Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACCACAGAGGCTCACCCTGTTCAACCATGGAATCATTCTACCCGATCCATCTCCATAGATAGGAAAAATTTCACAATAGCTTTTGATGAACATTTTAGAGGAAGTAGAGCAAAGATCACCGAATATAGCAAATACTCATCCCATTCGATTTCTCTTTCTTGGAAATCTCTAAAATGGCTTGCCTCATCCTTCAACACCATTGCTCACTCACCATGTTCGCACAAGTTCTTCTCGGATTTAAGGAGCGACGACTATACTCTTTGGATCGAAAAGTTGAATAACAAGAATGGCTTCTTTGTCGAAGTCAACCAGGTGCAAAATTCTGGTAGTCGACAAAGGATACTTATTCCATCGGAGAATAACAAACAAGGATGGTTTTCTTTCTTCTCGTTAATCTCTGAATACCCCGCTGAAGCCCATCGACAGCCCACAAAGCCTTCTCCTACATCTTTCAAGGACGTCCTTCAATCAAAGCCTCCAATAGATACTATTACTCCTCCCTCGAAAGAGCCTTCAGCCTCCACAATTGATGAAGAATGGAATGAGATCATTGTTCTCCAACGCAGCAATCTTCATGATGACTGGCCGAGCATTCATCAATCACTTATTGCCGGGCAAGCCATTCGATGTTGCATCAATCCGTTCCAGGCAAATAAAGCCATGCTCCATGTGTATGATCGAGCCATTGCTACAAATTTATGCTCTCACTCCGATTGGACCTTTCTTGGTAAGCATAAGTTGAAATTTTATCCTTTAACCACTACTTCTACACAACAGGATATTATGACACCATCTTATGGAGGTTGGATTGAGATCTCTTCTCTTCCCCCTACCTTGTGGACTGAGCGTATTTTCCGGTTCATTGGGGATTCCTGCGGCGGTTTTGTGGAGACTTCTAACCTCACTAATAGGATGATTATCGCAACTGAGGCTAGGATAAAAATTCGGCCAAATACTTCTGGTTTCATTCCCACCGCCGTAAAGCTCACATCAGACCTTGCCGGCGTTGAACTCACGGTGCAGACCAAAGGCATTTCCGGCAACCCTCACAGAATCGGCCTCATTAAAGATGACAAACCGAATATGGAATTTAAGGATATTGAATTAAAGAAGAAAGAGGAATCGGAAAAAGAGAATTCGAATTTTAATTCGAAAAGGAAATCTCCACCAGCTAATTTCCCAAAAATCTCGGTACCAAATTTTATCACCTCCAGTGCACCGCTTTTATCTGATAAAATCGACAAAGGAAAGAATTATCTCCCACCGCCTCCTTCTGATTCATCGGTTAGTCAACTGCCTGGGCCCACAATTCTTAAATTCGGCCACATTGGATCTACATCAAGGAATGAATTGAACGTTGGATCCGACACTAAAGCTTTTCTCTCCAGCCCATCTACAAACCCTACGGCCCACAACTCAACTCAAGACCCAACATCTCCTCGACCGTTGGACCTCACCATCTTTAATGATCCACTAATTGAAGGCCCAATTGATCCGAGCCAACCGTACCAGAACTCTCCATCCCCGATAGACATCATGCCCCCACTGCAACAGAATCCTACCCATAATACCTCCTCTCCAAATCCATTGGAACCTCCACAAATCCTACCCTACCATTCCCCACGGCTTTCTCCAGTACCAAATATGAAGTCTCCAACACCGAACACATTTCCCAATTGCCTTCAACATTTAGCCCCGATCTTAAGTAAACATGGCCTTTGTATTATGGCTCTACCAACAGTACCAAAGTCAAGTAAAAGGAAAAAATTGGCAACTACAGGCAAGAAACCTAAACTACAAAGGGAGGTACGAAATCTTCAATCTAATATCAATTATGATAAAGCAGCCACTTTGGCGTTAATGGAGGGGGCCGAGAATGTTATATGAAATTTTTGACATGGAATGTGCGTGGTTTGGGTTCATGGAAGAAAAGGGCTTTAATTAAGAAAACTATTCAGCAGCAAAACCCGGGCATTGTTCTTATTCAGGAGACTAAAAAATCTCAGATTTGTAGTAGGATTATTAAATCCCTATGGAGCTCTTCTCATATTGGTTGGACTTCTCTTGAATTTGTGGGTGCCTCTGGAGGCATTCTTATTATGTGGAGTGAACCAGAATTTTCAGTAAAGGAGACTATTCAAGGTCTTTTCACTCTCTCTATTCATATCTTTATGGCTGATAACTTCTCTTTTTGGCTATCGGCTATTTATGGCCCCTCTAGGCATGCTGACAGATCGGACTTTTGGAATGAACTTCACGACTTGGCTGGTTTAGGTGGTAACAATTGGATCCTTGGAGGAGATTTTAATGTCACCCGCTGGTCATGGGAAAAATCGCATGGCCGGCCCGTGACTAGGAGTATGCGTATTTTCAACCAATGGATCGATGATTACCATCTCATAGACACTCCTTTACAGAATGGATGCTACACGTGGTCCAGTTGTGGTGAAAATCATTATTGCTCATTGATTGATCGATTCTTAATGACGGATACCTGTCTCAATAAATTTGGTGCAGCTCGTTTTCTTCGTCTTGATAGGGTTACATCTGACCATTACCCATGTACTCTATCATTTGGGGATCTCTCTTGGGGCCCTTGTCCCTTTAGATTCGAGAATGCTTGGCTGAAAATAGACTCTTTTCGTGGTCTTATGGATAATTGGTGGTCTGAAAACACTGTTCAGGGTTGGCCAGGCCATGGGTTTATGATGAAACTTAAAGGGTTGAAATCTGAGCTCAGAAAATGGAATTTATCTCAGCGATCATCTGCTGCTCAACTTCCATCTCTTGTTACACAATTGAAATTGTTGGATGATACAGAGGACAGGGTTCCATTATCTATGGAACAAATATCTTCGAGAAGATTATTGCGAGAACAAATTGAGGATTTATCAGCCCAAGAACACATTTATTGGCACCAACGCTGTAAACTGAACTGGTTAAAAGAAGGTGATGAAAATACAAAATTTTTCCATAGAATTATGGCTGCCCCTAAAAGAAAGAATTCCATCTCAGAGATCTTGTCTAGAGAAGGCAATAGCCTCTTTACAGATAATGATATAGAAGCGGAGTTCCTTGGTTTTTATCAAACTTTGTTTACAAAGGACCGTGGCACTAGATTTCTACCAACTAATGTTGATTGGTGTCCAATTAGTGATTCACAATCGACAGGATTGGAGGCGGTTTTTTCTGAAGATGAGGTCTATCAAGCAGTTAAATCTTTAGGTTCGAGTAAATCTCCAGGTCCAGATGGTTTTACAGCTGAATTCTTCAAATTTTCTTGGCATACCATCAAACGTGATATTATGACTATGATGGAGGATTTCTATAATACAGGTATTATCAATGTATCTTTGAATGAAACTTATATCTGCCTTATTCCAAAGAAATTAGACTCTAAATCAGTATCAGACTTCCGACCGATTAGTCTAATCCCATGTGCATACAAGATTATAGCTAGAGTTTTGTCCAATCGGTTGAAAATGGTTTTGCCATCCACTATTGCGGAGAATCAAATGGCCTTTGTGGCTAACAGACAAATTCTCGATGCTTCGCTTATAGCAAATGAGCTGATTGATGATTGGAATTTATCTCATAAGAAAGGTGTGGTGATTAAGTTAGATCTTGAAAAGGCTTTTGATAAAGTCGATTGGGATTTTCTAGATGCAATTCTTCAGGCCAAGGGTTTTGGCTTGGTATGGAGGAAATGGATTTATGGATGTCTTTCTAGTGTTAACTACTCTATCATTATTAATGGAAAACCACGAGGCAAGATCATTCCCTCTCGAGGAATTCGTCAAGGGGATCCTCTTTCCCCCTTTCTTTTTATCTTGGTATCTGATTGCCTAAGTCGTTTATTATCACACAGCGCTAATATGGGTCGAATTGTCTCGCATCCGATTGGAAATTCACATCTTTATGTGAATCATTTACAATTTGCTGATGATACTTTATTATTCTCCATCTTTCGTAAGGATGCTTTGGCTAACATGTTCGATATTGTTAAAATTTTTGAGCTAGCTTCTGGATTGAATGTTAACTATTCCAAGAGTGAAGTTTTGGGAATTCACTTAGAGGAGTCAGAAATGGAATGGTTGACAACTACGTTTGGCTGTAAACAAGGAATTTGGCCTTCCACTTACCTTGGTTTACCTTTGGGAGGCAGTCCTAAAACTATTCCTTTTTGGCAGCCTGTGATTGAAAGAATCCAACATAAACTTCATAGTTGGAAATATTCATATATTTCGAAAGGTGGTCGACATACTCTTACTCAAGCAGTTCTCTCCTGTATGCCAATTTATTATTTATCCTTATTCAAATTGCCAGGAAAGGTTGCAAAAACTCTTGATAAGCTATTTCGTGATTTTTTTTGGGAAGGATCTAGAGGTGATGGTGGTATGCACAATATTAATTGGGCAACAGTACAACTCCCACATTTGATGGGGGGTATTGGTATTGGTAACTTAAAAAATCGCAATCTTGCTCTTCTTGCAAAGTGGATTTGGAGATTTTTACATGAGGAAAACGCACTATGGCACAAGCTGATTGTAGCTAAATATTATAACTATGGCTTGCCTAACCTCTGGCCTACCATTATTCAGAAAAGTTCTCACAAATCTCCTTGGCGATTCATTACGTCTACTATTGACCTTGTATCTTCACGTGTTAAAAGAAGGTTGGGTAACGGTCTTGCTACTTCATTCTGGCATGATTCGTGGTTAAATTGCGGTGTTCTGGCTACAAATTTTCCTCGTCTTTATCGTTTAACAGATCGTCCAAGGAGTTTGGTTGGTGAAACATGGATTGCTTATCAAACAGCATGGGATCTGAGTCTTCGGCGTAATTTAAATGATGTAGAGACAGAGGAATGGATGGATTTATCACTTATTCTTTCCTCCATCAGCTTACAGAACCGTAATGATTCCTGGATATGGCCTTTGGAATCGTCCAATATTTTTTCTGTTAAATCTCTCATGGAAGATTTAGTAGACTATTCGAATATGGCAAATGATCTATATAAGGCCATTTGGACAGATTTCTATCCAAAGAAGATCAAGATTTTTCTATGGGAGCTTAGTCATGGTGCTATTAATACAGTTGATCGACTTCAACGACGGATGCCTCATTTTCACTTGTCTCCATCTTGGTGCATAATGTGTGCTGCTAGCTCAGAATATCCTGGGCATTTATTTGTTCATTGTACCTTTGCATCCAGATATTGGTCAGAGATTCTTGATGCTTTTGGATGGTCCACCGTTTTTCCAAATTGCATTAACGATGTTCTTAATCTCATTTTTGTGGATCATCCCTTTCATGGAGAAAAGAAGATTTTGTGGCTTGCCTTGAACAGAGTCTTCTTTTGGTTTTTATGGGGCGAACGAAATTCTAGAATTTTCAGAGATTCTTTCTCTTCCTTTCATAAATTTATGGATCTAATTCTCTTTCATGCTTTGTATTGGTGTAAATGTAAACACCCCTTCTCTGATTATAGTTTATCCTTTTTGATTTCCAATTGGAAAGCTTTTATGTAA
mRNA sequence
ATGAAAACCACAGAGGCTCACCCTGTTCAACCATGGAATCATTCTACCCGATCCATCTCCATAGATAGGAAAAATTTCACAATAGCTTTTGATGAACATTTTAGAGGAAGTAGAGCAAAGATCACCGAATATAGCAAATACTCATCCCATTCGATTTCTCTTTCTTGGAAATCTCTAAAATGGCTTGCCTCATCCTTCAACACCATTGCTCACTCACCATGTTCGCACAAGTTCTTCTCGGATTTAAGGAGCGACGACTATACTCTTTGGATCGAAAAGTTGAATAACAAGAATGGCTTCTTTGTCGAAGTCAACCAGGTGCAAAATTCTGGTAGTCGACAAAGGATACTTATTCCATCGGAGAATAACAAACAAGGATGGTTTTCTTTCTTCTCGTTAATCTCTGAATACCCCGCTGAAGCCCATCGACAGCCCACAAAGCCTTCTCCTACATCTTTCAAGGACGTCCTTCAATCAAAGCCTCCAATAGATACTATTACTCCTCCCTCGAAAGAGCCTTCAGCCTCCACAATTGATGAAGAATGGAATGAGATCATTGTTCTCCAACGCAGCAATCTTCATGATGACTGGCCGAGCATTCATCAATCACTTATTGCCGGGCAAGCCATTCGATGTTGCATCAATCCGTTCCAGGCAAATAAAGCCATGCTCCATGTGTATGATCGAGCCATTGCTACAAATTTATGCTCTCACTCCGATTGGACCTTTCTTGGTAAGCATAAGTTGAAATTTTATCCTTTAACCACTACTTCTACACAACAGGATATTATGACACCATCTTATGGAGGTTGGATTGAGATCTCTTCTCTTCCCCCTACCTTGTGGACTGAGCGTATTTTCCGGTTCATTGGGGATTCCTGCGGCGGTTTTGTGGAGACTTCTAACCTCACTAATAGGATGATTATCGCAACTGAGGCTAGGATAAAAATTCGGCCAAATACTTCTGGTTTCATTCCCACCGCCGTAAAGCTCACATCAGACCTTGCCGGCGTTGAACTCACGGTGCAGACCAAAGGCATTTCCGGCAACCCTCACAGAATCGGCCTCATTAAAGATGACAAACCGAATATGGAATTTAAGGATATTGAATTAAAGAAGAAAGAGGAATCGGAAAAAGAGAATTCGAATTTTAATTCGAAAAGGAAATCTCCACCAGCTAATTTCCCAAAAATCTCGGTACCAAATTTTATCACCTCCAGTGCACCGCTTTTATCTGATAAAATCGACAAAGGAAAGAATTATCTCCCACCGCCTCCTTCTGATTCATCGGTTAGTCAACTGCCTGGGCCCACAATTCTTAAATTCGGCCACATTGGATCTACATCAAGGAATGAATTGAACGTTGGATCCGACACTAAAGCTTTTCTCTCCAGCCCATCTACAAACCCTACGGCCCACAACTCAACTCAAGACCCAACATCTCCTCGACCGTTGGACCTCACCATCTTTAATGATCCACTAATTGAAGGCCCAATTGATCCGAGCCAACCGTACCAGAACTCTCCATCCCCGATAGACATCATGCCCCCACTGCAACAGAATCCTACCCATAATACCTCCTCTCCAAATCCATTGGAACCTCCACAAATCCTACCCTACCATTCCCCACGGCTTTCTCCAGTACCAAATATGAAGTCTCCAACACCGAACACATTTCCCAATTGCCTTCAACATTTAGCCCCGATCTTAAGTAAACATGGCCTTTGTATTATGGCTCTACCAACAGTACCAAAGTCAAGGGGCCGAGAATGTTATATGAAATTTTTGACATGGAATGTGCGTGGTTTGGGTTCATGGAAGAAAAGGGCTTTAATTAAGAAAACTATTCAGCAGCAAAACCCGGGCATTGTTCTTATTCAGGAGACTAAAAAATCTCAGATTTGTAGTAGGATTATTAAATCCCTATGGAGCTCTTCTCATATTGGTTGGACTTCTCTTGAATTTGTGGGTGCCTCTGGAGGCATTCTTATTATGTGGAGTGAACCAGAATTTTCAGTAAAGGAGACTATTCAAGGTCTTTTCACTCTCTCTATTCATATCTTTATGGCTGATAACTTCTCTTTTTGGCTATCGGCTATTTATGGCCCCTCTAGGCATGCTGACAGATCGGACTTTTGGAATGAACTTCACGACTTGGCTGGTTTAGGTGGTAACAATTGGATCCTTGGAGGAGATTTTAATGTCACCCGCTGGTCATGGGAAAAATCGCATGGCCGGCCCGTGACTAGGAGTATGCGTATTTTCAACCAATGGATCGATGATTACCATCTCATAGACACTCCTTTACAGAATGGATGCTACACGTGGTCCAGTTGTGGTGAAAATCATTATTGCTCATTGATTGATCGATTCTTAATGACGGATACCTGTCTCAATAAATTTGGTGCAGCTCGTTTTCTTCGTCTTGATAGGGTTACATCTGACCATTACCCATGTACTCTATCATTTGGGGATCTCTCTTGGGGCCCTTGTCCCTTTAGATTCGAGAATGCTTGGCTGAAAATAGACTCTTTTCGTGGTCTTATGGATAATTGGTGGTCTGAAAACACTGTTCAGGGTTGGCCAGGCCATGGGTTTATGATGAAACTTAAAGGGTTGAAATCTGAGCTCAGAAAATGGAATTTATCTCAGCGATCATCTGCTGCTCAACTTCCATCTCTTGTTACACAATTGAAATTGTTGGATGATACAGAGGACAGGACAGAGGAATGGATGGATTTATCACTTATTCTTTCCTCCATCAGCTTACAGAACCGTAATGATTCCTGGATATGGCCTTTGGAATCGTCCAATATTTTTTCTGTTAAATCTCTCATGGAAGATTTAGTAGACTATTCGAATATGGCAAATGATCTATATAAGGCCATTTGGACAGATTTCTATCCAAAGAAGATCAAGATTTTTCTATGGGAGCTTAGTCATGGTGCTATTAATACAGTTGATCGACTTCAACGACGGATGCCTCATTTTCACTTGTCTCCATCTTGGTGCATAATGTGTGCTGCTAGCTCAGAATATCCTGGGCATTTATTTGTTCATTGTACCTTTGCATCCAGATATTGGTCAGAGATTCTTGATGCTTTTGGATGGTCCACCGTTTTTCCAAATTGCATTAACGATGTTCTTAATCTCATTTTTGTGGATCATCCCTTTCATGGAGAAAAGAAGATTTTGTGGCTTGCCTTGAACAGAGTCTTCTTTTGGTTTTTATGGGGCGAACGAAATTCTAGAATTTTCAGAGATTCTTTCTCTTCCTTTCATAAATTTATGGATCTAATTCTCTTTCATGCTTTGTATTGGTGTAAATGTAAACACCCCTTCTCTGATTATAGTTTATCCTTTTTGATTTCCAATTGGAAAGCTTTTATGTAA
Coding sequence (CDS)
ATGAAAACCACAGAGGCTCACCCTGTTCAACCATGGAATCATTCTACCCGATCCATCTCCATAGATAGGAAAAATTTCACAATAGCTTTTGATGAACATTTTAGAGGAAGTAGAGCAAAGATCACCGAATATAGCAAATACTCATCCCATTCGATTTCTCTTTCTTGGAAATCTCTAAAATGGCTTGCCTCATCCTTCAACACCATTGCTCACTCACCATGTTCGCACAAGTTCTTCTCGGATTTAAGGAGCGACGACTATACTCTTTGGATCGAAAAGTTGAATAACAAGAATGGCTTCTTTGTCGAAGTCAACCAGGTGCAAAATTCTGGTAGTCGACAAAGGATACTTATTCCATCGGAGAATAACAAACAAGGATGGTTTTCTTTCTTCTCGTTAATCTCTGAATACCCCGCTGAAGCCCATCGACAGCCCACAAAGCCTTCTCCTACATCTTTCAAGGACGTCCTTCAATCAAAGCCTCCAATAGATACTATTACTCCTCCCTCGAAAGAGCCTTCAGCCTCCACAATTGATGAAGAATGGAATGAGATCATTGTTCTCCAACGCAGCAATCTTCATGATGACTGGCCGAGCATTCATCAATCACTTATTGCCGGGCAAGCCATTCGATGTTGCATCAATCCGTTCCAGGCAAATAAAGCCATGCTCCATGTGTATGATCGAGCCATTGCTACAAATTTATGCTCTCACTCCGATTGGACCTTTCTTGGTAAGCATAAGTTGAAATTTTATCCTTTAACCACTACTTCTACACAACAGGATATTATGACACCATCTTATGGAGGTTGGATTGAGATCTCTTCTCTTCCCCCTACCTTGTGGACTGAGCGTATTTTCCGGTTCATTGGGGATTCCTGCGGCGGTTTTGTGGAGACTTCTAACCTCACTAATAGGATGATTATCGCAACTGAGGCTAGGATAAAAATTCGGCCAAATACTTCTGGTTTCATTCCCACCGCCGTAAAGCTCACATCAGACCTTGCCGGCGTTGAACTCACGGTGCAGACCAAAGGCATTTCCGGCAACCCTCACAGAATCGGCCTCATTAAAGATGACAAACCGAATATGGAATTTAAGGATATTGAATTAAAGAAGAAAGAGGAATCGGAAAAAGAGAATTCGAATTTTAATTCGAAAAGGAAATCTCCACCAGCTAATTTCCCAAAAATCTCGGTACCAAATTTTATCACCTCCAGTGCACCGCTTTTATCTGATAAAATCGACAAAGGAAAGAATTATCTCCCACCGCCTCCTTCTGATTCATCGGTTAGTCAACTGCCTGGGCCCACAATTCTTAAATTCGGCCACATTGGATCTACATCAAGGAATGAATTGAACGTTGGATCCGACACTAAAGCTTTTCTCTCCAGCCCATCTACAAACCCTACGGCCCACAACTCAACTCAAGACCCAACATCTCCTCGACCGTTGGACCTCACCATCTTTAATGATCCACTAATTGAAGGCCCAATTGATCCGAGCCAACCGTACCAGAACTCTCCATCCCCGATAGACATCATGCCCCCACTGCAACAGAATCCTACCCATAATACCTCCTCTCCAAATCCATTGGAACCTCCACAAATCCTACCCTACCATTCCCCACGGCTTTCTCCAGTACCAAATATGAAGTCTCCAACACCGAACACATTTCCCAATTGCCTTCAACATTTAGCCCCGATCTTAAGTAAACATGGCCTTTGTATTATGGCTCTACCAACAGTACCAAAGTCAAGGGGCCGAGAATGTTATATGAAATTTTTGACATGGAATGTGCGTGGTTTGGGTTCATGGAAGAAAAGGGCTTTAATTAAGAAAACTATTCAGCAGCAAAACCCGGGCATTGTTCTTATTCAGGAGACTAAAAAATCTCAGATTTGTAGTAGGATTATTAAATCCCTATGGAGCTCTTCTCATATTGGTTGGACTTCTCTTGAATTTGTGGGTGCCTCTGGAGGCATTCTTATTATGTGGAGTGAACCAGAATTTTCAGTAAAGGAGACTATTCAAGGTCTTTTCACTCTCTCTATTCATATCTTTATGGCTGATAACTTCTCTTTTTGGCTATCGGCTATTTATGGCCCCTCTAGGCATGCTGACAGATCGGACTTTTGGAATGAACTTCACGACTTGGCTGGTTTAGGTGGTAACAATTGGATCCTTGGAGGAGATTTTAATGTCACCCGCTGGTCATGGGAAAAATCGCATGGCCGGCCCGTGACTAGGAGTATGCGTATTTTCAACCAATGGATCGATGATTACCATCTCATAGACACTCCTTTACAGAATGGATGCTACACGTGGTCCAGTTGTGGTGAAAATCATTATTGCTCATTGATTGATCGATTCTTAATGACGGATACCTGTCTCAATAAATTTGGTGCAGCTCGTTTTCTTCGTCTTGATAGGGTTACATCTGACCATTACCCATGTACTCTATCATTTGGGGATCTCTCTTGGGGCCCTTGTCCCTTTAGATTCGAGAATGCTTGGCTGAAAATAGACTCTTTTCGTGGTCTTATGGATAATTGGTGGTCTGAAAACACTGTTCAGGGTTGGCCAGGCCATGGGTTTATGATGAAACTTAAAGGGTTGAAATCTGAGCTCAGAAAATGGAATTTATCTCAGCGATCATCTGCTGCTCAACTTCCATCTCTTGTTACACAATTGAAATTGTTGGATGATACAGAGGACAGGACAGAGGAATGGATGGATTTATCACTTATTCTTTCCTCCATCAGCTTACAGAACCGTAATGATTCCTGGATATGGCCTTTGGAATCGTCCAATATTTTTTCTGTTAAATCTCTCATGGAAGATTTAGTAGACTATTCGAATATGGCAAATGATCTATATAAGGCCATTTGGACAGATTTCTATCCAAAGAAGATCAAGATTTTTCTATGGGAGCTTAGTCATGGTGCTATTAATACAGTTGATCGACTTCAACGACGGATGCCTCATTTTCACTTGTCTCCATCTTGGTGCATAATGTGTGCTGCTAGCTCAGAATATCCTGGGCATTTATTTGTTCATTGTACCTTTGCATCCAGATATTGGTCAGAGATTCTTGATGCTTTTGGATGGTCCACCGTTTTTCCAAATTGCATTAACGATGTTCTTAATCTCATTTTTGTGGATCATCCCTTTCATGGAGAAAAGAAGATTTTGTGGCTTGCCTTGAACAGAGTCTTCTTTTGGTTTTTATGGGGCGAACGAAATTCTAGAATTTTCAGAGATTCTTTCTCTTCCTTTCATAAATTTATGGATCTAATTCTCTTTCATGCTTTGTATTGGTGTAAATGTAAACACCCCTTCTCTGATTATAGTTTATCCTTTTTGATTTCCAATTGGAAAGCTTTTATGTAA
Protein sequence
MKTTEAHPVQPWNHSTRSISIDRKNFTIAFDEHFRGSRAKITEYSKYSSHSISLSWKSLKWLASSFNTIAHSPCSHKFFSDLRSDDYTLWIEKLNNKNGFFVEVNQVQNSGSRQRILIPSENNKQGWFSFFSLISEYPAEAHRQPTKPSPTSFKDVLQSKPPIDTITPPSKEPSASTIDEEWNEIIVLQRSNLHDDWPSIHQSLIAGQAIRCCINPFQANKAMLHVYDRAIATNLCSHSDWTFLGKHKLKFYPLTTTSTQQDIMTPSYGGWIEISSLPPTLWTERIFRFIGDSCGGFVETSNLTNRMIIATEARIKIRPNTSGFIPTAVKLTSDLAGVELTVQTKGISGNPHRIGLIKDDKPNMEFKDIELKKKEESEKENSNFNSKRKSPPANFPKISVPNFITSSAPLLSDKIDKGKNYLPPPPSDSSVSQLPGPTILKFGHIGSTSRNELNVGSDTKAFLSSPSTNPTAHNSTQDPTSPRPLDLTIFNDPLIEGPIDPSQPYQNSPSPIDIMPPLQQNPTHNTSSPNPLEPPQILPYHSPRLSPVPNMKSPTPNTFPNCLQHLAPILSKHGLCIMALPTVPKSRGRECYMKFLTWNVRGLGSWKKRALIKKTIQQQNPGIVLIQETKKSQICSRIIKSLWSSSHIGWTSLEFVGASGGILIMWSEPEFSVKETIQGLFTLSIHIFMADNFSFWLSAIYGPSRHADRSDFWNELHDLAGLGGNNWILGGDFNVTRWSWEKSHGRPVTRSMRIFNQWIDDYHLIDTPLQNGCYTWSSCGENHYCSLIDRFLMTDTCLNKFGAARFLRLDRVTSDHYPCTLSFGDLSWGPCPFRFENAWLKIDSFRGLMDNWWSENTVQGWPGHGFMMKLKGLKSELRKWNLSQRSSAAQLPSLVTQLKLLDDTEDRTEEWMDLSLILSSISLQNRNDSWIWPLESSNIFSVKSLMEDLVDYSNMANDLYKAIWTDFYPKKIKIFLWELSHGAINTVDRLQRRMPHFHLSPSWCIMCAASSEYPGHLFVHCTFASRYWSEILDAFGWSTVFPNCINDVLNLIFVDHPFHGEKKILWLALNRVFFWFLWGERNSRIFRDSFSSFHKFMDLILFHALYWCKCKHPFSDYSLSFLISNWKAFM
Homology
BLAST of Spg038760 vs. NCBI nr
Match:
XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])
HSP 1 Score: 335.1 bits (858), Expect = 2.3e-87
Identity = 159/314 (50.64%), Postives = 208/314 (66.24%), Query Frame = 0
Query: 593 MKFLTWNVRGLGSWKKRALIKKTIQQQNPGIVLIQETKKSQICSRIIKSLWSSSHIGWTS 652
MKFLTWNVRGL SWKK ALIK+ I + NP +V++QETK S + I+KSLWS+ I W++
Sbjct: 1 MKFLTWNVRGLDSWKKGALIKQFISRLNPNVVILQETKLSYMDILIVKSLWSAHGINWSA 60
Query: 653 LEFVGASGGILIMWSEPEFSVKETIQGLFTLSIHIFMADNFSFWLSAIYGPSRHADRSDF 712
L+ G + GILI+W++P+ E I+G+F+L+I+ ++D F FW+S IYGPS F
Sbjct: 61 LDASGMASGILILWNDPDLKAAEMIEGVFSLTINFCLSDGFLFWVSGIYGPSTTEFHYLF 120
Query: 713 WNELHDLAGLGGNNWILGGDFNVTRWSWEKSHGRPVTRSMRIFNQWIDDYHLIDTPLQNG 772
W EL DL+ L N+WIL GDFNVTRWSWEKS+GRP+T+SM +FN +I+D LID PL NG
Sbjct: 121 WQELLDLSDLCENHWILAGDFNVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNG 180
Query: 773 CYTWSSCGENHYCSLIDRFLMTDTCLNKFGAARFLRLDRVTSDHYPCTLSFGDLSWGPCP 832
+TWS N SLID FL+T+ C++K G R+ R TSDH+P L FG +WG P
Sbjct: 181 QHTWS---RNTSFSLIDCFLLTNGCIDKLGMPIAKRMTRTTSDHFPILLDFGQNNWGLTP 240
Query: 833 FRFENAWLKIDSFRGLMDNWWSENTVQGWPGHGFMMKLKGLKSELRKWNLSQ-RSSAAQL 892
FRFEN WL +F+ ++ WW + GWPGHG MMKLK LK ++ W R +Q
Sbjct: 241 FRFENMWLSHKTFKPFLETWWGNKPLHGWPGHGLMMKLKSLKYAIKLWITEHFRCIHSQK 300
Query: 893 PSLVTQLKLLDDTE 906
L + LDD E
Sbjct: 301 EDLTNLMNSLDDLE 311
BLAST of Spg038760 vs. NCBI nr
Match:
TYJ99315.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 293.1 bits (749), Expect = 1.0e-74
Identity = 270/1027 (26.29%), Postives = 428/1027 (41.67%), Query Frame = 0
Query: 17 RSISIDRKNFTIAFDEHFRGSRAKITEYSKYSSHSISLSWKSLKWLASSFNTIAHSPCSH 76
RS ++RK F + D++ + + +TE + + SI +S + L W+ + ++ +P ++
Sbjct: 63 RSCKVERKEFVLHLDKYSKHTHYWLTETGAHKAFSIEVSPRDLDWIRCTLKSLIATPNTN 122
Query: 77 KFFSDLRSDDYTLWIEKLNNKNGFFVEVNQVQNSGSRQRILIPSENNKQGWFSFFSLISE 136
+FF + R + +WI K N G E+ +V + IL+P +K GW SF S+I+
Sbjct: 123 RFFLETRDSEQRIWIRKTRNSKGCTAEIFRVDQKNRKSCILVPEGPDKSGWVSFLSMIT- 182
Query: 137 YPAEAHRQPTKPS--PTSFKDVLQSKPPID-------------------------TITPP 196
P + T+P+ P + D S PPID +
Sbjct: 183 -PKVEVKAKTRPTFLPRTSPDCRLS-PPIDYHKRSYAKAVTEGRPFATSDSSDSYDSSDS 242
Query: 197 SKEPSASTIDEEWNEI----IVLQRSNLHDDWPSIHQSLIAGQAIRCCINPFQANKAMLH 256
S S S D +++ +V+ R HDDW I Q+L N F A KA++H
Sbjct: 243 SHSSSNSFCDSPSSDLLENTVVIVRRFFHDDWHKILQNLRKQTEESFTYNAFHAEKALVH 302
Query: 257 VYDRAIATNLCSHSDWTFLGKHKLKFYPLTTTSTQQDIMTPSYGGWIEISSLPPTLWTER 316
A LC + W+ +GK+ ++F + + PSYGGW +P LW
Sbjct: 303 FSSNIPANLLCQNKGWSTVGKYSVRFEKWSPVYHATPKLIPSYGGWTTFRGIPLHLWNMM 362
Query: 317 IFRFIGDSCGGFVETSNLTNRMIIATEARIKIRPNTSGFIPTAVKLTSDLAG---VELTV 376
F+ IG +C G ++ + T EARIK+R N SGF+P V++ + V++
Sbjct: 363 TFQQIGKACEGLIKVAEETRSAKNLIEARIKVRYNYSGFLPANVRIFDNEGNKFFVQVVT 422
Query: 377 QTKG---ISGNPHRIGLIKDDKPNMEFKDIELKKK----EESEKENSNFNSK----RKSP 436
+G I N G K + F D + + E SE + +F S RKS
Sbjct: 423 HPEGKWLIERNVRLHGTFK-RQAAASFDDFNPESEQFFFEGSEAISPDFLSTSSDGRKSS 482
Query: 437 PANFPK-----ISVPNFITSSAPLLSDKIDKGKNYLPPPPSDSSVSQLPGPT---ILKFG 496
+ P I P+ + L++++ N L + S + L G + +L G
Sbjct: 483 TPDQPSALKSVIIKPDRNATLPSFLNEELVNDSN-LHATANKSKLEILSGISNDGVLDKG 542
Query: 497 ----HIGSTSRNELNVG-SDTKAFLSSPSTNPTAHNSTQDPTSPRP------LDLTIFND 556
I + LN+ S K +SPS N P + P + +
Sbjct: 543 KQKVDIQLQPNSALNLDKSKRKVSFNSPSNKTNIFNPDSAPANHSPSLNSPEKKQKVSRE 602
Query: 557 PLIEGPIDPSQPYQ--NSPSPIDIMPPLQ------------------------QNPTHNT 616
I+ +QP N + I P+Q +P +
Sbjct: 603 RSIKKKSSSTQPNSKANQNKGVFITQPIQIVAHDRDAAKKGLSLTVDLGDLPALDPNKSL 662
Query: 617 SSPNPLEPPQILPYHSPRLSP-VPNMKSP---TPNTFPNCLQHLAPILSKHGLCIMALPT 676
+ + +++ + + P P MK P N+ + K
Sbjct: 663 EDHHNSDNAEVVDITNTEVVPETPEMKMPVNENSNSSSEANYRKPKHVHKRKYYYRKKEE 722
Query: 677 VPKSRGRECYMKFLTWNVRGLGSWKKRALIKKTIQQQNPGIVLIQETKKSQICS------ 736
K E + K L SW K+ +K + + G +Q+ S
Sbjct: 723 KEKDPDSEAFKKQLV-------SWLKKNGLKLSTDTDSSGATTSTNVLLNQMNSGLKITN 782
Query: 737 -RIIKSLWSSSHIGWTSLEFVGASGGILIMWSEPEFSVKETIQGLFTLSIHIFMADNFSF 796
RIIKSLW S+ I W + G+SGGILI+W S+ +GLF+LS + + +N S+
Sbjct: 783 KRIIKSLWPSNSINWIAKNASGSSGGILILWDAQNHSLLSQEEGLFSLSANFLLNNNSSW 842
Query: 797 WLSAIYGPSRHADRSDFWNELHDLAGLGGNNWILGGDFNVTRWSWEKSHGRPVTRSMRIF 856
WL+ +YGP + +R FW ELH+L L WILGGD NV R E + + + R+
Sbjct: 843 WLTGLYGPVKRRERIHFWAELHNLQHLNSFPWILGGDLNVIRMREESTSVLSSSHNSRML 902
Query: 857 NQWIDDYHLIDTPLQNGCYTWSSCGENHYCSLIDRFLMTDTCLNKFGAARFLRLDRVTSD 916
N +I + LID PL N +TWS+ S IDRFL + N F L R TSD
Sbjct: 903 NNFISNNLLIDPPLTNNRFTWSNLRNPPTFSRIDRFLYNSSWENLFSPHTTRTLPRSTSD 962
Query: 917 HYP--CTLSFGDLSWGPCPFRFENAWLKIDSFRGLMDNWWSENTVQGWPGHGFMMKLKGL 933
H+P C S LSWGP PFR + L F+ M WW + G+PG F+ +LK L
Sbjct: 963 HFPLVCEDSNPKLSWGPIPFRLNSITLSDPEFKRNMGRWWENSIQAGYPGFSFIQRLKSL 1022
BLAST of Spg038760 vs. NCBI nr
Match:
RVX11275.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])
HSP 1 Score: 277.7 bits (709), Expect = 4.4e-70
Identity = 133/293 (45.39%), Postives = 181/293 (61.77%), Query Frame = 0
Query: 589 RECYMKFLTWNVRGLGSWKKRALIKKTIQQQNPGIVLIQETKKSQICSRIIKSLWSSSHI 648
R +MK ++WN RGLGS KKR ++K + + P +V+IQETKK + R++ S+WS +
Sbjct: 54 RVFHMKIISWNTRGLGSKKKRRVVKNFLSSEKPDVVMIQETKKEECDRRLVGSVWSVRNK 113
Query: 649 GWTSLEFVGASGGILIMWSEPEFSVKETIQGLFTLSIHIFMADNFSFWLSAIYGPSRHAD 708
W +L GASGGILI+W + +E + G F++SI M + S WLSA+YGP+ A
Sbjct: 114 DWAALPASGASGGILIIWDSKKLRREEVVLGSFSVSIKFAMDECESLWLSAVYGPNNSAL 173
Query: 709 RSDFWNELHDLAGLGGNNWILGGDFNVTRWSWEKSHGRPVTRSMRIFNQWIDDYHLIDTP 768
R DFW EL D+AGL W +GGDFNV R S EK G +T M+ F+++I D LID+P
Sbjct: 174 RKDFWVELSDIAGLSHPRWCVGGDFNVIRRSSEKLGGSRLTPCMKDFDEFIRDCELIDSP 233
Query: 769 LQNGCYTWSSCGENHYCSLIDRFLMTDTCLNKFGAARFLRLDRVTSDHYPCTLSFGDLSW 828
L++ YTWS+ EN C +DRFL ++ F + L R TSDH+P L W
Sbjct: 234 LRSASYTWSNMQENPVCKRLDRFLYSNEWEQVFPQSLQGVLPRWTSDHWPIVLETNPFKW 293
Query: 829 GPCPFRFENAWLKIDSFRGLMDNWWSENTVQGWPGHGFMMKLKGLKSELRKWN 882
GP PFRFEN WL+ SF+ WWSE GW GH FM KL+ +K++L++WN
Sbjct: 294 GPTPFRFENMWLQHSSFKENFGRWWSEFQGNGWEGHKFMRKLQFVKAKLKEWN 346
BLAST of Spg038760 vs. NCBI nr
Match:
RVX11275.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])
HSP 1 Score: 101.3 bits (251), Expect = 5.7e-17
Identity = 56/168 (33.33%), Postives = 77/168 (45.83%), Query Frame = 0
Query: 928 DSWIWPLESSNIFSVKSLMEDLVDYSNMANDL-YKAIWTDFYPKKIKIFLWELSHGAINT 987
D W + S +F+VKS L Y K +W P K+K F+W ++H +NT
Sbjct: 1021 DKRSWSISPSGLFTVKSFFLALSQYFESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLNT 1080
Query: 988 VDRLQRRMPHFHLSPSWCIMCAASSEYPGHLFVHCTFASRYWSEILDAFGWSTVFPNCIN 1047
D LQ R PH LSP+ C +C E HLF+HC+ W + V P I+
Sbjct: 1081 NDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSIS 1140
Query: 1048 DVLNLIFVDHPFHGEKK---ILWLALNRVFFWFLWGERNSRIFRDSFS 1092
D + F + G K +LW W +W ERN+RIF D F+
Sbjct: 1141 D---MFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKFA 1185
HSP 2 Score: 277.3 bits (708), Expect = 5.8e-70
Identity = 202/776 (26.03%), Postives = 293/776 (37.76%), Query Frame = 0
Query: 594 KFLTWNVRGLGSWKKRALIKKTIQQQNPGIVLIQETKKSQICSRIIKSLWSSSHIGWTSL 653
K L+WN RGLGS K ++++ + Q+P +V++QETK+ R + S+W + W +L
Sbjct: 278 KILSWNTRGLGSKNKMRIVRRFLSSQSPDVVMLQETKREIWDRRFVSSVWKGRSMEWAAL 337
Query: 654 EFVGASGGILIMWSEPEFSVKETIQGLFTLSIHIFMADNFSFWLSAIYGPSRHADRSDFW 713
GASGGI+IMW +F E + G F++++ + + SFWL+++YGP++ R DFW
Sbjct: 338 PACGASGGIVIMWDSNKFKFTEKVLGSFSVTVKLNSGEEGSFWLTSVYGPNKPLWRKDFW 397
Query: 714 NELHDLAGLGGNNWILGGDFNVTRWSWEKSHGRPVTRSMRIFNQWIDDYHLIDTPLQNGC 773
EL DL GL W +GG+FNV R EK T +MR F+++I + L+D L+N
Sbjct: 398 LELQDLYGLTFPIWCVGGNFNVIRRISEKLGDSRSTFNMRCFDEFIRESGLLDPTLRNAA 457
Query: 774 YTWSSCGENHYCSLIDRFLMTDTCLNKFGAARFLRLDRVTSDHYPCTLSFGDLSWGPCPF 833
+TWS+ + +DRFL + + F + L R TSDH P L L WGP PF
Sbjct: 458 FTWSNMQVDSIFKRLDRFLFSSEWDSFFSQSLQEALPRWTSDHNPICLETNPLKWGPTPF 517
Query: 834 RFENAWLKIDSFRGLMDNWWSENTVQGWPGHGFMMKLKGLKSELRKWN------------ 893
RFEN WL F+ +WW E TV+GW GH FM KLK +KS+L+ WN
Sbjct: 518 RFENMWLLHLEFKEKFSDWWQECTVEGWEGHKFMRKLKFVKSKLKDWNKVAFGDLREEKT 577
Query: 894 -------LSQRSSAAQLPSLV--------------------------------------- 953
+ R + + SL+
Sbjct: 578 HSFGLRMANGRRNRKFIESLIFERGVTLSNIEEIVNLFGKLYSKPEGASWRVEGVDWVPI 637
Query: 954 ----------------TQLKLLDDTEDRT------------EEW---------------- 1013
++ + +++T E W
Sbjct: 638 QGESAVCLDKPFFEEEVRMAVFHLNKEKTPGLNGFTIAVYQEYWDVIKEDLMRVFLEFHT 697
Query: 1014 -----------------------------MDLSLILSSISLQNRND-------------- 1073
+D LI + + + R
Sbjct: 698 NGIINQRRLRKVFHEVFGSQGAFVEGRHILDAMLIANEVVDEKRRSGEEGVVFKIDFKKA 757
Query: 1074 -----------------------SWIWPLESSNIFSVK---------------------- 1129
SWI SS+ F++
Sbjct: 758 YDHVDWGFLDHVLERKGFSPKWRSWIRGCLSSSSFAILVNGNAKGWVKASRGLRQGDPLS 817
BLAST of Spg038760 vs. NCBI nr
Match:
CAN69126.1 (hypothetical protein VITISV_008195 [Vitis vinifera])
HSP 1 Score: 275.0 bits (702), Expect = 2.9e-69
Identity = 134/295 (45.42%), Postives = 181/295 (61.36%), Query Frame = 0
Query: 587 RGRECYMKFLTWNVRGLGSWKKRALIKKTIQQQNPGIVLIQETKKSQICSRIIKSLWSSS 646
R R +MK ++WN RGLGS KKR ++K + + P +V+IQETKK + R++ S+WS
Sbjct: 751 RVRLFHMKIISWNTRGLGSKKKRRVVKNFLSSEKPDVVMIQETKKEECDRRLVGSVWSVR 810
Query: 647 HIGWTSLEFVGASGGILIMWSEPEFSVKETIQGLFTLSIHIFMADNFSFWLSAIYGPSRH 706
+ W +L GASGGILI+W + +E + G F++SI M S WLSA+YGP+
Sbjct: 811 NKDWAALPASGASGGILIIWDSIKMRREEVVLGSFSVSIKFAMDGCESLWLSAVYGPNNS 870
Query: 707 ADRSDFWNELHDLAGLGGNNWILGGDFNVTRWSWEKSHGRPVTRSMRIFNQWIDDYHLID 766
A R DFW EL D+AGL W +GGDFNV R S EK G +T M+ F+++I D LID
Sbjct: 871 ALRKDFWVELSDIAGLSHPRWCVGGDFNVIRRSSEKLGGSRLTPCMKDFDEFIRDCELID 930
Query: 767 TPLQNGCYTWSSCGENHYCSLIDRFLMTDTCLNKFGAARFLRLDRVTSDHYPCTLSFGDL 826
+PL++ YTWS+ EN C +DRFL ++ F + L R TSDH+P L
Sbjct: 931 SPLRSVSYTWSNMQENPVCKRLDRFLYSNEWEQVFPQSLQGVLPRWTSDHWPIVLETNPF 990
Query: 827 SWGPCPFRFENAWLKIDSFRGLMDNWWSENTVQGWPGHGFMMKLKGLKSELRKWN 882
WGP PFRFEN WL+ SF+ WWSE GW GH FM KL+ +K++L++WN
Sbjct: 991 KWGPTPFRFENMWLQHSSFKENFGRWWSEFQGNGWEGHKFMRKLQFVKAKLKEWN 1045
BLAST of Spg038760 vs. ExPASy TrEMBL
Match:
A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)
HSP 1 Score: 335.1 bits (858), Expect = 1.1e-87
Identity = 159/314 (50.64%), Postives = 208/314 (66.24%), Query Frame = 0
Query: 593 MKFLTWNVRGLGSWKKRALIKKTIQQQNPGIVLIQETKKSQICSRIIKSLWSSSHIGWTS 652
MKFLTWNVRGL SWKK ALIK+ I + NP +V++QETK S + I+KSLWS+ I W++
Sbjct: 1 MKFLTWNVRGLDSWKKGALIKQFISRLNPNVVILQETKLSYMDILIVKSLWSAHGINWSA 60
Query: 653 LEFVGASGGILIMWSEPEFSVKETIQGLFTLSIHIFMADNFSFWLSAIYGPSRHADRSDF 712
L+ G + GILI+W++P+ E I+G+F+L+I+ ++D F FW+S IYGPS F
Sbjct: 61 LDASGMASGILILWNDPDLKAAEMIEGVFSLTINFCLSDGFLFWVSGIYGPSTTEFHYLF 120
Query: 713 WNELHDLAGLGGNNWILGGDFNVTRWSWEKSHGRPVTRSMRIFNQWIDDYHLIDTPLQNG 772
W EL DL+ L N+WIL GDFNVTRWSWEKS+GRP+T+SM +FN +I+D LID PL NG
Sbjct: 121 WQELLDLSDLCENHWILAGDFNVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNG 180
Query: 773 CYTWSSCGENHYCSLIDRFLMTDTCLNKFGAARFLRLDRVTSDHYPCTLSFGDLSWGPCP 832
+TWS N SLID FL+T+ C++K G R+ R TSDH+P L FG +WG P
Sbjct: 181 QHTWS---RNTSFSLIDCFLLTNGCIDKLGMPIAKRMTRTTSDHFPILLDFGQNNWGLTP 240
Query: 833 FRFENAWLKIDSFRGLMDNWWSENTVQGWPGHGFMMKLKGLKSELRKWNLSQ-RSSAAQL 892
FRFEN WL +F+ ++ WW + GWPGHG MMKLK LK ++ W R +Q
Sbjct: 241 FRFENMWLSHKTFKPFLETWWGNKPLHGWPGHGLMMKLKSLKYAIKLWITEHFRCIHSQK 300
Query: 893 PSLVTQLKLLDDTE 906
L + LDD E
Sbjct: 301 EDLTNLMNSLDDLE 311
BLAST of Spg038760 vs. ExPASy TrEMBL
Match:
A0A5D3BLV7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005290 PE=4 SV=1)
HSP 1 Score: 293.1 bits (749), Expect = 4.9e-75
Identity = 270/1027 (26.29%), Postives = 428/1027 (41.67%), Query Frame = 0
Query: 17 RSISIDRKNFTIAFDEHFRGSRAKITEYSKYSSHSISLSWKSLKWLASSFNTIAHSPCSH 76
RS ++RK F + D++ + + +TE + + SI +S + L W+ + ++ +P ++
Sbjct: 63 RSCKVERKEFVLHLDKYSKHTHYWLTETGAHKAFSIEVSPRDLDWIRCTLKSLIATPNTN 122
Query: 77 KFFSDLRSDDYTLWIEKLNNKNGFFVEVNQVQNSGSRQRILIPSENNKQGWFSFFSLISE 136
+FF + R + +WI K N G E+ +V + IL+P +K GW SF S+I+
Sbjct: 123 RFFLETRDSEQRIWIRKTRNSKGCTAEIFRVDQKNRKSCILVPEGPDKSGWVSFLSMIT- 182
Query: 137 YPAEAHRQPTKPS--PTSFKDVLQSKPPID-------------------------TITPP 196
P + T+P+ P + D S PPID +
Sbjct: 183 -PKVEVKAKTRPTFLPRTSPDCRLS-PPIDYHKRSYAKAVTEGRPFATSDSSDSYDSSDS 242
Query: 197 SKEPSASTIDEEWNEI----IVLQRSNLHDDWPSIHQSLIAGQAIRCCINPFQANKAMLH 256
S S S D +++ +V+ R HDDW I Q+L N F A KA++H
Sbjct: 243 SHSSSNSFCDSPSSDLLENTVVIVRRFFHDDWHKILQNLRKQTEESFTYNAFHAEKALVH 302
Query: 257 VYDRAIATNLCSHSDWTFLGKHKLKFYPLTTTSTQQDIMTPSYGGWIEISSLPPTLWTER 316
A LC + W+ +GK+ ++F + + PSYGGW +P LW
Sbjct: 303 FSSNIPANLLCQNKGWSTVGKYSVRFEKWSPVYHATPKLIPSYGGWTTFRGIPLHLWNMM 362
Query: 317 IFRFIGDSCGGFVETSNLTNRMIIATEARIKIRPNTSGFIPTAVKLTSDLAG---VELTV 376
F+ IG +C G ++ + T EARIK+R N SGF+P V++ + V++
Sbjct: 363 TFQQIGKACEGLIKVAEETRSAKNLIEARIKVRYNYSGFLPANVRIFDNEGNKFFVQVVT 422
Query: 377 QTKG---ISGNPHRIGLIKDDKPNMEFKDIELKKK----EESEKENSNFNSK----RKSP 436
+G I N G K + F D + + E SE + +F S RKS
Sbjct: 423 HPEGKWLIERNVRLHGTFK-RQAAASFDDFNPESEQFFFEGSEAISPDFLSTSSDGRKSS 482
Query: 437 PANFPK-----ISVPNFITSSAPLLSDKIDKGKNYLPPPPSDSSVSQLPGPT---ILKFG 496
+ P I P+ + L++++ N L + S + L G + +L G
Sbjct: 483 TPDQPSALKSVIIKPDRNATLPSFLNEELVNDSN-LHATANKSKLEILSGISNDGVLDKG 542
Query: 497 ----HIGSTSRNELNVG-SDTKAFLSSPSTNPTAHNSTQDPTSPRP------LDLTIFND 556
I + LN+ S K +SPS N P + P + +
Sbjct: 543 KQKVDIQLQPNSALNLDKSKRKVSFNSPSNKTNIFNPDSAPANHSPSLNSPEKKQKVSRE 602
Query: 557 PLIEGPIDPSQPYQ--NSPSPIDIMPPLQ------------------------QNPTHNT 616
I+ +QP N + I P+Q +P +
Sbjct: 603 RSIKKKSSSTQPNSKANQNKGVFITQPIQIVAHDRDAAKKGLSLTVDLGDLPALDPNKSL 662
Query: 617 SSPNPLEPPQILPYHSPRLSP-VPNMKSP---TPNTFPNCLQHLAPILSKHGLCIMALPT 676
+ + +++ + + P P MK P N+ + K
Sbjct: 663 EDHHNSDNAEVVDITNTEVVPETPEMKMPVNENSNSSSEANYRKPKHVHKRKYYYRKKEE 722
Query: 677 VPKSRGRECYMKFLTWNVRGLGSWKKRALIKKTIQQQNPGIVLIQETKKSQICS------ 736
K E + K L SW K+ +K + + G +Q+ S
Sbjct: 723 KEKDPDSEAFKKQLV-------SWLKKNGLKLSTDTDSSGATTSTNVLLNQMNSGLKITN 782
Query: 737 -RIIKSLWSSSHIGWTSLEFVGASGGILIMWSEPEFSVKETIQGLFTLSIHIFMADNFSF 796
RIIKSLW S+ I W + G+SGGILI+W S+ +GLF+LS + + +N S+
Sbjct: 783 KRIIKSLWPSNSINWIAKNASGSSGGILILWDAQNHSLLSQEEGLFSLSANFLLNNNSSW 842
Query: 797 WLSAIYGPSRHADRSDFWNELHDLAGLGGNNWILGGDFNVTRWSWEKSHGRPVTRSMRIF 856
WL+ +YGP + +R FW ELH+L L WILGGD NV R E + + + R+
Sbjct: 843 WLTGLYGPVKRRERIHFWAELHNLQHLNSFPWILGGDLNVIRMREESTSVLSSSHNSRML 902
Query: 857 NQWIDDYHLIDTPLQNGCYTWSSCGENHYCSLIDRFLMTDTCLNKFGAARFLRLDRVTSD 916
N +I + LID PL N +TWS+ S IDRFL + N F L R TSD
Sbjct: 903 NNFISNNLLIDPPLTNNRFTWSNLRNPPTFSRIDRFLYNSSWENLFSPHTTRTLPRSTSD 962
Query: 917 HYP--CTLSFGDLSWGPCPFRFENAWLKIDSFRGLMDNWWSENTVQGWPGHGFMMKLKGL 933
H+P C S LSWGP PFR + L F+ M WW + G+PG F+ +LK L
Sbjct: 963 HFPLVCEDSNPKLSWGPIPFRLNSITLSDPEFKRNMGRWWENSIQAGYPGFSFIQRLKSL 1022
BLAST of Spg038760 vs. ExPASy TrEMBL
Match:
A0A438JQQ0 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_64 PE=4 SV=1)
HSP 1 Score: 277.7 bits (709), Expect = 2.1e-70
Identity = 133/293 (45.39%), Postives = 181/293 (61.77%), Query Frame = 0
Query: 589 RECYMKFLTWNVRGLGSWKKRALIKKTIQQQNPGIVLIQETKKSQICSRIIKSLWSSSHI 648
R +MK ++WN RGLGS KKR ++K + + P +V+IQETKK + R++ S+WS +
Sbjct: 54 RVFHMKIISWNTRGLGSKKKRRVVKNFLSSEKPDVVMIQETKKEECDRRLVGSVWSVRNK 113
Query: 649 GWTSLEFVGASGGILIMWSEPEFSVKETIQGLFTLSIHIFMADNFSFWLSAIYGPSRHAD 708
W +L GASGGILI+W + +E + G F++SI M + S WLSA+YGP+ A
Sbjct: 114 DWAALPASGASGGILIIWDSKKLRREEVVLGSFSVSIKFAMDECESLWLSAVYGPNNSAL 173
Query: 709 RSDFWNELHDLAGLGGNNWILGGDFNVTRWSWEKSHGRPVTRSMRIFNQWIDDYHLIDTP 768
R DFW EL D+AGL W +GGDFNV R S EK G +T M+ F+++I D LID+P
Sbjct: 174 RKDFWVELSDIAGLSHPRWCVGGDFNVIRRSSEKLGGSRLTPCMKDFDEFIRDCELIDSP 233
Query: 769 LQNGCYTWSSCGENHYCSLIDRFLMTDTCLNKFGAARFLRLDRVTSDHYPCTLSFGDLSW 828
L++ YTWS+ EN C +DRFL ++ F + L R TSDH+P L W
Sbjct: 234 LRSASYTWSNMQENPVCKRLDRFLYSNEWEQVFPQSLQGVLPRWTSDHWPIVLETNPFKW 293
Query: 829 GPCPFRFENAWLKIDSFRGLMDNWWSENTVQGWPGHGFMMKLKGLKSELRKWN 882
GP PFRFEN WL+ SF+ WWSE GW GH FM KL+ +K++L++WN
Sbjct: 294 GPTPFRFENMWLQHSSFKENFGRWWSEFQGNGWEGHKFMRKLQFVKAKLKEWN 346
BLAST of Spg038760 vs. ExPASy TrEMBL
Match:
A0A438JQQ0 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_64 PE=4 SV=1)
HSP 1 Score: 101.3 bits (251), Expect = 2.7e-17
Identity = 56/168 (33.33%), Postives = 77/168 (45.83%), Query Frame = 0
Query: 928 DSWIWPLESSNIFSVKSLMEDLVDYSNMANDL-YKAIWTDFYPKKIKIFLWELSHGAINT 987
D W + S +F+VKS L Y K +W P K+K F+W ++H +NT
Sbjct: 1021 DKRSWSISPSGLFTVKSFFLALSQYFESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLNT 1080
Query: 988 VDRLQRRMPHFHLSPSWCIMCAASSEYPGHLFVHCTFASRYWSEILDAFGWSTVFPNCIN 1047
D LQ R PH LSP+ C +C E HLF+HC+ W + V P I+
Sbjct: 1081 NDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSIS 1140
Query: 1048 DVLNLIFVDHPFHGEKK---ILWLALNRVFFWFLWGERNSRIFRDSFS 1092
D + F + G K +LW W +W ERN+RIF D F+
Sbjct: 1141 D---MFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKFA 1185
HSP 2 Score: 275.0 bits (702), Expect = 1.4e-69
Identity = 134/295 (45.42%), Postives = 181/295 (61.36%), Query Frame = 0
Query: 587 RGRECYMKFLTWNVRGLGSWKKRALIKKTIQQQNPGIVLIQETKKSQICSRIIKSLWSSS 646
R R +MK ++WN RGLGS KKR ++K + + P +V+IQETKK + R++ S+WS
Sbjct: 751 RVRLFHMKIISWNTRGLGSKKKRRVVKNFLSSEKPDVVMIQETKKEECDRRLVGSVWSVR 810
Query: 647 HIGWTSLEFVGASGGILIMWSEPEFSVKETIQGLFTLSIHIFMADNFSFWLSAIYGPSRH 706
+ W +L GASGGILI+W + +E + G F++SI M S WLSA+YGP+
Sbjct: 811 NKDWAALPASGASGGILIIWDSIKMRREEVVLGSFSVSIKFAMDGCESLWLSAVYGPNNS 870
Query: 707 ADRSDFWNELHDLAGLGGNNWILGGDFNVTRWSWEKSHGRPVTRSMRIFNQWIDDYHLID 766
A R DFW EL D+AGL W +GGDFNV R S EK G +T M+ F+++I D LID
Sbjct: 871 ALRKDFWVELSDIAGLSHPRWCVGGDFNVIRRSSEKLGGSRLTPCMKDFDEFIRDCELID 930
Query: 767 TPLQNGCYTWSSCGENHYCSLIDRFLMTDTCLNKFGAARFLRLDRVTSDHYPCTLSFGDL 826
+PL++ YTWS+ EN C +DRFL ++ F + L R TSDH+P L
Sbjct: 931 SPLRSVSYTWSNMQENPVCKRLDRFLYSNEWEQVFPQSLQGVLPRWTSDHWPIVLETNPF 990
Query: 827 SWGPCPFRFENAWLKIDSFRGLMDNWWSENTVQGWPGHGFMMKLKGLKSELRKWN 882
WGP PFRFEN WL+ SF+ WWSE GW GH FM KL+ +K++L++WN
Sbjct: 991 KWGPTPFRFENMWLQHSSFKENFGRWWSEFQGNGWEGHKFMRKLQFVKAKLKEWN 1045
BLAST of Spg038760 vs. ExPASy TrEMBL
Match:
A0A5A7TTA1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001820 PE=4 SV=1)
HSP 1 Score: 273.9 bits (699), Expect = 3.1e-69
Identity = 240/939 (25.56%), Postives = 401/939 (42.71%), Query Frame = 0
Query: 13 NHSTRSISIDRKNFTIAFDEHFRGSRAKITEYSKYSSHSISLSWKSLKWLASSFNTIAHS 72
N R S+++K F ++ D+ R S ITE Y S SI+++ SL+WL +F + ++
Sbjct: 5 NQLPRHCSVEKKEFVLSVDKRSRESNLLITEVGPYKSFSIAITPDSLEWLKMTFKALLNT 64
Query: 73 PCSHKFFSDLRSDDYTLWIEKLNNKNGFFVEVNQVQNSGSRQRILIPSENNKQGWFSFFS 132
P + +FF + R D+ LW++ ++N+ G+ E+ +V + G + IL+P +K GW F
Sbjct: 65 PRTTRFFVEKRYVDFCLWVQTIHNRRGYIAEIYRVDDRGRKCCILVPEGLDKTGWALFND 124
Query: 133 LIS-EYPAEAHRQPTK----------PSPTSFKDVLQSKPPIDTITPPSKEPSASTIDE- 192
+++ + ++ PT+ S+ S+ P T S+S+ E
Sbjct: 125 MLTCKKTSDKKETPTRHYYNQDKGKEKIQQSYDSSTDSESPRKTYAEAVSSSSSSSSSES 184
Query: 193 ---EWNEIIVLQRSNLHDDWPSIHQSLIAGQAIR-CCIN--PFQANKAMLHVYDRAIATN 252
+ L+R HDDW I L + C PF A+KA+L + D+ +A
Sbjct: 185 DCSKTKSTSSLKRRCFHDDWAKIIDRLRDQTDKKDSCFRYIPFHADKALLFIKDKELAKL 244
Query: 253 LCSHSDWTFLGKHKLKFYPLTTTSTQQDIMTPSYGGWIEISSLPPTLWTERIFRFIGDSC 312
LC + WT +G +KF + + + PSYGGW +P +W F IG++
Sbjct: 245 LCKNIGWTTVGPFYVKFEKWSKNAHADTKVIPSYGGWTRFRGIPLHIWNLNTFIQIGEAY 304
Query: 313 GGFVETSNLTNRMIIATEARIKIRPNTSGFIPTAVKLTSDLAGVELTVQT----KG---- 372
GGF++ + + + TEA IK++ N +GF+P +++ D G + +QT KG
Sbjct: 305 GGFIDAAPESVNKLELTEALIKVKENYTGFLPAFIQI-HDEEGHDFIIQTVTHPKGKWLR 364
Query: 373 -----ISGNPHRIGLIKDDKPNMEFKDIELKKK----------EESEKENSNFNSKRKSP 432
I G+ + ++ N + ++ E S+K + N+ RK
Sbjct: 365 ERNPSIHGSFTKTAAENFNEFNPYAEQYTFRRNLAVIAKPDLPESSKKGSKQMNNDRKMG 424
Query: 433 PANFPK--ISVPNFITSSAPLLSDKIDKGKNYLPPPPSDSSVSQLPGPTILKFGHIGSTS 492
P K +F+ + SD + + + G I G +
Sbjct: 425 PTKTIKKFNKTVSFLNLNYEGDSDNSNSSEKIQKKDHRSEMTEKKKGKQIC----CGEYN 484
Query: 493 RNELNVGSDTKAFLSSPSTNPTAHNSTQDPTSPRPLDLTIFNDPLIEGPIDPSQPYQNSP 552
+ + + K SSP ++ PT L SP
Sbjct: 485 QKISPINTKRKVSFSSPKNETFLFSAHSAPTKTLKL---------------------GSP 544
Query: 553 SPIDIMPPLQQNPTHNTSSPNPLEPPQILPYHSPRLSPVPNMKSPTPNTFPNC--LQHLA 612
M + PT + + + + + S + PN F L H++
Sbjct: 545 MSYAKMEAKSKRPTQSIKKKVYRVKSRSMERETSQTSRQKDKGKIDPNEFELVVDLGHIS 604
Query: 613 PILSKHGLCIMALPTVPKSRGRECYMKFLTWNVRGLGSWKKRALIKKTIQQQNPGIVLIQ 672
+LS P+ S + ++ + + KK +++N + +
Sbjct: 605 -LLSDTDFSCPESPSYIPSPTSPTESDIVKDSLASMMTCAHEDREKK--KKEN----IRE 664
Query: 673 ETKKSQICSRIIKSLWSSSHIGWTSLEF------VGASGGILIMWSEPEFSV----KETI 732
ET+ ++ + + W + + +F V I I+ P V ++ I
Sbjct: 665 ETEDDEVSFKRKLTDWLKENNLRLAADFNSQFNSVTNDRMISILNGPPNVGVENVSEDVI 724
Query: 733 QGLFTLSIHIFMADNFSFWLSAIYGPSRHADRSDFWNELHDLAGLGGNNWILGGDFNVTR 792
G F++SI + + S+WLSAIYGP++ +R FW EL +L + WILGGDFNV R
Sbjct: 725 DGAFSVSIQVDSNNGASWWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIR 784
Query: 793 WSWEKSHGRPVTRSMRIFNQWIDDYHLIDTPLQNGCYTWSSCGENHYCSLIDRFLMTDTC 852
W E S P + SM+ FN +I + +LID PL N +TWS+ S +DRFL +
Sbjct: 785 WKEETSTKNPASLSMKRFNTFISNCNLIDPPLTNAKFTWSNLRAQATLSRLDRFLFSTHW 844
Query: 853 LNKFGAARFLRLDRVTSDHYPCTLSFGDLSWGPCPFRFENAWLKIDSFRGLMDNWWSENT 884
N F L R TSDH+P L +SWGP PFRF NA+LK ++ ++ WW +
Sbjct: 845 ENIFPGHTSKVLTRTTSDHFPIVLESSSISWGPSPFRFTNAYLKDPDYKKNIEFWWGNTS 904
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022158956.1 | 2.3e-87 | 50.64 | uncharacterized protein LOC111025405 [Momordica charantia] | [more] |
TYJ99315.1 | 1.0e-74 | 26.29 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
RVX11275.1 | 4.4e-70 | 45.39 | LINE-1 retrotransposable element ORF2 protein [Vitis vinifera] | [more] |
RVX11275.1 | 5.7e-17 | 33.33 | LINE-1 retrotransposable element ORF2 protein [Vitis vinifera] | [more] |
CAN69126.1 | 2.9e-69 | 45.42 | hypothetical protein VITISV_008195 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1E2G6 | 1.1e-87 | 50.64 | uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A5D3BLV7 | 4.9e-75 | 26.29 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A438JQQ0 | 2.1e-70 | 45.39 | LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF... | [more] |
A0A438JQQ0 | 2.7e-17 | 33.33 | LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF... | [more] |
A0A5A7TTA1 | 3.1e-69 | 25.56 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
Match Name | E-value | Identity | Description | |