRLPHFAAAAAVFALVLAMVCLEMKVHAIEDEIAPMPAMAAGSAFPSSVAFAFNSVFPLLLCIFGV
Homology
[Close]
BLAST of Spg038833 vs. NCBI nr
Match: KGN58599.1 (hypothetical protein Csa_001638 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 9.7e-13
Identity = 49/69 (71.01%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 2  ASMRLPHFAAAAAVFALVLAMVCLEM-KVHAIEDEIAPMPAMAAGSAFPSSVAFAFNSVF 61
          +SMR PHF   A V  LVLAMV +EM KV +IEDE+APMPAMAAG AFPSSVA  FN V 
Sbjct: 3  SSMRFPHFVVVAVV--LVLAMVSIEMKKVDSIEDELAPMPAMAAGFAFPSSVALGFNFVV 62

Query: 62 PLLLCIFGV 70
          PLLLC+FGV
Sbjct: 63 PLLLCVFGV 69

[Close]
BLAST of Spg038833 vs. NCBI nr
Match: KAG6581583.1 (hypothetical protein SDJN03_21585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 0 

Query: 3  SMRLPHFAAAAAVFALVLAMVCLEM-KVHAIEDEIAPMPAMAAGSAFPSSVAFAFNSVFP 62
          SMRLPH+ A AAV  L LAMVC EM KVH IE EI+PMPAMAAGSA PS+VA+AFN+VFP
Sbjct: 4  SMRLPHYYATAAV--LALAMVCFEMKKVHGIEAEISPMPAMAAGSASPSTVAYAFNAVFP 63

Query: 63 LLLCIFG 69
           LLC FG
Sbjct: 64 -LLCTFG 67

[Close]
BLAST of Spg038833 vs. ExPASy TrEMBL
Match: A0A0A0LCE5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697920 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.7e-13
Identity = 49/69 (71.01%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 2  ASMRLPHFAAAAAVFALVLAMVCLEM-KVHAIEDEIAPMPAMAAGSAFPSSVAFAFNSVF 61
          +SMR PHF   A V  LVLAMV +EM KV +IEDE+APMPAMAAG AFPSSVA  FN V 
Sbjct: 3  SSMRFPHFVVVAVV--LVLAMVSIEMKKVDSIEDELAPMPAMAAGFAFPSSVALGFNFVV 62

Query: 62 PLLLCIFGV 70
          PLLLC+FGV
Sbjct: 63 PLLLCVFGV 69

The following BLAST results are available for this feature:
BLAST of Spg038833 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58599.19.7e-1371.01hypothetical protein Csa_001638 [Cucumis sativus][more]
KAG6581583.11.3e-1274.63hypothetical protein SDJN03_21585, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Spg038833 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg038833 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCE54.7e-1371.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697920 PE=4 SV=1[more]
BLAST of Spg038833 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg038833.1Spg038833.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane