Spg035213 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg035213
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC111022007
Locationscaffold4: 23545717 .. 23546692 (+)
RNA-Seq ExpressionSpg035213
SyntenySpg035213
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATTCGAGTGGAAGCTCACCCAGAAGCTCAGACCCGACTGGCTATTATTAAAAAGCGGGTTTTGACGTGTGAAAAGACATTCTCCACGAAGACATGTCCTCTCCCAACATTCATCGAGGATATTTTACGCAGGTATGGCTAGGAGCAGCTACGGAAGGAGCCAAAGGCTGCATCTATACCACTGCTTTTAGCATTCTATGCGCAACTAGGGGAAGAGATGCAGACGACCATGCTTCTACGGGGTCCGGTGGTGGACTTTTCAGTAAGGCAGATCAATTAGATTTTTTGACTGCCATCCCTCAAATACCCAGCTGGCAACAAGGCCATTGAGGAACCAACAGATGAGCAGAGGCCCTTCAAATAGTGGCCCACGAGGGAGTTAAGTGGCAGGAGTCCAAAACTGGAGTCAGGACTCTACTGTCAGGAGATTTAAAGCCAGAAGCAACTGTCTGGCTATACGTGATCAAGAATAGGATAATGCCAACAACACATGACACCACCACATCTCAAGAACGTGTCATGTTGTTGTACAGCATGCACAAGGGATTGGATTTGAACCTTGGACGAATCATATGGATGGAGATCCTCTCTTGTGGGCACAAAAATGTGGGAAGGCTATTCTTCCCAACCTTGGTCACTAAGATATACAGACTTGCAGGAATAGAGCCTAAGGAAAAATAATAGAAAAAGTCACCTGAACTTCGATTGACTTGAGCTTAATCAACAAGCTCATAGCCAATTCCAAGCAAAAGGTGACTTCCCCTAAAAAGAAGGCTCAAGCAGCCTCTTCTGCAGCTCAACACTCAAAATCTCCTAAAGAAGCCACAGCCGTAGCGGGCGATGCGATCGCAAAATCATCACAGAATTTACCAGATGCGACCACAAGTCAACAGCAACCTCCAGTCCCTCAACCACAGACTGAAAATGATTTGGTGGTGTTAAGGAGAGACTTGGAGAAGATGAGGAGCTAG

mRNA sequence

ATGGAAATTCGAGTGGAAGCTCACCCAGAAGCTCAGACCCGACTGGCTATTATTAAAAAGCGGGTTTTGACGTGTGAAAAGACATTCTCCACGAAGACATGTCCTCTCCCAACATTCATCGAGGATATTTTACGCAGGACTCTACTGTCAGGAGATTTAAAGCCAGAAGCAACTGTCTGGCTATACGTGATCAAGAATAGGATAATGCCAACAACACATGACACCACCACATCTCAAGAACGTGTCATGTTGTTGTACAGCATGCACAAGGGATTGGATTTGAACCTTGGACGAATCATATGGATGGAGATCCTCTCTTGTGGGCACAAAAATGTGGGAAGGCTATTCTTCCCAACCTTGCAAAAGGTGACTTCCCCTAAAAAGAAGGCTCAAGCAGCCTCTTCTGCAGCTCAACACTCAAAATCTCCTAAAGAAGCCACAGCCGTAGCGGGCGATGCGATCGCAAAATCATCACAGAATTTACCAGATGCGACCACAAGTCAACAGCAACCTCCAGTCCCTCAACCACAGACTGAAAATGATTTGGTGGTGTTAAGGAGAGACTTGGAGAAGATGAGGAGCTAG

Coding sequence (CDS)

ATGGAAATTCGAGTGGAAGCTCACCCAGAAGCTCAGACCCGACTGGCTATTATTAAAAAGCGGGTTTTGACGTGTGAAAAGACATTCTCCACGAAGACATGTCCTCTCCCAACATTCATCGAGGATATTTTACGCAGGACTCTACTGTCAGGAGATTTAAAGCCAGAAGCAACTGTCTGGCTATACGTGATCAAGAATAGGATAATGCCAACAACACATGACACCACCACATCTCAAGAACGTGTCATGTTGTTGTACAGCATGCACAAGGGATTGGATTTGAACCTTGGACGAATCATATGGATGGAGATCCTCTCTTGTGGGCACAAAAATGTGGGAAGGCTATTCTTCCCAACCTTGCAAAAGGTGACTTCCCCTAAAAAGAAGGCTCAAGCAGCCTCTTCTGCAGCTCAACACTCAAAATCTCCTAAAGAAGCCACAGCCGTAGCGGGCGATGCGATCGCAAAATCATCACAGAATTTACCAGATGCGACCACAAGTCAACAGCAACCTCCAGTCCCTCAACCACAGACTGAAAATGATTTGGTGGTGTTAAGGAGAGACTTGGAGAAGATGAGGAGCTAG

Protein sequence

MEIRVEAHPEAQTRLAIIKKRVLTCEKTFSTKTCPLPTFIEDILRRTLLSGDLKPEATVWLYVIKNRIMPTTHDTTTSQERVMLLYSMHKGLDLNLGRIIWMEILSCGHKNVGRLFFPTLQKVTSPKKKAQAASSAAQHSKSPKEATAVAGDAIAKSSQNLPDATTSQQQPPVPQPQTENDLVVLRRDLEKMRS
Homology
BLAST of Spg035213 vs. NCBI nr
Match: PON70375.1 (hypothetical protein PanWU01x14_080440 [Parasponia andersonii])

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-10
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 0

Query: 47  TLLSGDLKPEATVWLYVIKNRIMPTTHDTTTSQERVMLLYSMHKGLDLNLGRIIWMEILS 106
           T L   L P A VW + +K+R++PTTH  T S+E V LLYSM  G  +N+GR+I  EI +
Sbjct: 185 TCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKEHVSLLYSMLTGKSINVGRMIHREICA 244

Query: 107 CGHKNVGRLFFPTLQKVTSPKKKAQA 133
           C  +  G LFFP+L  +TS  +  +A
Sbjct: 245 CAARKSGALFFPSL--ITSMCRNTRA 268

BLAST of Spg035213 vs. NCBI nr
Match: XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])

HSP 1 Score: 71.6 bits (174), Expect = 8.2e-09
Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 0

Query: 46  RTLLSGDLKPEATVWLYVIKNRIMPTTHDTTTSQERVMLLYSMHKGLDLNLGRIIWMEIL 105
           RT  + +LKP A VW+  I+  + PTTHD++ S E+++LLY +  G  +N+G+++   IL
Sbjct: 326 RTYRASNLKPNANVWINFIRYSLNPTTHDSSISVEKIILLYCVVTGRTINVGKVVEKAIL 385

Query: 106 SCGHKNVGRLFFPTL 121
            C  +  G+LFFP+L
Sbjct: 386 YCSKRRQGKLFFPSL 400

BLAST of Spg035213 vs. NCBI nr
Match: PON65869.1 (hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-08
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 0

Query: 49  LSGDLKPEATVWLYVIKNRIMPTTHDTTTSQERVMLLYSMHKGLDLNLGRIIWMEILSCG 108
           L   L P A VW + +K+R++PTTH    S+E V+LLYSM  G  +N+GRII  EI +C 
Sbjct: 4   LRSSLNPPAKVWYHFLKSRLLPTTHGKIVSKECVLLLYSMLTGKSINVGRIIHREICACA 63

Query: 109 HKNVGRLFFPTLQKVTSPKKKAQA---ASSAAQHSKSPKEATAVAGDAIAKSSQNLPDAT 168
            +  G LFFP+L  +T   + A+A    +    H+    +A AVA   IA+     P   
Sbjct: 64  ARKPGALFFPSL--ITRMCRNARAPYLVNEEKLHNTGEIDAIAVA--RIAQEGPAEPSHR 123

Query: 169 TSQQQPPV 174
           +S  +P V
Sbjct: 124 SSSSRPSV 127

BLAST of Spg035213 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-08
Identity = 52/140 (37.14%), Postives = 76/140 (54.29%), Query Frame = 0

Query: 41  EDILRRTLLS--GDLKPEATVWLYVIKNRIMPTTHDTTTSQERVMLLYSMHKGLDLNLGR 100
           E+I  R L +  G L P A VW + +K+R++PTTH  T S++R++LLYSM  G  +N+GR
Sbjct: 27  ENIQNRPLNAEKGALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLYSMLTGKSINVGR 86

Query: 101 IIWMEILSCGHKNVGRLFFPTLQKVTSPKKKAQAASSAAQHSKSPKEATAVAG--DAIAK 160
           +I  EI +C  +  G LFFP+L  +T   + A+A     +      E   + G  DAIA 
Sbjct: 87  MIHSEIRACAARKSGALFFPSL--ITQLCRNARAPFLVNE------EKLHITGEIDAIAV 146

Query: 161 SSQNLPDATTSQQQPPVPQP 177
           +       T   QQP   +P
Sbjct: 147 ARITQEGQTELTQQPSTSRP 158

BLAST of Spg035213 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 0

Query: 47  TLLSGDLKPEATVWLYVIKNRIMPTTHDTTTSQERVMLLYSMHKGLDLNLGRIIWMEILS 106
           T +   L P A VW + +K+R++PTTH  T S++R++LL+SM  G  +N+GR+I  EI +
Sbjct: 164 TCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRA 223

Query: 107 CGHKNVGRLFFPTLQKVTSPKKKAQA---ASSAAQHSKSPKEATAVAGDAIAKSSQNLPD 166
           C  +  G LFFP+L  +T   + A+A    +    H+    +A AV     A+ +Q  P 
Sbjct: 224 CAARKTGALFFPSL--ITRLCRNARAPFLVNEEKLHNTGEIDAIAV-----ARIAQEGP- 283

Query: 167 ATTSQQQPPVPQPQT 179
            T S QQP   +P T
Sbjct: 284 -TESTQQPSSSRPAT 289

BLAST of Spg035213 vs. ExPASy TrEMBL
Match: A0A2P5DAQ2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080440 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 0

Query: 47  TLLSGDLKPEATVWLYVIKNRIMPTTHDTTTSQERVMLLYSMHKGLDLNLGRIIWMEILS 106
           T L   L P A VW + +K+R++PTTH  T S+E V LLYSM  G  +N+GR+I  EI +
Sbjct: 185 TCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKEHVSLLYSMLTGKSINVGRMIHREICA 244

Query: 107 CGHKNVGRLFFPTLQKVTSPKKKAQA 133
           C  +  G LFFP+L  +TS  +  +A
Sbjct: 245 CAARKSGALFFPSL--ITSMCRNTRA 268

BLAST of Spg035213 vs. ExPASy TrEMBL
Match: A0A2P5CEY2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.2e-09
Identity = 52/140 (37.14%), Postives = 76/140 (54.29%), Query Frame = 0

Query: 41  EDILRRTLLS--GDLKPEATVWLYVIKNRIMPTTHDTTTSQERVMLLYSMHKGLDLNLGR 100
           E+I  R L +  G L P A VW + +K+R++PTTH  T S++R++LLYSM  G  +N+GR
Sbjct: 27  ENIQNRPLNAEKGALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLYSMLTGKSINVGR 86

Query: 101 IIWMEILSCGHKNVGRLFFPTLQKVTSPKKKAQAASSAAQHSKSPKEATAVAG--DAIAK 160
           +I  EI +C  +  G LFFP+L  +T   + A+A     +      E   + G  DAIA 
Sbjct: 87  MIHSEIRACAARKSGALFFPSL--ITQLCRNARAPFLVNE------EKLHITGEIDAIAV 146

Query: 161 SSQNLPDATTSQQQPPVPQP 177
           +       T   QQP   +P
Sbjct: 147 ARITQEGQTELTQQPSTSRP 158

BLAST of Spg035213 vs. ExPASy TrEMBL
Match: A0A2P5CXU3 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113580 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.2e-09
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 0

Query: 49  LSGDLKPEATVWLYVIKNRIMPTTHDTTTSQERVMLLYSMHKGLDLNLGRIIWMEILSCG 108
           L   L P A VW + +K+R++PTTH    S+E V+LLYSM  G  +N+GRII  EI +C 
Sbjct: 4   LRSSLNPPAKVWYHFLKSRLLPTTHGKIVSKECVLLLYSMLTGKSINVGRIIHREICACA 63

Query: 109 HKNVGRLFFPTLQKVTSPKKKAQA---ASSAAQHSKSPKEATAVAGDAIAKSSQNLPDAT 168
            +  G LFFP+L  +T   + A+A    +    H+    +A AVA   IA+     P   
Sbjct: 64  ARKPGALFFPSL--ITRMCRNARAPYLVNEEKLHNTGEIDAIAVA--RIAQEGPAEPSHR 123

Query: 169 TSQQQPPV 174
           +S  +P V
Sbjct: 124 SSSSRPSV 127

BLAST of Spg035213 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.9e-09
Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 0

Query: 47  TLLSGDLKPEATVWLYVIKNRIMPTTHDTTTSQERVMLLYSMHKGLDLNLGRIIWMEILS 106
           T +   L P A VW + +K+R++PTTH  T S++R++LL+SM  G  +N+GR+I  EI +
Sbjct: 164 TCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRA 223

Query: 107 CGHKNVGRLFFPTLQKVTSPKKKAQA---ASSAAQHSKSPKEATAVAGDAIAKSSQNLPD 166
           C  +  G LFFP+L  +T   + A+A    +    H+    +A AV     A+ +Q  P 
Sbjct: 224 CAARKTGALFFPSL--ITRLCRNARAPFLVNEEKLHNTGEIDAIAV-----ARIAQEGP- 283

Query: 167 ATTSQQQPPVPQPQT 179
            T S QQP   +P T
Sbjct: 284 -TESTQQPSSSRPAT 289

BLAST of Spg035213 vs. ExPASy TrEMBL
Match: A0A2P5BNT0 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_223230 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-08
Identity = 49/147 (33.33%), Postives = 76/147 (51.70%), Query Frame = 0

Query: 47  TLLSGDLKPEATVWLYVIKNRIMPTTHDTTTSQERVMLLYSMHKGLDLNLGRIIWMEILS 106
           T L   L P A +W + +K+R++PTTH    S+ERV+LLYSM  G  +N+GR+I  EI +
Sbjct: 81  TCLRSSLNPPAKIWYHFLKSRLLPTTHGKIVSKERVLLLYSMLTGKSINMGRMIHREICA 140

Query: 107 CGHKNVGRLFFPTL-QKVTSPKKKAQAASSAAQHSKSPKEATAVAGDAIAKSSQNLPDAT 166
           C  +  G LFFP+L  ++    +     +    H+    +A AVA   IA+     P   
Sbjct: 141 CAARKSGALFFPSLIIRMCRNARAPYLVNEEKLHNTGEIDAIAVA--RIAQEGPAEPSHQ 200

Query: 167 TSQQQP-PVPQPQTENDLVVLRRDLEK 192
            S  +P  V    T ++ +   + LE+
Sbjct: 201 PSSSRPTAVSSSSTTSETLQQLKSLEQ 225

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON70375.12.6e-1045.35hypothetical protein PanWU01x14_080440 [Parasponia andersonii][more]
XP_024971944.18.2e-0941.33uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus][more]
PON65869.11.1e-0838.28hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii][more]
PON59596.11.1e-0837.14hypothetical protein PanWU01x14_158080 [Parasponia andersonii][more]
PON46472.11.8e-0837.04hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5DAQ21.2e-1045.35Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080440 PE... [more]
A0A2P5CEY25.2e-0937.14Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE... [more]
A0A2P5CXU35.2e-0938.28Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5BCG48.9e-0937.04Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5BNT02.0e-0833.33Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..177

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg035213.1Spg035213.1mRNA