Spg035772 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg035772
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DUF4283 domain-containing protein
Location	scaffold5: 39617250 .. 39617723 (-)
RNA-Seq Expression	Spg035772
Synteny	Spg035772

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGATGCTCTATCAATCCGTTCCAGGATAACAAAGCGCTGCTTCACTGCAATGATCAAGGTACAAGGGATAATCTTTGCCGCAATGATGATTGGACTCTAATTGGGGATTGCAAATTGAAGTTCTATCCAATGAATACCCATAACTTCCTCAAAGACAAAATGAAAAGCTCCTCTGGAGGATGGATTAGAATCCTCAATTTACCTCTTCACCTTTGGGAGGACAACATTTTCCAGTATATTGGGAATATATGTGGAGGGTATGAAACCACAGCCAGCCTCACTTCCTGGAAAATAGTCTTTACTGATGCCCGAATAAAGATTAAACGACCCCCGCAAGGTTTTATTCCCTCTTCGATTGTGATTCCAATGATGATTTCGGGAGAAGATGAATTTACCGTGAATCTCGAAGGCGAACAACCACCTTCTAAGATCGGAATATCCATTGACGACCACCGCACGCCGGAATAG

mRNA sequence

ATGGATCGATGCTCTATCAATCCGTTCCAGGATAACAAAGCGCTGCTTCACTGCAATGATCAAGGTACAAGGGATAATCTTTGCCGCAATGATGATTGGACTCTAATTGGGGATTGCAAATTGAAGTTCTATCCAATGAATACCCATAACTTCCTCAAAGACAAAATGAAAAGCTCCTCTGGAGGATGGATTAGAATCCTCAATTTACCTCTTCACCTTTGGGAGGACAACATTTTCCAGTATATTGGGAATATATGTGGAGGGTATGAAACCACAGCCAGCCTCACTTCCTGGAAAATAGTCTTTACTGATGCCCGAATAAAGATTAAACGACCCCCGCAAGGTTTTATTCCCTCTTCGATTGTGATTCCAATGATGATTTCGGGAGAAGATGAATTTACCGTGAATCTCGAAGGCGAACAACCACCTTCTAAGATCGGAATATCCATTGACGACCACCGCACGCCGGAATAG

Coding sequence (CDS)

ATGGATCGATGCTCTATCAATCCGTTCCAGGATAACAAAGCGCTGCTTCACTGCAATGATCAAGGTACAAGGGATAATCTTTGCCGCAATGATGATTGGACTCTAATTGGGGATTGCAAATTGAAGTTCTATCCAATGAATACCCATAACTTCCTCAAAGACAAAATGAAAAGCTCCTCTGGAGGATGGATTAGAATCCTCAATTTACCTCTTCACCTTTGGGAGGACAACATTTTCCAGTATATTGGGAATATATGTGGAGGGTATGAAACCACAGCCAGCCTCACTTCCTGGAAAATAGTCTTTACTGATGCCCGAATAAAGATTAAACGACCCCCGCAAGGTTTTATTCCCTCTTCGATTGTGATTCCAATGATGATTTCGGGAGAAGATGAATTTACCGTGAATCTCGAAGGCGAACAACCACCTTCTAAGATCGGAATATCCATTGACGACCACCGCACGCCGGAATAG

Protein sequence

MDRCSINPFQDNKALLHCNDQGTRDNLCRNDDWTLIGDCKLKFYPMNTHNFLKDKMKSSSGGWIRILNLPLHLWEDNIFQYIGNICGGYETTASLTSWKIVFTDARIKIKRPPQGFIPSSIVIPMMISGEDEFTVNLEGEQPPSKIGISIDDHRTPE

Homology

[Close]

BLAST of Spg035772 vs. NCBI nr
Match: KAA0041398.1 (hypothetical protein E6C27_scaffold206G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 6.2e-15
Identity = 45/116 (38.79%), Postives = 62/116 (53.45%), Query Frame = 0


Query: 8   PFQDNKALLHCNDQGTRDNLCRNDDWTLIGDCKLKFYPMNTHNFLKDKMKSSSGGWIRIL 67
           PF  +KALL   D+     LC+N+ WT +G   +KF   +       K+  S GGW R  
Sbjct: 251 PFHADKALLFIKDKDLAKLLCKNNGWTTVGPFYVKFEKWSKSVHADTKVIPSYGGWTRFR 310

Query: 68  NLPLHLWEDNIFQYIGNICGGYETTASLTSWKIVFTDARIKIKRPPQGFIPSSIVI 124
            +PLH+W  N F +IG  CGG+   A  +  KI  T+A IK+K    GF+P+ I I
Sbjct: 311 GIPLHIWNLNTFIHIGEACGGFIDAAPESVNKIELTEALIKVKENYTGFLPAFIQI 366

[Close]

BLAST of Spg035772 vs. NCBI nr
Match: KAA0056838.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99341.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 8.1e-15
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 5   SINPFQDNKALLHCNDQGTRDNLCRN---DDWTLIGDCKLKF--YPMNTHNFLKDKMKSS 64
           S  PFQ +KA+L  N    +  LC N   + W+ +G+ ++KF  +  N H+F    +  S
Sbjct: 210 SYKPFQADKAILFLNSDHAK-LLCSNKGANGWSTVGNYQVKFESWDSNLHSF--HSVIPS 269

Query: 65  SGGWIRILNLPLHLWEDNIFQYIGNICGGYETTASLTSWKIVFTDARIKIKRPPQGFIPS 124
            GGW+R   +PLHLW  N FQ+IG+ CGG+   A  T       DA+IK++    GF+P+
Sbjct: 270 YGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDVAKETMQMDKLIDAKIKVRYNYTGFVPA 329

[Close]

BLAST of Spg035772 vs. NCBI nr
Match: KAA0044557.1 (hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-14
Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 8   PFQDNKALLHCNDQGTRDNLCRNDDWTLIGDCKLKFYPMNTHNFLKDKMKSSSGGWIRIL 67
           PF  +KALL   D+     LC+N+ WT +G   +KF   +       K+  S GGW R  
Sbjct: 228 PFHADKALLFIKDKDLAKLLCKNNGWTTVGPFYVKFEKWSKSAHADTKVIPSYGGWTRFR 287

Query: 68  NLPLHLWEDNIFQYIGNICGGYETTASLTSWKIVFTDARIKIKRPPQGFIPSSIVI 124
            +PLH+W  N F  IG  CGG+   A  +  KI  T+A IK+K    GF+P+ I I
Sbjct: 288 GIPLHIWNLNTFIQIGEACGGFIDAAPESVNKIELTEALIKVKENYTGFLPAFIQI 343

[Close]

BLAST of Spg035772 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-14
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 5   SINPFQDNKALLHCNDQGTRDNLCRN---DDWTLIGDCKLKF--YPMNTHNFLKDKMKSS 64
           S  PFQ +KA+L  N    +  LC N   + W+ +G+ ++KF  +  N H+F    +  S
Sbjct: 210 SYKPFQADKAILFLNPDHAK-LLCSNKGANGWSTVGNYQVKFESWDSNLHSF--HSVIPS 269

Query: 65  SGGWIRILNLPLHLWEDNIFQYIGNICGGYETTASLTSWKIVFTDARIKIKRPPQGFIPS 124
            GGW+R   +PLHLW  N FQ+IG+ CGG+   A  T       DA+IK++    GF+P+
Sbjct: 270 YGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDVAKETMQMDKLIDAKIKVRYNYIGFVPA 329

[Close]

BLAST of Spg035772 vs. NCBI nr
Match: KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-14
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 5   SINPFQDNKALLHCNDQGTRDNLCRN---DDWTLIGDCKLKF--YPMNTHNFLKDKMKSS 64
           S  PFQ +KA+L  N    +  LC N   + W+ +G+ ++KF  +  N H+F    +  S
Sbjct: 210 SYKPFQADKAILFLNPDHAK-LLCSNKGANGWSTVGNYQVKFESWDSNLHSF--HSVIPS 269

Query: 65  SGGWIRILNLPLHLWEDNIFQYIGNICGGYETTASLTSWKIVFTDARIKIKRPPQGFIPS 124
            GGW+R   +PLHLW  N FQ+IG+ CGG+   A  T       DA+IK++    GF+P+
Sbjct: 270 YGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDVAKETMQMDKLIDAKIKVRYNYIGFVPA 329

[Close]

BLAST of Spg035772 vs. ExPASy TrEMBL
Match: A0A5A7TEP0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00440 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-15
Identity = 45/116 (38.79%), Postives = 62/116 (53.45%), Query Frame = 0


Query: 8   PFQDNKALLHCNDQGTRDNLCRNDDWTLIGDCKLKFYPMNTHNFLKDKMKSSSGGWIRIL 67
           PF  +KALL   D+     LC+N+ WT +G   +KF   +       K+  S GGW R  
Sbjct: 251 PFHADKALLFIKDKDLAKLLCKNNGWTTVGPFYVKFEKWSKSVHADTKVIPSYGGWTRFR 310

Query: 68  NLPLHLWEDNIFQYIGNICGGYETTASLTSWKIVFTDARIKIKRPPQGFIPSSIVI 124
            +PLH+W  N F +IG  CGG+   A  +  KI  T+A IK+K    GF+P+ I I
Sbjct: 311 GIPLHIWNLNTFIHIGEACGGFIDAAPESVNKIELTEALIKVKENYTGFLPAFIQI 366

[Close]

BLAST of Spg035772 vs. ExPASy TrEMBL
Match: A0A5D3BKT8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005570 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.9e-15
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 5   SINPFQDNKALLHCNDQGTRDNLCRN---DDWTLIGDCKLKF--YPMNTHNFLKDKMKSS 64
           S  PFQ +KA+L  N    +  LC N   + W+ +G+ ++KF  +  N H+F    +  S
Sbjct: 210 SYKPFQADKAILFLNSDHAK-LLCSNKGANGWSTVGNYQVKFESWDSNLHSF--HSVIPS 269

Query: 65  SGGWIRILNLPLHLWEDNIFQYIGNICGGYETTASLTSWKIVFTDARIKIKRPPQGFIPS 124
            GGW+R   +PLHLW  N FQ+IG+ CGG+   A  T       DA+IK++    GF+P+
Sbjct: 270 YGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDVAKETMQMDKLIDAKIKVRYNYTGFVPA 329

[Close]

BLAST of Spg035772 vs. ExPASy TrEMBL
Match: A0A5A7TRS9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003060 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.1e-15
Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 8   PFQDNKALLHCNDQGTRDNLCRNDDWTLIGDCKLKFYPMNTHNFLKDKMKSSSGGWIRIL 67
           PF  +KALL   D+     LC+N+ WT +G   +KF   +       K+  S GGW R  
Sbjct: 228 PFHADKALLFIKDKDLAKLLCKNNGWTTVGPFYVKFEKWSKSAHADTKVIPSYGGWTRFR 287

Query: 68  NLPLHLWEDNIFQYIGNICGGYETTASLTSWKIVFTDARIKIKRPPQGFIPSSIVI 124
            +PLH+W  N F  IG  CGG+   A  +  KI  T+A IK+K    GF+P+ I I
Sbjct: 288 GIPLHIWNLNTFIQIGEACGGFIDAAPESVNKIELTEALIKVKENYTGFLPAFIQI 343

[Close]

BLAST of Spg035772 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.8e-15
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 5   SINPFQDNKALLHCNDQGTRDNLCRN---DDWTLIGDCKLKF--YPMNTHNFLKDKMKSS 64
           S  PFQ +KA+L  N    +  LC N   + W+ +G+ ++KF  +  N H+F    +  S
Sbjct: 210 SYKPFQADKAILFLNPDHAK-LLCSNKGANGWSTVGNYQVKFESWDSNLHSF--HSVIPS 269

Query: 65  SGGWIRILNLPLHLWEDNIFQYIGNICGGYETTASLTSWKIVFTDARIKIKRPPQGFIPS 124
            GGW+R   +PLHLW  N FQ+IG+ CGG+   A  T       DA+IK++    GF+P+
Sbjct: 270 YGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDVAKETMQMDKLIDAKIKVRYNYIGFVPA 329

[Close]

BLAST of Spg035772 vs. ExPASy TrEMBL
Match: A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.8e-15
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 5   SINPFQDNKALLHCNDQGTRDNLCRN---DDWTLIGDCKLKF--YPMNTHNFLKDKMKSS 64
           S  PFQ +KA+L  N    +  LC N   + W+ +G+ ++KF  +  N H+F    +  S
Sbjct: 210 SYKPFQADKAILFLNPDHAK-LLCSNKGANGWSTVGNYQVKFESWDSNLHSF--HSVIPS 269

Query: 65  SGGWIRILNLPLHLWEDNIFQYIGNICGGYETTASLTSWKIVFTDARIKIKRPPQGFIPS 124
            GGW+R   +PLHLW  N FQ+IG+ CGG+   A  T       DA+IK++    GF+P+
Sbjct: 270 YGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDVAKETMQMDKLIDAKIKVRYNYIGFVPA 329

The following BLAST results are available for this feature:

BLAST of Spg035772 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041398.1	6.2e-15	38.79	hypothetical protein E6C27_scaffold206G00440 [Cucumis melo var. makuwa]	[more]
KAA0056838.1	8.1e-15	38.71	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993...	[more]
KAA0044557.1	1.1e-14	38.79	hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa]	[more]
TYK08190.1	1.8e-14	38.71	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0057507.1	1.8e-14	38.71	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg035772 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg035772 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TEP0	3.0e-15	38.79	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BKT8	3.9e-15	38.71	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TRS9	5.1e-15	38.79	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7US62	8.8e-15	38.71	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3CA17	8.8e-15	38.71	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Spg035772 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 3..109 e-value: 1.2E-9 score: 37.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg035772.1	Spg035772.1	mRNA