Spg037561 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037561
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Locationscaffold11: 33350567 .. 33352808 (-)
RNA-Seq ExpressionSpg037561
SyntenySpg037561
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCAGACGTTGGCTCAGAAGAAGTGAATATTGGGAGGTCCGATCCAATGGCGCTTGATGAGGATAATATAACTTTCATTGAAAGCTCAAACGAATGGAGTCAAATGCGGGATGACCAGGCTACCCAAATGTTCACTGAGTGAGGACAATCTCAGTGATCCATACATTACGAACTCCTTATATTTACGTTCTTTTGCTTCTGCTGAACTTATGTTATTTTTGGATTTTGAAAAACTTATGCTATGTTCATGTCCTTATTTTATGAAAAACTTCTGTTGAACTTGTGTTATTTTTGGATTTTGAAGTGCGAACTTATTTGCTAAATTTGATTTATGCATTATGCCACTGTGACATTATGGTTACTACTGAGATGAATACGAACTTGTGAACCGTAATAACAAATTATTGTATGCATGTAGGACTATGACAGGTGTTGATAAACAACCAAAACATATATGAACCAAATTCGAGGAGGTTAAATTAGTTGAGTGCCTCGTTGAACTGGTCCATGAGGATGGCTGGAGGGGAGACAACGACACGTTTAGGTCCGATTATTTAGCCCGACTACAATGGATGATGAGGAAAAAACATCTAGGGTGCACTATTGAGTCCACGTCAACAATAGACTACAAAGTAAGAGTTCTGAAACGGCAGTATGAAACAGTCGCCAAGATGTTGGGTTCGAGGTGCAGTGGTTTCGGGTGGAATACGAAGTATAAATGTGTCGAAGTTGAGAAGGAAGTGTTTGACGCGTGGGTCAAGGTAAGGTTATTGTTCACTCATATACAAACTTGTATACCATGTATACTAATAATATAAAAACTTGATGCGCAATTTGCTTAACGCAAGTGTACGGGTCAAGTAATAATATAGTATTTTCGTGATTAAATGAGTGTCGTCCTTTGGATTGGTTTTTAAGCAAATTAAGTACCGTGAATACTTTTGTTCAATTTTATTTAGGTATCAAAACTTAATGTAAAAGATAAATTTAAAGACAAAAGCATAAAATAAAAGGTGGAGACTCAAATGGAAAAACTCTTAGGGAATTGATTTCCTTGATCAGGATTGAAGATTAATTAGTGGAATGATTTTAGTGTGCAATTATTTTACAAGTCAAGGAAACTTTTATCACAATTATCTCTCCCGAGCATAATTGATTCTCATGCATACAATAAACCCAATATCCCTATCTAAGTTTATTAGCATGCAAGACATTATTTGGTTTACTCCTTGTTACACTTCTAAGTAATTCTAAATCCCGTCACAAACTTAGAAATTCTACTTTAGTCATGTAATTAGTAAAGTAAGTCTTAGGCTAAATCCTCTCTCCCGAGTTAGATTCAAAACTCAAATCATTCAATTAGTGATCAAGTAATTGAAAGCATTTAATCATAATTGCATAAATAAAATAAAAGCACATTCATACCAAAATTCAATCCATTAAACTAAACAACTACATCAATCCCTAAGAGAAACAACTAGCAACTCATAGTCTTGCAACTACAAACACTGATTGAAAGAAAAGCCATAAAAACAACAAGAGGTAAGGGAAAGAAAGGGGAAAATCTTGAATCCGTTGAAACCGACACTTCCCCGTCACGATGTCCACGTCTTCAAGCTTGGTTCCCACTCCTTGGCCTTGCTTCAGCTCCCACAGAAGATCTCTAGTCGAAATTAGGGTTAAAATCTAACCAAATGCACTCCCCTAATTCGTAGCACAAAGTGAGGAATATATAGGAAAATTGTCTGTAGCGTCACGACGTTGTCCCTGCTACCGCCAAAAACAGAAAAGAAAAACCAGCGTTGACACGCCCAGAAAGCAGCGTCTCGATGCTAGCTCTCGGGTTTGCCTCAAACTTAAGCCTCCAACTTTGATTCTTTTAGCTTCTTTTGGTCCCGAGCACCCGATCAACTTCCTAATTCAACATTTCCTCCAAGAATTCATTTCCTACAAAATAAACATTAAAGTGCATTAAAATGGCCAAAATTACTCAAAGACTAACTATAATATATCGGGAAACATAGCTTGCTATGCGCGCTATCAGTGGATCAAGGTAAGGTTATTGTTCACTCATATACAAACTTGTATACCATGTATACTAATATCCTCTGGTATATATGCAGTCTCATTTAGCTGCGAAAGGACTCCTGAACAAGTCATTCCCTCACTACGAGGAATTAGCCTTTGTGTTCGCTAAAGATCGAGCTAGCGGGGTTGGGTTGTACCGTACCGACTGA

mRNA sequence

ATGGGTCCAGACGTTGGCTCAGAAGAAGTGAATATTGGGAGGTCCGATCCAATGGCGCTTGATGAGGATAATATAACTTTCATTGAAAGCTCAAACGAATGGAGGTGCACTATTGAGTCCACGTCAACAATAGACTACAAAGTAAGAGTTCTGAAACGGCAGTATGAAACAGTCGCCAAGATGTTGGGTTCGAGGTGCAGTGGTTTCGGGTGGAATACGAAGTATAAATGTGTCGAAGTTGAGAAGGAAGTGTTTGACGCGTGGGTCAAGTCTCATTTAGCTGCGAAAGGACTCCTGAACAAGTCATTCCCTCACTACGAGGAATTAGCCTTTGTGTTCGCTAAAGATCGAGCTAGCGGGGTTGGGTTGTACCGTACCGACTGA

Coding sequence (CDS)

ATGGGTCCAGACGTTGGCTCAGAAGAAGTGAATATTGGGAGGTCCGATCCAATGGCGCTTGATGAGGATAATATAACTTTCATTGAAAGCTCAAACGAATGGAGGTGCACTATTGAGTCCACGTCAACAATAGACTACAAAGTAAGAGTTCTGAAACGGCAGTATGAAACAGTCGCCAAGATGTTGGGTTCGAGGTGCAGTGGTTTCGGGTGGAATACGAAGTATAAATGTGTCGAAGTTGAGAAGGAAGTGTTTGACGCGTGGGTCAAGTCTCATTTAGCTGCGAAAGGACTCCTGAACAAGTCATTCCCTCACTACGAGGAATTAGCCTTTGTGTTCGCTAAAGATCGAGCTAGCGGGGTTGGGTTGTACCGTACCGACTGA

Protein sequence

MGPDVGSEEVNIGRSDPMALDEDNITFIESSNEWRCTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASGVGLYRTD
Homology
[Close]
BLAST of Spg037561 vs. NCBI nr
Match: TYK05687.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-23
Identity = 51/79 (64.56%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 42  STIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNK 101
           STID ++++LKR +  +A+M G  CSGFGWN + KC+ VEKEVFD WVKSH  AKGLLNK
Sbjct: 64  STIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNK 123

Query: 102 SFPHYEELAFVFAKDRASG 121
           SFPHY+EL+++F KDRA G
Sbjct: 124 SFPHYDELSYMFGKDRAMG 142

[Close]
BLAST of Spg037561 vs. NCBI nr
Match: KAA0025858.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-23
Identity = 48/85 (56.47%), Postives = 67/85 (78.82%), Query Frame = 0 

Query: 36  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAA 95
           C + +T+ IDY+++ LKR ++ +A+M G  CSGFGWN + KC+  EKE+FD WV+SH AA
Sbjct: 59  CQVRATTVIDYRIKTLKRTFQAIAEMRGLACSGFGWNDEEKCIVAEKELFDNWVRSHPAA 118

Query: 96  KGLLNKSFPHYEELAFVFAKDRASG 121
           KGLLNK FP+Y+EL +VF +DRA+G
Sbjct: 119 KGLLNKPFPYYDELTYVFGRDRATG 143

[Close]
BLAST of Spg037561 vs. NCBI nr
Match: XP_031742657.1 (uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742659.1 uncharacterized protein LOC116404426 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-23
Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 0 

Query: 36  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAA 95
           C + +T+ IDY+++ LKR Y+ +A+M G  CSGFGWN   KC+  EKE FD WV+SH AA
Sbjct: 59  CNVHATTVIDYRIKTLKRSYQAIAEMRGPSCSGFGWNDDAKCIIAEKEFFDNWVRSHPAA 118

Query: 96  KGLLNKSFPHYEELAFVFAKDRASG 121
           KGLLNK FP+Y++ A+VF KDRA G
Sbjct: 119 KGLLNKPFPYYDKFAYVFGKDRAMG 143

[Close]
BLAST of Spg037561 vs. NCBI nr
Match: KAA0047069.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK05088.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-23
Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 0 

Query: 42  STIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNK 101
           STI+ ++++LKR +  +A+MLG  CSG GWN + KC+  EKEVFD WVKSHLAAKGLLNK
Sbjct: 35  STINSRIKLLKRMFHAIAEMLGPTCSGLGWNDEQKCIIAEKEVFDNWVKSHLAAKGLLNK 94

Query: 102 SFPHYEELAFVFAKDRASG 121
            FPHY+EL++VF KDRA+G
Sbjct: 95  LFPHYDELSYVFDKDRATG 113

[Close]
BLAST of Spg037561 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-23
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 0 

Query: 36  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAA 95
           C+    STID ++++LKR +  + +M G  CSGFGWN + KC+  EKEVFD WV+SH AA
Sbjct: 29  CSNVHASTIDSRIKLLKRMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVRSHPAA 88

Query: 96  KGLLNKSFPHYEELAFVFAKDRASG 121
           KGLLNKSFPHY+EL++VF+KD A+G
Sbjct: 89  KGLLNKSFPHYDELSYVFSKDHATG 113

[Close]
BLAST of Spg037561 vs. ExPASy TrEMBL
Match: A0A5D3C1J4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001630 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.4e-24
Identity = 51/79 (64.56%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 42  STIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNK 101
           STID ++++LKR +  +A+M G  CSGFGWN + KC+ VEKEVFD WVKSH  AKGLLNK
Sbjct: 64  STIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNK 123

