Spg037181 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037181
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein MNN4-like
Locationscaffold5: 23951103 .. 23951716 (+)
RNA-Seq ExpressionSpg037181
SyntenySpg037181
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACCACCCACGACAACACAATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAGGGGTTGGAGATCAACATGGGGAGCATAATTAAGGATGAGATCTTAGCCTGTGGATGGAAAAGGGCAGACAAGCTTTTCTTTGGCTCACTCATCACCAACTCTATCAGACGGTGAAGATTGTGCCAGGCAAGGACGAGGAGCGCCATTTCTTTAAACCAACCATTGACTTGTCCTTGATATGGACGCTTCAGCAGAACAACATCCAGAGGAAGGATAAAGCCTCCACATCATAGGCCACTCCTCAATCAGGGTCGAATGTAACTTCTCCATCGCAGCACACTCCTTTTACAGGGCCTTCACCAGCATCGGAAGCCCTAGGCATGGTCCACCGCCAGTTAGATCAAATCAGGGAGAACCTGAAGTCATACTGGACATATGCCAAGGAGAGGGATGAAGCTATTAGAGAGTTCTATCTCTCTATCGCCCCTAGCATTGCTCTAGTGTTTCCAAATTTCCCTCAGTCACTGCTATCCCAAGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCGGACGAGGATTAA

mRNA sequence

ATGCCAACCACCCACGACAACACAATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAGGGGTTGGAGATCAACATGGGGAGCATAATTAAGGATGAGATCTTAGCCTGGCCTTCACCAGCATCGGAAGCCCTAGGCATGGTCCACCGCCAGTTAGATCAAATCAGGGAGAACCTGAAGTCATACTGGACATATGCCAAGGAGAGGGATGAAGCTATTAGAGAGTTCTATCTCTCTATCGCCCCTAGCATTGCTCTAGTGTTTCCAAATTTCCCTCAGTCACTGCTATCCCAAGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCGGACGAGGATTAA

Coding sequence (CDS)

ATGCCAACCACCCACGACAACACAATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAGGGGTTGGAGATCAACATGGGGAGCATAATTAAGGATGAGATCTTAGCCTGGCCTTCACCAGCATCGGAAGCCCTAGGCATGGTCCACCGCCAGTTAGATCAAATCAGGGAGAACCTGAAGTCATACTGGACATATGCCAAGGAGAGGGATGAAGCTATTAGAGAGTTCTATCTCTCTATCGCCCCTAGCATTGCTCTAGTGTTTCCAAATTTCCCTCAGTCACTGCTATCCCAAGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCGGACGAGGATTAA

Protein sequence

MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAWPSPASEALGMVHRQLDQIRENLKSYWTYAKERDEAIREFYLSIAPSIALVFPNFPQSLLSQEEEDSDEEEDEENEEKESSSDED
Homology
BLAST of Spg037181 vs. NCBI nr
Match: KAA0032726.1 (drebrin-like [Cucumis melo var. makuwa] >TYJ98758.1 drebrin-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-04
Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 0

Query: 1  MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
          MPT HDNTIS+D+++L+YC+M+ L +N+G II + I AW
Sbjct: 1  MPTRHDNTISMDKIVLIYCIMEELPVNVGEIICEHIFAW 39

BLAST of Spg037181 vs. NCBI nr
Match: KAA0042406.1 (hypothetical protein E6C27_scaffold943G00160 [Cucumis melo var. makuwa] >TYK00990.1 hypothetical protein E5676_scaffold602G001850 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 0

Query: 1  MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
          MPT HDNTI VD++ML+YC+M+ L +NMG II +  LAW
Sbjct: 17 MPTRHDNTIFVDQIMLIYCIMEELLVNMGEIICEHDLAW 55

BLAST of Spg037181 vs. NCBI nr
Match: TYK02168.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-04
Identity = 23/57 (40.35%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 1   MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAWPSPASEALGMVHRQLDQI 58
           MPT  D+TIS++R+ML+YC+++ + +N+G II + I+AW      A    H Q+D++
Sbjct: 103 MPTRRDSTISMERIMLIYCIIEEIPVNIGEIISEHIIAWVKHPRRARSFSH-QIDKL 158

BLAST of Spg037181 vs. NCBI nr
Match: KAA0054403.1 (drebrin-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-04
Identity = 20/39 (51.28%), Postives = 33/39 (84.62%), Query Frame = 0

Query: 1   MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
           MPT HDNTIS++R+M++YC+++ L +N+G  I++ I+AW
Sbjct: 63  MPTRHDNTISMERIMMVYCIIEHLLVNIGKTIREHIIAW 101

BLAST of Spg037181 vs. NCBI nr
Match: TYJ96830.1 (drebrin-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-04
Identity = 20/39 (51.28%), Postives = 33/39 (84.62%), Query Frame = 0

Query: 1   MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
           MPT HDNTIS++R+M++YC+++ L +N+G  I++ I+AW
Sbjct: 114 MPTRHDNTISMERIMMVYCIIEHLLVNIGKTIREHIIAW 152

BLAST of Spg037181 vs. ExPASy TrEMBL
Match: A0A5A7SRQ1 (Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00660 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.4e-05
Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 0

Query: 1  MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
          MPT HDNTIS+D+++L+YC+M+ L +N+G II + I AW
Sbjct: 1  MPTRHDNTISMDKIVLIYCIMEELPVNVGEIICEHIFAW 39

BLAST of Spg037181 vs. ExPASy TrEMBL
Match: A0A5A7TKD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001850 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 0

Query: 1  MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
          MPT HDNTI VD++ML+YC+M+ L +NMG II +  LAW
Sbjct: 17 MPTRHDNTIFVDQIMLIYCIMEELLVNMGEIICEHDLAW 55

BLAST of Spg037181 vs. ExPASy TrEMBL
Match: A0A5D3BT56 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00640 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 23/57 (40.35%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 1   MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAWPSPASEALGMVHRQLDQI 58
           MPT  D+TIS++R+ML+YC+++ + +N+G II + I+AW      A    H Q+D++
Sbjct: 103 MPTRRDSTISMERIMLIYCIIEEIPVNIGEIISEHIIAWVKHPRRARSFSH-QIDKL 158

BLAST of Spg037181 vs. ExPASy TrEMBL
Match: A0A5A7UEH4 (Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G001500 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 20/39 (51.28%), Postives = 33/39 (84.62%), Query Frame = 0

Query: 1   MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
           MPT HDNTIS++R+M++YC+++ L +N+G  I++ I+AW
Sbjct: 63  MPTRHDNTISMERIMMVYCIIEHLLVNIGKTIREHIIAW 101

BLAST of Spg037181 vs. ExPASy TrEMBL
Match: A0A5D3BAF4 (Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00250 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 20/39 (51.28%), Postives = 33/39 (84.62%), Query Frame = 0

Query: 1   MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
           MPT HDNTIS++R+M++YC+++ L +N+G  I++ I+AW
Sbjct: 114 MPTRHDNTISMERIMMVYCIIEHLLVNIGKTIREHIIAW 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0032726.11.7e-0456.41drebrin-like [Cucumis melo var. makuwa] >TYJ98758.1 drebrin-like [Cucumis melo v... [more]
KAA0042406.12.3e-0461.54hypothetical protein E6C27_scaffold943G00160 [Cucumis melo var. makuwa] >TYK0099... [more]
TYK02168.13.0e-0440.35protein MNN4-like [Cucumis melo var. makuwa][more]
KAA0054403.15.1e-0451.28drebrin-like [Cucumis melo var. makuwa][more]
TYJ96830.15.1e-0451.28drebrin-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SRQ18.4e-0556.41Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00660 P... [more]
A0A5A7TKD31.1e-0461.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BT561.4e-0440.35Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00... [more]
A0A5A7UEH42.4e-0451.28Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G001500 P... [more]
A0A5D3BAF42.4e-0451.28Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00250 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 98..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037181.1Spg037181.1mRNA