Spg034832 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034832
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionreplication protein A 70 kDa DNA-binding subunit B-like
Locationscaffold3: 24350912 .. 24355050 (+)
RNA-Seq ExpressionSpg034832
SyntenySpg034832
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGGTTCCATCACCCAAATGTTGCTGTTTCTTTCTGCTTTCCTTCTTGCCGGCCGACTGAGGAGTGGCGAGGCGAGGCCGCTTCGTTTAAGTTCAGTATCTACCATCGATTTTTGGATTCGGTTATGAGGATTCTCGACTCTGATCGATTTTCGGATTCGATTAAGGGGATTCTCGACTCTGAAGGTTTACCGGAGAAACACAGCCCTGGATATTACGCGACTATGGTCCACCACGATCGGTTAGTTCACGGCCGGCGATTGGCCTCCAGTAATGGTGATACGCCGCTGATGCTGATGTTCGTATATGGCAATGAGACCTACAACATCGCCAGTTTGGGATTTCTGTTTTTGATAAAATTTTATATTATGTATATAAAAGTGGGATTGTATTCCTTAATTTTGTTATTATGGTGGATCTCATTTTCTCTCTATCGCGACAATCATCGGATAGAGTCAAAATTTCTGGGTCTCTGCTCATTGTTCAATCTTTCTTTCTGGGCGCCACTTGTGATGTTTGCACTTATTTCCTTTGTCACAGGATTTTGTATATACGTCTATATTCTTCTGGTAGGAAACGTTTGTGTATCTTATGAACATGATAAGTTTTGAATTTTCGTACAGTTGTAGTACTTGGCTTGCATAGAAACTGATTACTATCAATTGTTTGCTTTTTTTCTCCCACGTAGTTCACAAGATTGGAAGGCGAGGTTAAAGATTCCACCACTTGATACACGCTATAAAACAGAGGTATCCATCTAATGATATTCTTAATGCTTTACAACCAGTTTATAACATAGTGACTGCTCAATGCTGATTGATCCGTTTGTACAGGCATGGAAGATTAGTGTTGTAATGATATTCTGATACTTCAGTTTGTTTTCTGTAAAATTCATGCAAATTGAAAATACTCATGGGACTCTGTATAAGAACATGCCTCATTTTGTTTTTGACCAGTCATTATCAATCTTTTGTTATGTTTAAAACAAATCCATTCTTTAAATTCCAAATTGGTGAGATTGTTTTTTCTAAATAGCATGATTTCAATCCCAAACATTTTCCATGCACTTTAGTTCAACCCAAAATTTCTTATTGGTCAAGAAATTCTACACAATAGCTTTCTAGCTGGGATGTCCACTTCTTCCACTAGAGCATTAATGCTGCCCGTGGCCACAAAGCTGGTGTTCATGTTGAATCTCATATACTTGAGGCCTTCTGGATATATCCAAGACATGAAAGCAATATCTGCTTAATGTCCCAAAAAAAGCGTCACTTGCGAGTTGTAAATTCATGAGATAGATTCTACTCTTTCCCACAGTAAACCCTTCCCCAAAACTAGCTTCTTGAGTTCTATGCATCCAACTACTTGGTATGTCCACCCTCTGAATAAAAAGAAATGGTGAAGGCTGATATCTGTTCCTATGCTTGTCCTTAATTTTGAATATTACTTTGTATTATTTATCCAATATTAGTAATTACTGGTGCGAAGTGCTTTGATTCTTCCGTTGATGAGTTTGACTCTGACAATTCATCTATTGGCTGTCTCTGACGAGTTTTTCAAGCCTCTCAATGTGAGCTACGACCATAGTGCTTTGATGGAAAATGCCGCAAGGAAGGTGGTGGGGCGGATGTCATTCAAAGTGTGTTTTGGAATGGTCATGAACCAACGAAGGGACAGGTTCAGTAAATTTTGCTTGATAACTTGAATATATTTACATTTTTTTCCATTTCAATATAACTTTGATTGGAGATTTTGGATTTCAAGGGTTTTTTTTTTTAGCTCAAACTGCAACTTGCAAGTTGACTTGAGTTGGGTGAATTAGCCTAGATTTGGAGAATAATAAAATTTCATGGTCTTTGATCATCATTAGACACATCCTTTCACCCATTAAATACAAATCATTTTGTTTTCATTTAGCCAAAACTTTCTTTTCAAAATGTCAAATGAGAAGAAGATGGTTTCTTTTATAAGAGAGCTTAAAGTCTTTCAAAGAGAATGGAAGTTAAAAGTTTTCCTTCTTCGTAAAAGAAACTTTGAATCATGTCAGAACGATGATTTGAGAATACAAAAGTTTATTTTCGTCGATGAAGAGGTAGCATTTTTATCTTCATCAAATGTTAGTATTTATCCATTGTTATTCAAATTTAGCAATACAAATCATGGATGATGGTATTTTCTTCTCTATTTTAAATCATGTTCCACACTTTCTACGGTTGCACAGTTTACTAGATTATATCTTACGAGTTTGGTGTGAGAGAAAGAGAAAAAATTTATGATATGGAGACTAATTTGATTGACAATCTTAACTAATATTCTAGGAGTGAAATACACACAGGAGAAATCAAAATTCAAATACTCTATTTTAAAATTTCTTCAATTTGTTGTGTTTACAGTGATAAAAAATTCAAGCAGTGATGTTCAACGAAGTTATAGAAACCATTGGAAATGGTATTCTAAGGAATAAATATTATCTTATTGAAAATGGAAATGTGAAAATTGTGAATTCCAAATATGCAAATGTAAATGAAGAAATTGAAATGGCTTTGTCTACGATGATTGAAGAAATTGAAGAACCATTTCCTCTTCATAATTTGAAGTATAATTTCATCCAGTTTTCTGAGATGGAATCCTTTGTTATGACAGGAAAAACGATAGGTAACATTTTTTTTTAGAAAAAAATTATAGTAAATTTAGATATTATACAATTTTTTTTTTTATGTTAATTCTCTACCTATTTGTGCAGATTTTGTTGGAATTGCGTTCTCTGTGAGATCCATGGTTGAAATAAAAATAAAAACTTCAAACAATAAAACAATGATGAAGAGAGAAATATTTTTGATAGAGCAAAAGTTAGCAACTATTTAAATGCATGTTTTCTTTACAAAAATTAATTATTTCATGGTTGTTTTATGTTAACATGTGGTAATTTATTTTGTAGTTGCAAGCCAATTAAACTGACGCTATGGAACCCAATAATTTTAGCATTCAATCTTAAGGTAGATAGGTATGAAGGTAAGCTTTAAAAATTCAATATAACAGGAAGATATAGCATTAATATAAGGGGGAGAAGAATTTTTAATTTAACTTTTTTTTTTCTTATGTTAGGAGAATTAAGCATGACAACAACAATGACGAGCAACATTTTAATTCAGCCAGATTCAAAAGATCTAAAAGAAAGGTATTCGTCCATATATCTCTGATTTTGAAATTTGCATTTATTCTCAAATTAACCTCTACATTTATACTACTATTTTTTGTAGGAGGAAAATTCTTTTGGATTATACAAACATGTCTACTTTTATTCCTCCCTCTAAAAAAATGGAAAGAGCAAAATTAGTAAGCATCAAAGATATTATTCATGGGTTAGTTGATGATTTATATTGTTCTATCATTGCCTCAATTGTCAAGATAGTTAACAAAGACAATCCATGGTTTGAGAAATGCAAACTTTGCAACCATAGAGTTTACCCCAATGGAAATCAGAAAATGACTCACTGTAACAATTGCAATGATCTTGTCCAATTCATTAGAAAATATATGCTAAAGCTTATAATTTTTGATGGGCAAATGACTGCACATATAACTGCTTTTGAGGCTGCAGAAGTCAGAGTTGGATGTAGTGTTTCCCATATTATGCAACCCAAATTTTGGAGGTAATCATAAGAAGCATGAATTAATTTCTTAAATAAATCCCCTCTAAACTTTTATCTAACATTTTATATTTGTCGTATACCAAACTCAGATGAAGAAGGAGGATTCTAAAATTTATCGCAATTTCATCCTCGCACAAGGAAAAACTTACAAGTTCCTCATTCGCATGGGCAAGAAGTCTGAAGGAGATTGATCAAAGGGGCATTTTGTGGTTCAAGAGATAAATAAAGCACAAGTTGAAGAATGTGACGCTCTTGAAGTTTTACATGTTAAGAAAAAAATTAAAATACAAAGATAGTTTCAAAATCTTTTTACTATATTTTTCACTTTTTTTTTTTTGTTACTTTAAAAGATCCACATGTAATGTTAACTATCATATTTTGACTTTGCTACTTTTAGTTTTTCAGTAGTTTTCTTATTTTAGTGGCATAATCATAAATGATCTTTAGTAGGTATGAAATGCCCAATTATATTGTAAATTTCTTAACG

mRNA sequence

ATGAGTTTGACTCTGACAATTCATCTATTGGCTGTCTCTGACGAGTTTTTCAAGCCTCTCAATGTGAGCTACGACCATAGTGCTTTGATGGAAAATGCCGCAAGGAAGGTGGTGGGGCGGATGTCATTCAAAGTGTGTTTTGGAATGGTCATGAACCAACGAAGGGACAGGAAAAACGATAGTTGCAAGCCAATTAAACTGACGCTATGGAACCCAATAATTTTAGCATTCAATCTTAAGATAGTTAACAAAGACAATCCATGGTTTGAGAAATGCAAACTTTGCAACCATAGAGTTTACCCCAATGGAAATCAGAAAATGACTCACTGTAACAATTGCAATGATCTTGTCCAATTCATTAGAAAATATATGCTAAAGCTTATAATTTTTGATGGGCAAATGACTGCACATATAACTGCTTTTGAGGCTGCAGAAGTCAGAGTTGGATGTAGTATGAAGAAGGAGGATTCTAAAATTTATCGCAATTTCATCCTCGCACAAGGAAAAACTTACAAGTTCCTCATTCGCATGGGCAAGAAGTCTGAAGGAGATTGA

Coding sequence (CDS)

ATGAGTTTGACTCTGACAATTCATCTATTGGCTGTCTCTGACGAGTTTTTCAAGCCTCTCAATGTGAGCTACGACCATAGTGCTTTGATGGAAAATGCCGCAAGGAAGGTGGTGGGGCGGATGTCATTCAAAGTGTGTTTTGGAATGGTCATGAACCAACGAAGGGACAGGAAAAACGATAGTTGCAAGCCAATTAAACTGACGCTATGGAACCCAATAATTTTAGCATTCAATCTTAAGATAGTTAACAAAGACAATCCATGGTTTGAGAAATGCAAACTTTGCAACCATAGAGTTTACCCCAATGGAAATCAGAAAATGACTCACTGTAACAATTGCAATGATCTTGTCCAATTCATTAGAAAATATATGCTAAAGCTTATAATTTTTGATGGGCAAATGACTGCACATATAACTGCTTTTGAGGCTGCAGAAGTCAGAGTTGGATGTAGTATGAAGAAGGAGGATTCTAAAATTTATCGCAATTTCATCCTCGCACAAGGAAAAACTTACAAGTTCCTCATTCGCATGGGCAAGAAGTCTGAAGGAGATTGA

Protein sequence

MSLTLTIHLLAVSDEFFKPLNVSYDHSALMENAARKVVGRMSFKVCFGMVMNQRRDRKNDSCKPIKLTLWNPIILAFNLKIVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGCSMKKEDSKIYRNFILAQGKTYKFLIRMGKKSEGD
Homology
[Close]
BLAST of Spg034832 vs. NCBI nr
Match: XP_016500091.1 (PREDICTED: replication protein A 70 kDa DNA-binding subunit A-like [Nicotiana tabacum])

HSP 1 Score: 81.3 bits (199), Expect = 9.9e-12
Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 0 

Query: 81  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHIT 140
           I+NKD PW+  CK C  +V    N  +  C+ C  + V +  KY+LKL +FD +   ++T
Sbjct: 67  IMNKDEPWYSSCKKCYKKVDVINN--IAKCHRCGVENVDYQEKYILKLEVFDKKERCYVT 126

Query: 141 AFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKTYKFLIRMGKKSEGD 185
            FE+    +GC         S KKE+SK YR  +L++ K + FL+++  K+ GD
Sbjct: 127 LFESTRYLLGCDVTTYIQSISQKKEESKFYRKLVLSREKEFTFLVKIDSKNGGD 178

[Close]
BLAST of Spg034832 vs. NCBI nr
Match: XP_009776017.1 (PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana sylvestris] >XP_016492385.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana tabacum])

HSP 1 Score: 79.3 bits (194), Expect = 3.7e-11
Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 0 

Query: 77  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQ 136
           FN+K   I+N D+PW+  CK C  +V    N  +  C  C   V++  +Y+LKL +FD +
Sbjct: 229 FNVKIKDIINNDDPWYLSCKKCYKKVSLVDN--IATCPRCGSNVEYEERYLLKLELFDEK 288

Query: 137 MTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKTYKFLIRMGKKSEGD 185
              +IT FEA +  +GC         S KKE+SK YR  + ++ K + FL+++  +  GD
Sbjct: 289 EHCYITLFEATKYLLGCDVTTYVRSISQKKEESKYYRKLVSSKDKEFTFLVKLDPRIGGD 346

[Close]
BLAST of Spg034832 vs. NCBI nr
Match: OIT26151.1 (hypothetical protein A4A49_29609 [Nicotiana attenuata])

HSP 1 Score: 78.6 bits (192), Expect = 6.4e-11
Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 0 

Query: 77  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQ 136
           FN K   I+NKD+PW+  C  C  +V    N  +  C  C   V++  +Y+LKL +FD +
Sbjct: 250 FNTKIKYIINKDDPWYLSCNKCYKKVSLVDN--IATCPRCGSNVEYEERYLLKLELFDEK 309

Query: 137 MTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKTYKFLIRMGKKSEGD 185
              +IT FEA +  +GC         S KKE+SK YR  + ++ K + FL+++  +  GD
Sbjct: 310 EHCYITLFEATKYLLGCDVKTYVRSISQKKEESKYYRKLVSSKDKEFTFLVKLDPRIGGD 367

[Close]
BLAST of Spg034832 vs. NCBI nr
Match: XP_016485940.1 (PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana tabacum])

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-11
Identity = 39/114 (34.21%), Postives = 64/114 (56.14%), Query Frame = 0 

Query: 81  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHIT 140
           I+NKD PW+  CK C  +V    N  +  C++C  + V +  +Y+LKL +FD +   ++T
Sbjct: 295 IMNKDEPWYSSCKKCYKKVDVINN--IAKCHHCGVENVDYQERYILKLEVFDKKERCYVT 354

Query: 141 AFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKTYKFLIRMGKKSEGD 185
            FE+    +GC         S KKE+ K YR  +L++ K + FL+++  K+ GD
Sbjct: 355 LFESTRYLLGCDVTTYIQSISQKKEEFKFYRKLVLSREKEFTFLVKIDSKNGGD 406

[Close]
BLAST of Spg034832 vs. NCBI nr
Match: XP_016476407.1 (PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana tabacum])

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-11
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 0 

Query: 81  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHIT 140
           I+NKD PW+  CK C  +V    N  +T C+ C  + V +  +Y+LKL +FD +   ++T
Sbjct: 256 IMNKDEPWYSSCKKCYKKVDVINN--ITKCHRCGVENVDYQERYILKLEVFDKKERYYVT 315

Query: 141 AFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKTYKFLIRMGKKSEGD 185
            FE+    +GC         S  KE+SK YR  +L+  K + FL+++  K+ GD
Sbjct: 316 LFESTRYLLGCDVTTYIQSISQNKEESKFYRKLVLSLEKKFTFLVKIDSKNGGD 367

[Close]
BLAST of Spg034832 vs. ExPASy TrEMBL
Match: A0A1S4CG46 (replication protein A 70 kDa DNA-binding subunit A-like OS=Nicotiana tabacum OX=4097 GN=LOC107818567 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.8e-12
Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 0 

Query: 81  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHIT 140
           I+NKD PW+  CK C  +V    N  +  C+ C  + V +  KY+LKL +FD +   ++T
Sbjct: 67  IMNKDEPWYSSCKKCYKKVDVINN--IAKCHRCGVENVDYQEKYILKLEVFDKKERCYVT 126

Query: 141 AFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKTYKFLIRMGKKSEGD 185
            FE+    +GC         S KKE+SK YR  +L++ K + FL+++  K+ GD
Sbjct: 127 LFESTRYLLGCDVTTYIQSISQKKEESKFYRKLVLSREKEFTFLVKIDSKNGGD 178

[Close]
BLAST of Spg034832 vs. ExPASy TrEMBL
Match: A0A1S4BU38 (replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=4097 GN=LOC107811908 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11
Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 0 

Query: 77  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQ 136
           FN+K   I+N D+PW+  CK C  +V    N  +  C  C   V++  +Y+LKL +FD +
Sbjct: 229 FNVKIKDIINNDDPWYLSCKKCYKKVSLVDN--IATCPRCGSNVEYEERYLLKLELFDEK 288

Query: 137 MTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKTYKFLIRMGKKSEGD 185
              +IT FEA +  +GC         S KKE+SK YR  + ++ K + FL+++  +  GD
Sbjct: 289 EHCYITLFEATKYLLGCDVTTYVRSISQKKEESKYYRKLVSSKDKEFTFLVKLDPRIGGD 346

[Close]
BLAST of Spg034832 vs. ExPASy TrEMBL
Match: A0A1U7W7M5 (replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana sylvestris OX=4096 GN=LOC104225846 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11
Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 0 

Query: 77  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQ 136
           FN+K   I+N D+PW+  CK C  +V    N  +  C  C   V++  +Y+LKL +FD +
Sbjct: 229 FNVKIKDIINNDDPWYLSCKKCYKKVSLVDN--IATCPRCGSNVEYEERYLLKLELFDEK 288

Query: 137 MTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKTYKFLIRMGKKSEGD 185
              +IT FEA +  +GC         S KKE+SK YR  + ++ K + FL+++  +  GD
Sbjct: 289 EHCYITLFEATKYLLGCDVTTYVRSISQKKEESKYYRKLVSSKDKEFTFLVKLDPRIGGD 346

[Close]
BLAST of Spg034832 vs. ExPASy TrEMBL
Match: A0A1J6KWZ0 (Rep_fac-A_C domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_29609 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.1e-11
Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 0 

Query: 77  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQ 136
           FN K   I+NKD+PW+  C  C  +V    N  +  C  C   V++  +Y+LKL +FD +
Sbjct: 250 FNTKIKYIINKDDPWYLSCNKCYKKVSLVDN--IATCPRCGSNVEYEERYLLKLELFDEK 309

Query: 137 MTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKTYKFLIRMGKKSEGD 185
              +IT FEA +  +GC         S KKE+SK YR  + ++ K + FL+++  +  GD
Sbjct: 310 EHCYITLFEATKYLLGCDVKTYVRSISQKKEESKYYRKLVSSKDKEFTFLVKLDPRIGGD 367

[Close]
BLAST of Spg034832 vs. ExPASy TrEMBL
Match: A0A1S4AI89 (replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=4097 GN=LOC107797997 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-11
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 0 

Query: 81  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHIT 140
           I+NKD PW+  CK C  +V    N  +T C+ C  + V +  +Y+LKL +FD +   ++T
Sbjct: 256 IMNKDEPWYSSCKKCYKKVDVINN--ITKCHRCGVENVDYQERYILKLEVFDKKERYYVT 315

Query: 141 AFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKTYKFLIRMGKKSEGD 185
            FE+    +GC         S  KE+SK YR  +L+  K + FL+++  K+ GD
Sbjct: 316 LFESTRYLLGCDVTTYIQSISQNKEESKFYRKLVLSLEKKFTFLVKIDSKNGGD 367

The following BLAST results are available for this feature:
BLAST of Spg034832 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016500091.19.9e-1235.96PREDICTED: replication protein A 70 kDa DNA-binding subunit A-like [Nicotiana ta... [more]
XP_009776017.13.7e-1135.00PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana sy... [more]
OIT26151.16.4e-1135.00hypothetical protein A4A49_29609 [Nicotiana attenuata][more]
XP_016485940.18.3e-1134.21PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana ta... [more]
XP_016476407.18.3e-1135.09PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana ta... [more]
BLAST of Spg034832 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg034832 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4CG464.8e-1235.96replication protein A 70 kDa DNA-binding subunit A-like OS=Nicotiana tabacum OX=... [more]
A0A1S4BU381.8e-1135.00replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=... [more]
A0A1U7W7M51.8e-1135.00replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana sylvestris ... [more]
A0A1J6KWZ03.1e-1135.00Rep_fac-A_C domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_2... [more]
A0A1S4AI894.0e-1135.09replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=... [more]
BLAST of Spg034832 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013955Replication factor A, C-terminalPFAMPF08646Rep_fac-A_Ccoord: 79..153
e-value: 5.1E-8
score: 32.8
NoneNo IPR availableGENE3D2.40.50.140coord: 73..183
e-value: 1.0E-10
score: 43.2
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 80..177

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034832.1Spg034832.1mRNA