Spg037181 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg037181
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein MNN4-like
Location	scaffold5: 23951103 .. 23951716 (+)
RNA-Seq Expression	Spg037181
Synteny	Spg037181

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAACCACCCACGACAACACAATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAGGGGTTGGAGATCAACATGGGGAGCATAATTAAGGATGAGATCTTAGCCTGTGGATGGAAAAGGGCAGACAAGCTTTTCTTTGGCTCACTCATCACCAACTCTATCAGACGGTGAAGATTGTGCCAGGCAAGGACGAGGAGCGCCATTTCTTTAAACCAACCATTGACTTGTCCTTGATATGGACGCTTCAGCAGAACAACATCCAGAGGAAGGATAAAGCCTCCACATCATAGGCCACTCCTCAATCAGGGTCGAATGTAACTTCTCCATCGCAGCACACTCCTTTTACAGGGCCTTCACCAGCATCGGAAGCCCTAGGCATGGTCCACCGCCAGTTAGATCAAATCAGGGAGAACCTGAAGTCATACTGGACATATGCCAAGGAGAGGGATGAAGCTATTAGAGAGTTCTATCTCTCTATCGCCCCTAGCATTGCTCTAGTGTTTCCAAATTTCCCTCAGTCACTGCTATCCCAAGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCGGACGAGGATTAA

mRNA sequence

ATGCCAACCACCCACGACAACACAATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAGGGGTTGGAGATCAACATGGGGAGCATAATTAAGGATGAGATCTTAGCCTGGCCTTCACCAGCATCGGAAGCCCTAGGCATGGTCCACCGCCAGTTAGATCAAATCAGGGAGAACCTGAAGTCATACTGGACATATGCCAAGGAGAGGGATGAAGCTATTAGAGAGTTCTATCTCTCTATCGCCCCTAGCATTGCTCTAGTGTTTCCAAATTTCCCTCAGTCACTGCTATCCCAAGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCGGACGAGGATTAA

Coding sequence (CDS)

ATGCCAACCACCCACGACAACACAATTTCAGTGGATAGAGTGATGCTACTCTATTGCCTTATGAAGGGGTTGGAGATCAACATGGGGAGCATAATTAAGGATGAGATCTTAGCCTGGCCTTCACCAGCATCGGAAGCCCTAGGCATGGTCCACCGCCAGTTAGATCAAATCAGGGAGAACCTGAAGTCATACTGGACATATGCCAAGGAGAGGGATGAAGCTATTAGAGAGTTCTATCTCTCTATCGCCCCTAGCATTGCTCTAGTGTTTCCAAATTTCCCTCAGTCACTGCTATCCCAAGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGAAGAGAAAGAGAGTTCCTCGGACGAGGATTAA

Protein sequence

MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAWPSPASEALGMVHRQLDQIRENLKSYWTYAKERDEAIREFYLSIAPSIALVFPNFPQSLLSQEEEDSDEEEDEENEEKESSSDED

Homology

[Close]

BLAST of Spg037181 vs. NCBI nr
Match: KAA0032726.1 (drebrin-like [Cucumis melo var. makuwa] >TYJ98758.1 drebrin-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-04
Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
          MPT HDNTIS+D+++L+YC+M+ L +N+G II + I AW
Sbjct: 1  MPTRHDNTISMDKIVLIYCIMEELPVNVGEIICEHIFAW 39

[Close]

BLAST of Spg037181 vs. NCBI nr
Match: KAA0042406.1 (hypothetical protein E6C27_scaffold943G00160 [Cucumis melo var. makuwa] >TYK00990.1 hypothetical protein E5676_scaffold602G001850 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1  MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
          MPT HDNTI VD++ML+YC+M+ L +NMG II +  LAW
Sbjct: 17 MPTRHDNTIFVDQIMLIYCIMEELLVNMGEIICEHDLAW 55

[Close]

BLAST of Spg037181 vs. NCBI nr
Match: TYK02168.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-04
Identity = 23/57 (40.35%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 1   MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAWPSPASEALGMVHRQLDQI 58
           MPT  D+TIS++R+ML+YC+++ + +N+G II + I+AW      A    H Q+D++
Sbjct: 103 MPTRRDSTISMERIMLIYCIIEEIPVNIGEIISEHIIAWVKHPRRARSFSH-QIDKL 158

[Close]

BLAST of Spg037181 vs. NCBI nr
Match: KAA0054403.1 (drebrin-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-04
Identity = 20/39 (51.28%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1   MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
           MPT HDNTIS++R+M++YC+++ L +N+G  I++ I+AW
Sbjct: 63  MPTRHDNTISMERIMMVYCIIEHLLVNIGKTIREHIIAW 101

[Close]

BLAST of Spg037181 vs. NCBI nr
Match: TYJ96830.1 (drebrin-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-04
Identity = 20/39 (51.28%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1   MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
           MPT HDNTIS++R+M++YC+++ L +N+G  I++ I+AW
Sbjct: 114 MPTRHDNTISMERIMMVYCIIEHLLVNIGKTIREHIIAW 152

[Close]

BLAST of Spg037181 vs. ExPASy TrEMBL
Match: A0A5A7SRQ1 (Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00660 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.4e-05
Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
          MPT HDNTIS+D+++L+YC+M+ L +N+G II + I AW
Sbjct: 1  MPTRHDNTISMDKIVLIYCIMEELPVNVGEIICEHIFAW 39

[Close]

BLAST of Spg037181 vs. ExPASy TrEMBL
Match: A0A5A7TKD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001850 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1  MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
          MPT HDNTI VD++ML+YC+M+ L +NMG II +  LAW
Sbjct: 17 MPTRHDNTIFVDQIMLIYCIMEELLVNMGEIICEHDLAW 55

[Close]

BLAST of Spg037181 vs. ExPASy TrEMBL
Match: A0A5D3BT56 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00640 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 23/57 (40.35%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 1   MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAWPSPASEALGMVHRQLDQI 58
           MPT  D+TIS++R+ML+YC+++ + +N+G II + I+AW      A    H Q+D++
Sbjct: 103 MPTRRDSTISMERIMLIYCIIEEIPVNIGEIISEHIIAWVKHPRRARSFSH-QIDKL 158

[Close]

BLAST of Spg037181 vs. ExPASy TrEMBL
Match: A0A5A7UEH4 (Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G001500 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 20/39 (51.28%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1   MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
           MPT HDNTIS++R+M++YC+++ L +N+G  I++ I+AW
Sbjct: 63  MPTRHDNTISMERIMMVYCIIEHLLVNIGKTIREHIIAW 101

[Close]

BLAST of Spg037181 vs. ExPASy TrEMBL
Match: A0A5D3BAF4 (Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00250 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 20/39 (51.28%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1   MPTTHDNTISVDRVMLLYCLMKGLEINMGSIIKDEILAW 40
           MPT HDNTIS++R+M++YC+++ L +N+G  I++ I+AW
Sbjct: 114 MPTRHDNTISMERIMMVYCIIEHLLVNIGKTIREHIIAW 152

The following BLAST results are available for this feature:

BLAST of Spg037181 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032726.1	1.7e-04	56.41	drebrin-like [Cucumis melo var. makuwa] >TYJ98758.1 drebrin-like [Cucumis melo v...	[more]
KAA0042406.1	2.3e-04	61.54	hypothetical protein E6C27_scaffold943G00160 [Cucumis melo var. makuwa] >TYK0099...	[more]
TYK02168.1	3.0e-04	40.35	protein MNN4-like [Cucumis melo var. makuwa]	[more]
KAA0054403.1	5.1e-04	51.28	drebrin-like [Cucumis melo var. makuwa]	[more]
TYJ96830.1	5.1e-04	51.28	drebrin-like [Cucumis melo var. makuwa]	[more]

BLAST of Spg037181 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg037181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRQ1	8.4e-05	56.41	Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00660 P...	[more]
A0A5A7TKD3	1.1e-04	61.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BT56	1.4e-04	40.35	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00...	[more]
A0A5A7UEH4	2.4e-04	51.28	Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G001500 P...	[more]
A0A5D3BAF4	2.4e-04	51.28	Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00250 ...	[more]

BLAST of Spg037181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg037181.1	Spg037181.1	mRNA