Query: 102 SFPHYEELAFVFAKDRASG 121
           SFPHY+EL+++F KDRA G
Sbjct: 124 SFPHYDELSYMFGKDRAMG 142

[Close]
BLAST of Spg037561 vs. ExPASy TrEMBL
Match: A0A5A7SI64 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001320 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.4e-24
Identity = 48/85 (56.47%), Postives = 67/85 (78.82%), Query Frame = 0 

Query: 36  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAA 95
           C + +T+ IDY+++ LKR ++ +A+M G  CSGFGWN + KC+  EKE+FD WV+SH AA
Sbjct: 59  CQVRATTVIDYRIKTLKRTFQAIAEMRGLACSGFGWNDEEKCIVAEKELFDNWVRSHPAA 118

Query: 96  KGLLNKSFPHYEELAFVFAKDRASG 121
           KGLLNK FP+Y+EL +VF +DRA+G
Sbjct: 119 KGLLNKPFPYYDELTYVFGRDRATG 143

[Close]
BLAST of Spg037561 vs. ExPASy TrEMBL
Match: A0A5A7U0R2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00640 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 0 

Query: 42  STIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNK 101
           STI+ ++++LKR +  +A+MLG  CSG GWN + KC+  EKEVFD WVKSHLAAKGLLNK
Sbjct: 35  STINSRIKLLKRMFHAIAEMLGPTCSGLGWNDEQKCIIAEKEVFDNWVKSHLAAKGLLNK 94

Query: 102 SFPHYEELAFVFAKDRASG 121
            FPHY+EL++VF KDRA+G
Sbjct: 95  LFPHYDELSYVFDKDRATG 113

[Close]
BLAST of Spg037561 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 0 

Query: 36  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAA 95
           C+    STID ++++LKR +  + +M G  CSGFGWN + KC+  EKEVFD WV+SH AA
Sbjct: 29  CSNVHASTIDSRIKLLKRMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDDWVRSHPAA 88

Query: 96  KGLLNKSFPHYEELAFVFAKDRASG 121
           KGLLNKSFPHY+EL++VF+KD A+G
Sbjct: 89  KGLLNKSFPHYDELSYVFSKDHATG 113

[Close]
BLAST of Spg037561 vs. ExPASy TrEMBL
Match: A0A5A7V6Q9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00200 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.9e-23
Identity = 48/85 (56.47%), Postives = 67/85 (78.82%), Query Frame = 0 

Query: 36  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAA 95
           C + +T+ ID +++ LKR ++ +A+M G  CSGFGWN + KC+  EKE+FD WV+SH AA
Sbjct: 59  CQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAA 118

Query: 96  KGLLNKSFPHYEELAFVFAKDRASG 121
           KGLLNKSFP+Y+EL +VF +DRA+G
Sbjct: 119 KGLLNKSFPYYDELTYVFGRDRATG 143

[Close]
BLAST of Spg037561 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 21/84 (25.00%), Postives = 43/84 (51.19%), Query Frame = 0 

Query: 29  ESSNEWRCTIESTSTIDY---KVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVF 88
           E  N +    ES   +D    + + L+RQ+  +  +L  R  GF W+ + + V  +  V+
Sbjct: 219 EMVNLFNAKFESNFDVDVLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVW 278

Query: 89  DAWVKSHLAAKGLLNKSFPHYEEL 110
             ++K+H  A+  + +  P+Y++L
Sbjct: 279 QDYIKAHRDARQFMTRPIPYYKDL 300

[Close]
BLAST of Spg037561 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 21/84 (25.00%), Postives = 43/84 (51.19%), Query Frame = 0 

Query: 29  ESSNEWRCTIESTSTIDY---KVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVF 88
           E  N +    ES   +D    + + L+RQ+  +  +L  R  GF W+ + + V  +  V+
Sbjct: 219 EMVNLFNAKFESNFDVDVLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVW 278

Query: 89  DAWVKSHLAAKGLLNKSFPHYEEL 110
             ++K+H  A+  + +  P+Y++L
Sbjct: 279 QDYIKAHRDARQFMTRPIPYYKDL 300

The following BLAST results are available for this feature:
BLAST of Spg037561 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK05687.11.3e-2364.56retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0025858.11.7e-2356.47retrotransposon protein [Cucumis melo var. makuwa][more]
XP_031742657.12.3e-2357.65uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharact... [more]
KAA0047069.12.3e-2364.56retrotransposon protein [Cucumis melo var. makuwa] >TYK05088.1 retrotransposon p... [more]
KAA0048374.12.9e-2358.82retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p... [more]
BLAST of Spg037561 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg037561 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C1J46.4e-2464.56Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SI648.4e-2456.47Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U0R21.1e-2364.56Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TZA51.4e-2358.82Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V6Q91.9e-2356.47Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Spg037561 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G02210.11.1e-0425.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.21.1e-0425.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 36..120
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 36..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037561.1Spg037561.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane