Spg035481 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg035481
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold3: 1711396 .. 1716131 (+)
RNA-Seq Expression	Spg035481
Synteny	Spg035481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTAATGATGGCTAACATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGGTTGAAGAGAGAGATTGTGAAATTGCCTCTCTAAAAAATCACATTGAAAGTCGTGATATCGCTGAATCAAGCCAAACACTCGCTGCAAAGAATAATGACAAAGGGAAGGCTATCATGCAAGAAAACCAGCCTCAGCATTCCACTTCAATTGCTTCGCTGTCCGTTCAGCAACTCCAAGATATGATTATGAGCTCCATTAGAGCTCAATATGGTGGACCTACTCAAAATTCTCTTATGTATTCCAAACCATACACTAAGAGAATTGACAACTTGAGGATGCCTACCGGGTTTCAACCTCCAAAATTTCAACAATTTGATGGAAAGGGGAATCCTAAGCAGCATATTGCTCACTTTGTTGAGACATGCGAGAGTGCTGGGACTCGTGGAGATCTCCTAGTTAAACAATTCGTCCGAACCTTAAAGGGAAATGCCTTTGATTGGTATACTGATTTAGAGCCAGAGATGATCGATAGTTGGGAACAATTCGAAAGAGAGTTCCTAAATCGCTTTTACAGCACAAGGCGAACTGTCAGCATGACAGAACTCACAAATACAAAACAACGGAAAGATGAGCCTGTCATTGACTACATTAATCGTTGGAGAGCTCTGAGTCTTGATTGCAAAGATCGACTCACCGAATTATCTGCTGTGGAAATGTGCATGCAAGGAATGCACTGGGAACTTCTTTATATATTGCAGGGCATAAAACCCCGCACCTTTGAAGAATTAGCAACTCGCGCTCATGACATGGAGCTAAGTATTGCTACTAGAGGGAATAAAGACTTTTCAGTCCCCGATGCGAAAAAGGAGAAGAAAGAAGTGAAGAGCACTGAGAAAATCTTGAAGGGTGCTACAAGGGAATCCATGGTCGTCAATACGACCCCCCTAAAGTTTACCTCTAACAGAAGAGAAAAGAAAATGGAGAAGCGTCAAAATGAAGGCGAGAAATGCCGCCTAACTTTGAAAGAAAGACAAGAAAAAGTCTATCCTTTTCCGGACACTGACGTCCCAGATATGTTAGAACAACTGTTGGAAAATAGACTTATCGAACTCCCTGAATGCAAACGACCCGAAGAGAGGGGAAAAGTAAATGATCCCAATTATTGTAAATATCACCGAGTCGTTAGTCATCCGGTGGAGAAATGTTTTGTGTTAAAGGAGCTAATCTTGAAGTTAGCTCAGGAAAAGAAAATCGAGCTAGATCTTGATGAAGTAGCTCAAACAAATCATGCCGCCATAGTAACTCATCCTAGCGTCCAACCACCTATAAGCTTACCTTATGATCAGAGAGGAAGCTTAATCCAATTTGGTACCTTTGATCCTATTATCGTTTGGTCTCAACCAGAGGCCCTAGGAAATGACTTCCCAGAAAGGGCTCTCTACAATGAGGATGTTCAAGAAAAGATTAGGCAAATTGAAGACGTAGATGGAGGTTGGACACTCGTAACCCGACGGAAGAACCGAAAGCAAAATTGGGTTCAAAAGGAATCTCGTTTGTTTCAAGAACACAAAAGAAAAGGCAAGTCTCGAAGGAAAAATGGGAAGAAGTATATGAGAAGGCTCAAGCCTATCTTAGAGGAAAATGAGGAGCATATCCAACCTCCACATCCAATAACTCTAAAAGAATTCTTCCCAAGAACTTTTCTTGCAGGAATCAATCAAATTGTTACATGTCATGTCGTTGATGTGACAGAAGATGATAATGCTACATCGACTACGTCAGAAGCAATCATGAAGCTGGAAGACCTGCCATCCTTCAATATAGATGATTTACTGTCACTCCCTCAAGAGACCAAAAATACTCTTATTGAGGTGTTAAAGGATTGTAAACCATCTACTTCTCAGACAAATAATGTTGCTCCATGTTGCACATCCATAGCCTTTACCGATGAAGATCTACTACTTGGGTCGAAGCCTCATAATAGGCCTTTGTTTGTCTCGGGCTACATCAGAGAGCAAAAAGTTAGCCGAATTCTCATTGATGATGGTTCTGCTGTTAACATAATGCCCAAGTCTACCATGAACCAACTAGGCATTCTGATGCAAGAATTGTCAAATAGTAAGTTGGTAATTCAAGGATTTAACCAAGGCGGACAACGCGCGATTGGCATGATTCGTCCAGAGCTCATTATTGGAGATTTAAAGGCTAACACCCTATTTCATGTTATAGACTCTAGGACCACCTACAAGTTGTTATTAGGTCGTCCCTGGATTCATGAAAATGGAGTAGTTACTTCCACGCTGCATCAGTGTTTTAAATTCCATCAAGATGGTATCAAGAAGGTTGATGCTGATACCAACCCCTTCACAGAGGCTGAGTCTCATTATGCTGATGCAAAGTTTTACATGAAGAATGACAGTGTGGGGGAAGCTATGCCGTCAGAAGTTCCTTTGATAAAAAGCAGCAACAAACCTGAGCAACAAACAAGCACGAGAAAAGAGCTTAATGAAAAAGCAGAAACTTCTCAGAAAAGCAAGGTACTTTGTTCAGAAGAGAAGAAGACAAACGCTCCTATCTTGCGCTATGTTCCCTTATCTCGACGCAAGAAGGGTGATTCGCCATTTGCAGAATGCTCCAATAATTTAAGAGTTGGCGACATTGAAATTTTGAAAGAGAGTTTTATCACACCTCTTACAAAGATATCCAAACAAGAGGTCAAAGACAAACAAGTAGAAGCAACTCTGCCTGATAAACGAACAAAAGAGGGGTTTGATCCTAAAGCATACAAACTCTTGGCAAAGGCAGGTTATGATTTCACAACGCATACTGAGTTTAAAAGTTTACGAATCTTTGACCAAAGGCCTGAACTTTCCTCAACACAGAAGAAGCTTCAAAAAGAGGGATATGCTATACCCATTTCAAGAGCTGGTCTTGGATATAAATCTCCTGAGCAGGTTCGAATCACAAGAAAAGGGAAAGCGAAAGTTGCAGATACGCTTCACATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAAACATAGATCATAGGACTTCTGCATTTGATCGCATTGGACCGTCGGTTACACGATCCTCGGTTTTTCAAAAACTGAGTACAGCTGCAATAGAAGATGAAAGTCAACATCCAACTCATGGCTCCACACGGCCTTCAACTTTCCAAAGATTAAGTATGGCTTCTGAAGAAAAAGAAAATGTGCATTCAACTCCTACCACACGGCTATCAGCTTTCCAAAGGTTGAGTGTAGCCACAAAAAGAAGTAAAGAACGGTCCCCTATATCAGTTTCTAACATAACAGAAACTCCAATCAAGACAAAGGGTGATGAGAAAATTCGTAGCGTTGTCCCCTCACGAATGAAGAGAAAATTGCTTGTTTCTGTAAATACAGAGGGTTCGTTAAAAATAAAGCGACATGATATTATTATCACAAGACCGAAAGAGAAAAGCCCTGATGATGAAAAAGACACAGTCGTATGCTACCACATCACCACAGAGGAAGAAACGGATCCTGAAACGTCTGAAGAAGATGAAAGTTCCTTAAAAAAAATTCTATGCATGAAATGTAAATACTCCTTATCGTAAGAGTCTAAACTACATGATACTCCTGACCCGCATGAGTTAAAAAGGTGAACGGCACAAAAAAAAAATCAAATTTGTATATTGAACTACGTTATGACTTGATCCCTTCCCACTTGAAGGGTACGTAGGCAACTTAAGAAAAAAAAAAACTTAAGTTCAGTCAAAGCAATAAAAAAATTGTGCCGCAGATAAAGCTTCGAACTTTTATTATGGCATAGACAAACGAAGCATAATGTTTGATACAATGCATTAAAAAAAAAAAAAGTCTTACAGGAGACAAGTCTTAAGGTAAGTAAAAAAGAATTTTGGCTATGAATGGAATCTCAACACTTTTATTTATAGCATGAATGAATAAATGAACAAATATTATTCGACAAACATCAATTGATCAATTAAAAAATGGGACTTTACATCTAATTTGGAAAACAAATGGGGGCAATCAAATCAAATCATCCACTTGAAGTTCCTCAACTCTTCACGTATGTCCTCTAAGTTTTTACGAGCCATGGCTAAAGACTTAACATCTTCATCAGTCATGACAGAGGCACACTCAATATTGGGGATCTCTTCACGGACTTTGGTAACCTCGAGTCTCTGTTGCTTCAAAGTCTTCTCCTCCATCACAAATCAAATTGGAAAGCCTCTCATGCTCGACTAACGTTGTCTCAAGTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCTGTTGTTCGAGTGTGTCATTCAAGGCTTTATTTGTCTCAAAGTACAAGTTCAAGCTTTCCTCGTTTCAAATTGCAGTTCGAGTTTTCCTCGCTTCGAGTACTCCAAGTTCAAGCTTCACTCGTTCCAAGTTCAAGTTCGAGTTTTCATAACTTCAAGTACTCTAAGTTCAAGTTCAGGGTTTCGCTCGTTTCAAGTTCAAGTTTGAGCTTTCCTCATTTCAAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTACTCTAAGTTCAAGTTCGGGGCTTCACTCGTTTCAAGTTCAAGTTCGAGCATTCCTCACTGCAAGTACTTCAAGTTCCAGTTCAATCTTCGCTCATTTCAAGTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTCTAA

mRNA sequence

ATGTCTGTAATGATGGCTAACATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGAGAGGAAGCTTAATCCAATTTGGTACCTTTGATCCTATTATCGTTTGGTCTCAACCAGAGGCCCTAGGAAATGACTTCCCAGAAAGGGCTCTCTACAATGAGGATGTTCAAGAAAAGATTAGGCAAATTGAAGACGTAGATGGAGGTTGGACACTCGTAACCCGACGGAAGAACCGAAAGCAAAATTGGGTTCAAAAGGAATCTCGTTTGTTTCAAGAACACAAAAGAAAAGGCAAGTCTCGAAGGAAAAATGGGAAGAAGTATATGAGAAGGCTCAAGCCTATCTTAGAGGAAAATGAGGAGCATATCCAACCTCCACATCCAATAACTCTAAAAGAATTCTTCCCAAGAACTTTTCTTGCAGGAATCAATCAAATTGTTACATGTCATGTCGTTGATGTGACAGAAGATGATAATGCTACATCGACTACGTCAGAAGCAATCATGAAGCTGGAAGACCTGCCATCCTTCAATATAGATGATTTACTAAAAGAGCTTAATGAAAAAGCAGAAACTTCTCAGAAAAGCAAGAAGAAGCTTCAAAAAGAGGGATATGCTATACCCATTTCAAGAGCTGGTCTTGGATATAAATCTCCTGAGCAGGTTCGAATCACAAGAAAAGGGAAAGCGAAAGTTGCAGATACGCTTCACATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAAACATAGATCATAGGACTTCTGCATTTGATCGCATTGGACCGTCGGTTACACGATCCTCGGTTTTTCAAAAACTGAGTACAGCTGCAATAGAAGATGAAAGTCAACATCCAACTCATGGCTCCACACGGCCTTCAACTTTCCAAAGATTAAGTATGGCTTCTGAAGAAAAAGAAAATGTGCATTCAACTCCTACCACACGGCTATCAGCTTTCCAAAGACTTAACATCTTCATCAGTCATGACAGAGGCACACTCAATATTGGGGATCTCTTCACGGACTTTGGTAACCTCGAGTCTCTGTTGCTTCAAAGTCTTCTCCTCCATCACAAATCAAATTGGAAAGCCTCTCATGCTCGACTAACGTTGTCTCAAGTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCTGTTGTTCGAGGTTTCGCTCGTTTCAAGTTCAAGTTTGAGCTTTCCTCATTTCAAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTACTCTAAGTTCAAGTTCGGGGCTTCACTCGTTTCAAGTTCAAGTTCGAGCATTCCTCACTGCAAGTACTTCAAGTTCCAGTTCAATCTTCGCTCATTTCAAGTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTCTAA

Coding sequence (CDS)

ATGTCTGTAATGATGGCTAACATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGAGAGGAAGCTTAATCCAATTTGGTACCTTTGATCCTATTATCGTTTGGTCTCAACCAGAGGCCCTAGGAAATGACTTCCCAGAAAGGGCTCTCTACAATGAGGATGTTCAAGAAAAGATTAGGCAAATTGAAGACGTAGATGGAGGTTGGACACTCGTAACCCGACGGAAGAACCGAAAGCAAAATTGGGTTCAAAAGGAATCTCGTTTGTTTCAAGAACACAAAAGAAAAGGCAAGTCTCGAAGGAAAAATGGGAAGAAGTATATGAGAAGGCTCAAGCCTATCTTAGAGGAAAATGAGGAGCATATCCAACCTCCACATCCAATAACTCTAAAAGAATTCTTCCCAAGAACTTTTCTTGCAGGAATCAATCAAATTGTTACATGTCATGTCGTTGATGTGACAGAAGATGATAATGCTACATCGACTACGTCAGAAGCAATCATGAAGCTGGAAGACCTGCCATCCTTCAATATAGATGATTTACTAAAAGAGCTTAATGAAAAAGCAGAAACTTCTCAGAAAAGCAAGAAGAAGCTTCAAAAAGAGGGATATGCTATACCCATTTCAAGAGCTGGTCTTGGATATAAATCTCCTGAGCAGGTTCGAATCACAAGAAAAGGGAAAGCGAAAGTTGCAGATACGCTTCACATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAAACATAGATCATAGGACTTCTGCATTTGATCGCATTGGACCGTCGGTTACACGATCCTCGGTTTTTCAAAAACTGAGTACAGCTGCAATAGAAGATGAAAGTCAACATCCAACTCATGGCTCCACACGGCCTTCAACTTTCCAAAGATTAAGTATGGCTTCTGAAGAAAAAGAAAATGTGCATTCAACTCCTACCACACGGCTATCAGCTTTCCAAAGACTTAACATCTTCATCAGTCATGACAGAGGCACACTCAATATTGGGGATCTCTTCACGGACTTTGGTAACCTCGAGTCTCTGTTGCTTCAAAGTCTTCTCCTCCATCACAAATCAAATTGGAAAGCCTCTCATGCTCGACTAACGTTGTCTCAAGTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCTGTTGTTCGAGGTTTCGCTCGTTTCAAGTTCAAGTTTGAGCTTTCCTCATTTCAAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTACTCTAAGTTCAAGTTCGGGGCTTCACTCGTTTCAAGTTCAAGTTCGAGCATTCCTCACTGCAAGTACTTCAAGTTCCAGTTCAATCTTCGCTCATTTCAAGTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTCTAA

Protein sequence

MSVMMANIGTGEERMAELERKVNMLMKARGSLIQFGTFDPIIVWSQPEALGNDFPERALYNEDVQEKIRQIEDVDGGWTLVTRRKNRKQNWVQKESRLFQEHKRKGKSRRKNGKKYMRRLKPILEENEEHIQPPHPITLKEFFPRTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMKLEDLPSFNIDDLLKELNEKAETSQKSKKKLQKEGYAIPISRAGLGYKSPEQVRITRKGKAKVADTLHITVEEIDDSEQAKENIDHRTSAFDRIGPSVTRSSVFQKLSTAAIEDESQHPTHGSTRPSTFQRLSMASEEKENVHSTPTTRLSAFQRLNIFISHDRGTLNIGDLFTDFGNLESLLLQSLLLHHKSNWKASHARLTLSQVWPLIPLSPRMIVQAVVRGFARFKFKFELSSFQVLQVQAFIASSTLSSSSGLHSFQVQVRAFLTASTSSSSSIFAHFKFKFELSSLQVL

Homology

[Close]

BLAST of Spg035481 vs. NCBI nr
Match: KAA0034814.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-30
Identity = 157/613 (25.61%), Postives = 225/613 (36.70%), Query Frame = 0


Query: 26  MKARGSLIQFGTFDPIIVWSQPEAL-GNDFPERALYNEDVQEKIRQIEDVDGGWTLVTRR 85
           + A GSLIQFG+ +P++++S PE L  NDF  RA   +  +E+ +Q+++V+ GWTLV RR
Sbjct: 131 LSAIGSLIQFGSLEPVVIYSSPEDLQNNDF--RA---DGPKEEEKQVDNVEEGWTLVMRR 190

Query: 86  KNRKQNWVQKESRLFQEHKRKGKSRRKNGKKYMRRLKPILEENEEHIQPPHPITLKEFFP 145
           K RKQ++ QKES   + ++ KGKS+R+N +K +R+  PI+EE+E   +P  PI LK+FFP
Sbjct: 191 KKRKQSFSQKESGSCRTYRSKGKSQRRNTRKNLRKFLPIIEESEGLSRPRRPIILKDFFP 250

Query: 146 RTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMKLEDLPSFNIDDLL------------- 205
           + F     +IV+CH   +TE+D   S   E   K EDL    I+DLL             
Sbjct: 251 KNFPM---EIVSCHTTSITEEDAFPSNAMEETPKPEDLLPLGINDLLTLSREVKDTIIEI 310

Query: 206 --------------------------------------------------KELNE----- 265
                                                             ++LN+     
Sbjct: 311 LKNDDVSTIVSSPTEVYDSCCMSISFSDEDLLLGSKLHNRPLYVLGYVREQKLNQILIDN 370

Query: 266 -----------------------------------------------KAE---------- 325
                                                          KAE          
Sbjct: 371 GSVVNILPKSTMNQLGTIRLEIVIGDLQASTIFHVIDSRTTYKMPFTKAEPHLADAKFYT 430

Query: 326 ---------------------------TSQKS---------------------------- 342
                                      TS+KS                            
Sbjct: 431 KSEDVSEIISTEVPVTKGTFKNEQEMITSKKSNKGDAPNGQQNGESTTETKLKAREAEKI 490

[Close]

BLAST of Spg035481 vs. NCBI nr
Match: KAA0052361.1 (uncharacterized protein E6C27_scaffold207G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 7.1e-30
Identity = 80/151 (52.98%), Postives = 112/151 (74.17%), Query Frame = 0


Query: 191 LKELNEKAETSQKSKKKLQKEGYAIPISRAGLGYKSPEQVRITRKGKAKVADTLHITVEE 250
           +K L+E++E S  ++KKLQK+GY+IP SRAG+GY+S E VRIT KGKAKVA+T HITVEE
Sbjct: 352 VKILDERSEFS-PTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEE 411

Query: 251 IDDSEQAKENIDHRTSAFDRIGPSVTRSSVFQKLSTAAIEDESQHPTHGSTRPSTFQRLS 310
             DSE+ K++   R+S FDRI  S  R SVFQ++ST   +D +Q  T  STR S FQRL+
Sbjct: 412 SKDSEEGKKDRSQRSSVFDRIAFSAIRPSVFQRVSTWITKDSNQVSTCSSTRLSAFQRLN 471

Query: 311 MASEEKENVHSTPTTRLSAFQRLNIFISHDR 342
            ++++  ++  TPTTR SAF+RL++ ++ D+
Sbjct: 472 TSAKKVRSISPTPTTRKSAFKRLSVSVTRDQ 501

[Close]

BLAST of Spg035481 vs. NCBI nr
Match: TYJ98225.1 (uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 2.7e-29
Identity = 79/151 (52.32%), Postives = 110/151 (72.85%), Query Frame = 0


Query: 191  LKELNEKAETSQKSKKKLQKEGYAIPISRAGLGYKSPEQVRITRKGKAKVADTLHITVEE 250
            +K  +E+ E S  ++KKLQK+GY+IP SRAG+GY+S E VRIT KGKAKVA+T HITVEE
Sbjct: 1022 VKIFDERPELS-PTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEE 1081

Query: 251  IDDSEQAKENIDHRTSAFDRIGPSVTRSSVFQKLSTAAIEDESQHPTHGSTRPSTFQRLS 310
              DSE+ K+    R+S FDRI  S  R SVFQ++ST+  +D +Q  T  STR S FQRL+
Sbjct: 1082 SKDSEEGKKVRSQRSSVFDRIAFSAIRPSVFQRVSTSIAKDSNQVSTCSSTRLSAFQRLN 1141

Query: 311  MASEEKENVHSTPTTRLSAFQRLNIFISHDR 342
             ++++  ++  TPTTR SAF+RL++ ++ D+
Sbjct: 1142 TSAKKVRSISPTPTTRKSAFKRLSVSVTRDQ 1171

[Close]

BLAST of Spg035481 vs. NCBI nr
Match: TYJ98225.1 (uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 3.6e-26
Identity = 78/176 (44.32%), Postives = 113/176 (64.20%), Query Frame = 0


Query: 26  MKARGSLIQFGTFDPIIVWSQPEAL-GNDFPERALYNEDVQEKIRQIEDVDGGWTLVTRR 85
           + A GSLIQFG+ +P++++S PE L  NDF  RA   +  +E+ +Q+++V+ GWTLVTRR
Sbjct: 506 LSAIGSLIQFGSLEPVVIYSSPEDLQNNDF--RA---DGPKEEEKQVDNVEEGWTLVTRR 565

Query: 86  KNRKQNWVQKESRLFQEHKRKGKSRRKNGKKYMRRLKPILEENEEHIQPPHPITLKEFFP 145
           K RKQ++ QKES  ++ ++ KGKS+R+N +K  R+  PI+EE+E   +P  PI LK+FFP
Sbjct: 566 KKRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPIIEESEGLSRPRRPIILKDFFP 625

Query: 146 RTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMKLEDLPSFNIDDLLKELNEKAET 201
           + F     +IV+CH    TE+D   S   E   K EDL    I+DLL    E  +T
Sbjct: 626 KNFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLPLGINDLLTLSREVKDT 673

HSP 2 Score: 141.0 bits (354), Expect = 2.7e-29
Identity = 79/151 (52.32%), Postives = 110/151 (72.85%), Query Frame = 0


Query: 191  LKELNEKAETSQKSKKKLQKEGYAIPISRAGLGYKSPEQVRITRKGKAKVADTLHITVEE 250
            +K  +E+ E S  ++KKLQK+GY+IP SRAG+GY+S E VRIT KGKAKVA+T HITVEE
Sbjct: 1044 VKIFDERPELS-PTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEE 1103

Query: 251  IDDSEQAKENIDHRTSAFDRIGPSVTRSSVFQKLSTAAIEDESQHPTHGSTRPSTFQRLS 310
              DSE+ K+    R+S FDRI  S  R SVFQ++ST+  +D +Q  T  STR S FQRL+
Sbjct: 1104 SKDSEEGKKVRSQRSSVFDRIAFSAIRPSVFQRVSTSIAKDSNQVSTCSSTRLSAFQRLN 1163

Query: 311  MASEEKENVHSTPTTRLSAFQRLNIFISHDR 342
             ++++  ++  TPTTR SAF+RL++ ++ D+
Sbjct: 1164 TSAKKVRSISPTPTTRKSAFKRLSVSVTRDQ 1193

[Close]

BLAST of Spg035481 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 3.6e-26
Identity = 78/176 (44.32%), Postives = 113/176 (64.20%), Query Frame = 0


Query: 26  MKARGSLIQFGTFDPIIVWSQPEAL-GNDFPERALYNEDVQEKIRQIEDVDGGWTLVTRR 85
           + A GSLIQFG+ +P++++S PE L  NDF  RA   +  +E+ +Q+++V+ GWTLVTRR
Sbjct: 528 LSAIGSLIQFGSLEPVVIYSSPEDLQNNDF--RA---DGPKEEEKQVDNVEEGWTLVTRR 587

Query: 86  KNRKQNWVQKESRLFQEHKRKGKSRRKNGKKYMRRLKPILEENEEHIQPPHPITLKEFFP 145
           K RKQ++ QKES  ++ ++ KGKS+R+N +K  R+  PI+EE+E   +P  PI LK+FFP
Sbjct: 588 KKRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPIIEESEGLSRPRRPIILKDFFP 647

Query: 146 RTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMKLEDLPSFNIDDLLKELNEKAET 201
           + F     +IV+CH    TE+D   S   E   K EDL    I+DLL    E  +T
Sbjct: 648 KNFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLPLGINDLLTLSREVKDT 695

HSP 2 Score: 141.0 bits (354), Expect = 2.7e-29
Identity = 82/176 (46.59%), Postives = 112/176 (63.64%), Query Frame = 0


Query: 26  MKARGSLIQFGTFDPIIVWSQPEAL-GNDFPERALYNEDVQEKIRQIEDVDGGWTLVTRR 85
           + A GSLIQFG+ +P++++  PEAL  NDF       E+     +QI+D D GWTLVTRR
Sbjct: 128 LPAIGSLIQFGSLEPVVIYFSPEALQNNDFQTICSKEEE-----KQIDDADEGWTLVTRR 187

Query: 86  KNRKQNWVQKESRLFQEHKRKGKSRRKNGKKYMRRLKPILEENEEHIQPPHPITLKEFFP 145
           K RKQN+ QKESR ++E++R GKS+R+  +K +R+L PI+EE+EE  +   PITLK+FF 
Sbjct: 188 KKRKQNFSQKESRSYREYRRTGKSQRRKARKNLRKLLPIIEESEELPRSRQPITLKDFFS 247

Query: 146 RTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMKLEDLPSFNIDDLLKELNEKAET 201
             F     +IV CH +  T+DD   S + E   K EDL S  I+DLL    E  +T
Sbjct: 248 ENFSM---EIVPCHTIGTTDDDTFPSNSIEVTPKPEDLLSLGINDLLTLSQEAKDT 295

[Close]

BLAST of Spg035481 vs. ExPASy TrEMBL
Match: A0A5A7SUA1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00480 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.3e-31
Identity = 157/613 (25.61%), Postives = 225/613 (36.70%), Query Frame = 0


Query: 26  MKARGSLIQFGTFDPIIVWSQPEAL-GNDFPERALYNEDVQEKIRQIEDVDGGWTLVTRR 85
           + A GSLIQFG+ +P++++S PE L  NDF  RA   +  +E+ +Q+++V+ GWTLV RR
Sbjct: 131 LSAIGSLIQFGSLEPVVIYSSPEDLQNNDF--RA---DGPKEEEKQVDNVEEGWTLVMRR 190

Query: 86  KNRKQNWVQKESRLFQEHKRKGKSRRKNGKKYMRRLKPILEENEEHIQPPHPITLKEFFP 145
           K RKQ++ QKES   + ++ KGKS+R+N +K +R+  PI+EE+E   +P  PI LK+FFP
Sbjct: 191 KKRKQSFSQKESGSCRTYRSKGKSQRRNTRKNLRKFLPIIEESEGLSRPRRPIILKDFFP 250

Query: 146 RTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMKLEDLPSFNIDDLL------------- 205
           + F     +IV+CH   +TE+D   S   E   K EDL    I+DLL             
Sbjct: 251 KNFPM---EIVSCHTTSITEEDAFPSNAMEETPKPEDLLPLGINDLLTLSREVKDTIIEI 310

Query: 206 --------------------------------------------------KELNE----- 265
                                                             ++LN+     
Sbjct: 311 LKNDDVSTIVSSPTEVYDSCCMSISFSDEDLLLGSKLHNRPLYVLGYVREQKLNQILIDN 370

Query: 266 -----------------------------------------------KAE---------- 325
                                                          KAE          
Sbjct: 371 GSVVNILPKSTMNQLGTIRLEIVIGDLQASTIFHVIDSRTTYKMPFTKAEPHLADAKFYT 430

Query: 326 ---------------------------TSQKS---------------------------- 342
                                      TS+KS                            
Sbjct: 431 KSEDVSEIISTEVPVTKGTFKNEQEMITSKKSNKGDAPNGQQNGESTTETKLKAREAEKI 490

[Close]

BLAST of Spg035481 vs. ExPASy TrEMBL
Match: A0A5A7UFR3 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002040 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-30
Identity = 80/151 (52.98%), Postives = 112/151 (74.17%), Query Frame = 0


Query: 191 LKELNEKAETSQKSKKKLQKEGYAIPISRAGLGYKSPEQVRITRKGKAKVADTLHITVEE 250
           +K L+E++E S  ++KKLQK+GY+IP SRAG+GY+S E VRIT KGKAKVA+T HITVEE
Sbjct: 352 VKILDERSEFS-PTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEE 411

Query: 251 IDDSEQAKENIDHRTSAFDRIGPSVTRSSVFQKLSTAAIEDESQHPTHGSTRPSTFQRLS 310
             DSE+ K++   R+S FDRI  S  R SVFQ++ST   +D +Q  T  STR S FQRL+
Sbjct: 412 SKDSEEGKKDRSQRSSVFDRIAFSAIRPSVFQRVSTWITKDSNQVSTCSSTRLSAFQRLN 471

Query: 311 MASEEKENVHSTPTTRLSAFQRLNIFISHDR 342
            ++++  ++  TPTTR SAF+RL++ ++ D+
Sbjct: 472 TSAKKVRSISPTPTTRKSAFKRLSVSVTRDQ 501

[Close]

BLAST of Spg035481 vs. ExPASy TrEMBL
Match: A0A5A7TPD2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00470 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-29
Identity = 82/176 (46.59%), Postives = 112/176 (63.64%), Query Frame = 0


Query: 26  MKARGSLIQFGTFDPIIVWSQPEAL-GNDFPERALYNEDVQEKIRQIEDVDGGWTLVTRR 85
           + A GSLIQFG+ +P++++  PEAL  NDF       E+     +QI+D D GWTLVTRR
Sbjct: 128 LPAIGSLIQFGSLEPVVIYFSPEALQNNDFQTICSKEEE-----KQIDDADEGWTLVTRR 187

Query: 86  KNRKQNWVQKESRLFQEHKRKGKSRRKNGKKYMRRLKPILEENEEHIQPPHPITLKEFFP 145
           K RKQN+ QKESR ++E++R GKS+R+  +K +R+L PI+EE+EE  +   PITLK+FF 
Sbjct: 188 KKRKQNFSQKESRSYREYRRTGKSQRRKARKNLRKLLPIIEESEELPRSRQPITLKDFFS 247

Query: 146 RTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMKLEDLPSFNIDDLLKELNEKAET 201
             F     +IV CH +  T+DD   S + E   K EDL S  I+DLL    E  +T
Sbjct: 248 ENFSM---EIVPCHTIGTTDDDTFPSNSIEVTPKPEDLLSLGINDLLTLSQEAKDT 295

[Close]

BLAST of Spg035481 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-29
Identity = 79/151 (52.32%), Postives = 110/151 (72.85%), Query Frame = 0


Query: 191  LKELNEKAETSQKSKKKLQKEGYAIPISRAGLGYKSPEQVRITRKGKAKVADTLHITVEE 250
            +K  +E+ E S  ++KKLQK+GY+IP SRAG+GY+S E VRIT KGKAKVA+T HITVEE
Sbjct: 1044 VKIFDERPELS-PTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEE 1103

Query: 251  IDDSEQAKENIDHRTSAFDRIGPSVTRSSVFQKLSTAAIEDESQHPTHGSTRPSTFQRLS 310
              DSE+ K+    R+S FDRI  S  R SVFQ++ST+  +D +Q  T  STR S FQRL+
Sbjct: 1104 SKDSEEGKKVRSQRSSVFDRIAFSAIRPSVFQRVSTSIAKDSNQVSTCSSTRLSAFQRLN 1163

Query: 311  MASEEKENVHSTPTTRLSAFQRLNIFISHDR 342
             ++++  ++  TPTTR SAF+RL++ ++ D+
Sbjct: 1164 TSAKKVRSISPTPTTRKSAFKRLSVSVTRDQ 1193

[Close]

BLAST of Spg035481 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-26
Identity = 78/176 (44.32%), Postives = 113/176 (64.20%), Query Frame = 0


Query: 26  MKARGSLIQFGTFDPIIVWSQPEAL-GNDFPERALYNEDVQEKIRQIEDVDGGWTLVTRR 85
           + A GSLIQFG+ +P++++S PE L  NDF  RA   +  +E+ +Q+++V+ GWTLVTRR
Sbjct: 528 LSAIGSLIQFGSLEPVVIYSSPEDLQNNDF--RA---DGPKEEEKQVDNVEEGWTLVTRR 587

Query: 86  KNRKQNWVQKESRLFQEHKRKGKSRRKNGKKYMRRLKPILEENEEHIQPPHPITLKEFFP 145
           K RKQ++ QKES  ++ ++ KGKS+R+N +K  R+  PI+EE+E   +P  PI LK+FFP
Sbjct: 588 KKRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPIIEESEGLSRPRRPIILKDFFP 647

Query: 146 RTFLAGINQIVTCHVVDVTEDDNATSTTSEAIMKLEDLPSFNIDDLLKELNEKAET 201
           + F     +IV+CH    TE+D   S   E   K EDL    I+DLL    E  +T
Sbjct: 648 KNFPM---EIVSCHTTSTTEEDACPSNAMEETPKPEDLLPLGINDLLTLSREVKDT 695

HSP 2 Score: 141.0 bits (354), Expect = 1.3e-29
Identity = 79/151 (52.32%), Postives = 110/151 (72.85%), Query Frame = 0


Query: 191  LKELNEKAETSQKSKKKLQKEGYAIPISRAGLGYKSPEQVRITRKGKAKVADTLHITVEE 250
            +K  +E+ E S  ++KKLQK+GY+IP SRAG+GY+S E VRIT KGKAKVA+T HITVEE
Sbjct: 1022 VKIFDERPELS-PTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEE 1081

Query: 251  IDDSEQAKENIDHRTSAFDRIGPSVTRSSVFQKLSTAAIEDESQHPTHGSTRPSTFQRLS 310
              DSE+ K+    R+S FDRI  S  R SVFQ++ST+  +D +Q  T  STR S FQRL+
Sbjct: 1082 SKDSEEGKKVRSQRSSVFDRIAFSAIRPSVFQRVSTSIAKDSNQVSTCSSTRLSAFQRLN 1141

Query: 311  MASEEKENVHSTPTTRLSAFQRLNIFISHDR 342
             ++++  ++  TPTTR SAF+RL++ ++ D+
Sbjct: 1142 TSAKKVRSISPTPTTRKSAFKRLSVSVTRDQ 1171

The following BLAST results are available for this feature:

BLAST of Spg035481 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034814.1	1.1e-30	25.61	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0052361.1	7.1e-30	52.98	uncharacterized protein E6C27_scaffold207G002040 [Cucumis melo var. makuwa]	[more]
TYJ98225.1	2.7e-29	52.32	uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]	[more]
TYJ98225.1	3.6e-26	44.32	uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]	[more]
KAA0047477.1	3.6e-26	44.32	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]

BLAST of Spg035481 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg035481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUA1	5.3e-31	25.61	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UFR3	3.4e-30	52.98	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TPD2	1.3e-29	46.59	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TZU9	1.3e-29	52.32	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7TZU9	1.8e-26	44.32	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]

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BLAST of Spg035481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 187..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg035481.1	Spg035481.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding