Spg034673 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034673
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	NADH-ubiquinone oxidoreductase chain 6
Location	scaffold7: 46305745 .. 46308795 (-)
RNA-Seq Expression	Spg034673
Synteny	Spg034673

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGAGGAACTAAACGAACTTCTTATATCCCTTTTCCACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTAGTGAAACTATTTCTCAAGCAAGGCAGTCGATAAATCATCGAAGGGTTTGTGTGAATAAAGGAATGGTAAGCATTACTCATTTTAAAGTGTCCCACGGTGATGTAATATCTTTTCAAGAAAATGACGCGAGAATCCGTGGTGAAGAAATAAGGAGATCTTTCTATATCGAAATATCAGTTGAAAAAATCATAGGAAAATTCCTGGATCACCCGATAAGAATGTGGAGAAGAACTAAAACAGAATGGTTCCACCTACTCAAAACTAAGAGGGGATGCCGCCTACTACTAAAATCTCGGTTTTTGCAACAGTTGCGTTCTTCTATGCAAGAAGAAGACTTAGAAAGAACAAAGAAGTTTGGATCGGAAAAAGTATGCTTAGGCAGTTGCTTCGCTGAGCACAACAGAATGAAGAGGAATTTGTATCATTTGAAATCCCTATTCTTATCGAATAGAAGGAACGAGAAAAATCGAAATCTTCCTACTCGAACAAGAAGTCCTATAGTTTACAACTCTTCTTTATATAGTAATTCGACCGATTGCTCTGCATCCCCCCATCAGTTTACTATGAAGAGCAAAATCAAAAGGATCGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGTTGTGGTATCGTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAAACATATAAAGATCGGCGTAGTCGCTCATAGGGACATATCTATCCGTCTCGAGTCTCGTCTAGATCGATTCATAGATCGATTTCTATCCATATGTATCGGTATCCCTGTGGATAGAGATAAAGATATGGATCCATCTAGATCTTGATTCACTGTTTCAATTTTTTTGATTGATTGCCTTTTTTTTTACAACAAGTTTGAAATCTTAATGCAGGCAAGGAAAGAGAGTTTTTCTATTATTACTTGCAGGATCGGAGCGTAGACGAGCGAGCAGAGCCCAGGGAACGGGGAAGCCCTTCATAGAGCAGTCGACTAGAAGTAGAAGACTGCTGACCTGAGAGAAGACGGCCTCTCTCGGGAAACATGGCCTAATTTCTCTTCTTTCTTTTTGATTTCGGGTTTCTTTCTTTTTTCAGGGGCCCAGAACGCTTAAAGGTGGGGGAGAAGCAAGCCGAAACTCTGATCGACCTGGAAACATCACAAATTCTCGGCGTCGAGAGAGATTTGAGATTCCGTAAGTAACTCAGCGAGTGCTTTCTAAGAAGGGCTTGACTTGGAAGAAGAAAATGAAATACGAACAACCGCGCTGGTCGTAATAGATCGACTTTCATGCTAGTTCTTGCTCCAGCATGAAAGTTCCATTTCAGGGAAGGACGACGTACCATGATACTTTTCGTTTTGTCTAGCCCTGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATTTGGTACATTCCGTTTTGTTTCCCATCCTAGTCTTTCGCAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATTCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCAGTGAGTGGTATTATTAGACTGATCTTTTGGTGGGAAATGCTCTTCATTTTAGATAATGAAACCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTGAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTTCATCTGGTTTTGGTTTCTAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACTAAGGTGAAAAGACAGGATGTATTCCGACGAAATGCTATTGATTTTAGGAGGACTATAATGAGGAGGACGACAGACCCACTCACGATCTACTAAAGGGAAAGTAGCTTGATTTGTTCGAATCCAAGTCGTGAGATGGCAGTAACGGTGAGGAAAAGGCGTAGGTTGGCTTGGCTTTGGCTTGCTCTGGTCATTATGGCGATTGATGATCCCTGTGCAAACAATAAGTCTGAGTCCCTTAAAAAACTCCCAGTGTATAAAGGAACGTTCGGGCCCCCCAGTCGTCGCAGGGGTCCCTCACTCGGGTATCAGGACGAGAAAGGATATAACGGTGCATTGAAAGATCCAACCGTAAAAAGGGAAACAGAAGGGGGGTTCTAAAAAGGAATCAAAATCGAAATGAAAGCGAAAACTAGTACAACAAGGAAATATGTGCTCCTAACCTTGACTCATGTGGAAATGAGACCAGAGATACAGAAGCATCATGTTACAGATAAGATAAGAGGGGTCTTCGAGAGTCGAGCTATTGTGGTAGTAAAGATCACACGAGGAGAGTGGAGACCATTTTCATGCGGGACTCATAGCAAAAGATGCCTCAAAGCAAACTTCCACGAAAAAGATGAGGGCAGGATTCCCGGAGCGGGAGGGGAGAATGAGGGATGTGAAATTCCACAAAAGGTGGGGAATTGTGTGTGCTTACGTTATGAAGAAAGATGAAGAACCTTGCATATGGAGGCAATATAATATAGATCAATTTAAGGAAATTGCCTTAGCCCGGAATAGGGGAAACCAAAGTTCAGTCTTAGAAAGTCTCGAGGGGTTAGAAGATTGGTACCAAGTGTATAGGGATGACCTTGTGAAAACGAGGATCTTAACCCGAGGATAAAAGAGGTTTTTGAGTCTTTCAAGATATTGCGTGATATAGAAAGCACCGTACCCGAAAGGATACAAAAATATCTGAAGGAGCATGGTGACCCCAAGGAGTACGACATTGAGGAACTAGGTGAGAAGTACCGACGGAAGAGATTGTCGCGGTCTCTTGTCAAATAA

mRNA sequence

ATGCACAGAGGAACTAAACGAACTTCTTATATCCCTTTTCCACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTAGTGAAACTATTTCTCAAGCAAGGCAGTCGATAAATCATCGAAGGGTTTGTGTGAATAAAGGAATGGGGCCCAGAACGCTTAAAGGTGGGGGAGAAGCAAGCCGAAACTCTGATCGACCTGGAAACATCACAAATTCTCGGCGTCGAGAGAGATTTGAGATTCCGGAAGGACGACGTACCATGATACTTTTCGTTTTGTCTAGCCCTGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATTTGGTACATTCCGTTTTGTTTCCCATCCTAGTCTTTCGCAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATTCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCAGTGAGTGGTATTATTAGACTGATCTTTTGGTGGGAAATGCTCTTCATTTTAGATAATGAAACCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTGAGATATACGGTTTATGCCGGAAAGATGGCAGTAACGGTGAGGAAAAGGCGTAGGTTGGCTTGGCTTTGGCTTGCTCTGGTCATTATGGCGATTGATGATCCCTGTGCAAACAATAAGTCTGAGTCCCTTAAAAAACTCCCAGTGTATAAAGGAACGTTCGGGCCCCCCAGTCGTCGCAGGGGTCCCTCACTCGGATCACACGAGGAGAGTGGAGACCATTTTCATGCGGGACTCATAGCAAAAGATGCCTCAAAGCAAACTTCCACGAAAAAGATGAGGGCAGGATTCCCGGAGCGGGAGGGGAGAATGAGGGATGTGAAATTCCACAAAAGGTGGGGAATTGTGTGTGCTTACGTTATGAAGAAAGATGAAGAACCTTGCATATGGAGGCAATATAATATAGATCAATTTAAGGAAATTGCCTTAGCCCGGAATAGGGGAAACCAAAAAAGCACCGTACCCGAAAGGATACAAAAATATCTGAAGGAGCATGGTGACCCCAAGGAGTACGACATTGAGGAACTAGGTGAGAAGTACCGACGGAAGAGATTGTCGCGGTCTCTTGTCAAATAA

Coding sequence (CDS)

ATGCACAGAGGAACTAAACGAACTTCTTATATCCCTTTTCCACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTAGTGAAACTATTTCTCAAGCAAGGCAGTCGATAAATCATCGAAGGGTTTGTGTGAATAAAGGAATGGGGCCCAGAACGCTTAAAGGTGGGGGAGAAGCAAGCCGAAACTCTGATCGACCTGGAAACATCACAAATTCTCGGCGTCGAGAGAGATTTGAGATTCCGGAAGGACGACGTACCATGATACTTTTCGTTTTGTCTAGCCCTGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATTTGGTACATTCCGTTTTGTTTCCCATCCTAGTCTTTCGCAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATTCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCAGTGAGTGGTATTATTAGACTGATCTTTTGGTGGGAAATGCTCTTCATTTTAGATAATGAAACCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTGAGATATACGGTTTATGCCGGAAAGATGGCAGTAACGGTGAGGAAAAGGCGTAGGTTGGCTTGGCTTTGGCTTGCTCTGGTCATTATGGCGATTGATGATCCCTGTGCAAACAATAAGTCTGAGTCCCTTAAAAAACTCCCAGTGTATAAAGGAACGTTCGGGCCCCCCAGTCGTCGCAGGGGTCCCTCACTCGGATCACACGAGGAGAGTGGAGACCATTTTCATGCGGGACTCATAGCAAAAGATGCCTCAAAGCAAACTTCCACGAAAAAGATGAGGGCAGGATTCCCGGAGCGGGAGGGGAGAATGAGGGATGTGAAATTCCACAAAAGGTGGGGAATTGTGTGTGCTTACGTTATGAAGAAAGATGAAGAACCTTGCATATGGAGGCAATATAATATAGATCAATTTAAGGAAATTGCCTTAGCCCGGAATAGGGGAAACCAAAAAAGCACCGTACCCGAAAGGATACAAAAATATCTGAAGGAGCATGGTGACCCCAAGGAGTACGACATTGAGGAACTAGGTGAGAAGTACCGACGGAAGAGATTGTCGCGGTCTCTTGTCAAATAA

Protein sequence

MHRGTKRTSYIPFPLNPETRSDVIPVRLHFSETISQARQSINHRRVCVNKGMGPRTLKGGGEASRNSDRPGNITNSRRRERFEIPEGRRTMILFVLSSPALVSGLMVVRAKNLVHSVLFPILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMIHIQIAEIHEEVLRYLPVSGIIRLIFWWEMLFILDNETIPLLPTQRNTTSLRYTVYAGKMAVTVRKRRRLAWLWLALVIMAIDDPCANNKSESLKKLPVYKGTFGPPSRRRGPSLGSHEESGDHFHAGLIAKDASKQTSTKKMRAGFPEREGRMRDVKFHKRWGIVCAYVMKKDEEPCIWRQYNIDQFKEIALARNRGNQKSTVPERIQKYLKEHGDPKEYDIEELGEKYRRKRLSRSLVK

Homology

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BLAST of Spg034673 vs. NCBI nr
Match: TXG46253.1 (hypothetical protein EZV62_028284 [Acer yangbiense])

HSP 1 Score: 357.8 bits (917), Expect = 1.2e-94
Identity = 194/221 (87.78%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 1   MHRGTKRTSYIPFPLNPETRSDVIPVRLHFSETISQARQSINHRRVCVNKGMGPRTLKGG 60
           MHRGT++TSYIPFPLNPETR DVIPVRLHF ETI QARQ I+HRRVCVN GMGP  LKGG
Sbjct: 335 MHRGTEQTSYIPFPLNPETRLDVIPVRLHFRETIPQARQPISHRRVCVNNGMGP--LKGG 394

Query: 61  GEASRNSDRPGNITNSRRRERFEIPEGRRTMILFVLSSPALVSGLMVVRAKNLVHSVLFP 120
           GEASR SDRP +I +SRRRERFEIPEGRRTMIL VLSS ALVSGLMV RAKN VHSVLFP
Sbjct: 395 GEASRTSDRPRHINHSRRRERFEIPEGRRTMILSVLSSLALVSGLMVARAKNPVHSVLFP 454

Query: 121 ILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMI-HIQIAEIHEEVLRYLPVS 180
           I VFR+TSGLLLLLGLDF AMIFPVVHIGAIAVSFLFVVM+ HIQIAEIHEEVLRYLPVS
Sbjct: 455 IPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVS 514

Query: 181 GIIRLIFWWEMLFILDNETIPLLPTQRNTTSLRYTVYAGKM 221
           GII LIFWWEM FILDNETIPLLPTQRNTTSLRYTVYAGK+
Sbjct: 515 GIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKV 553

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BLAST of Spg034673 vs. NCBI nr
Match: MBA0757956.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 265.8 bits (678), Expect = 6.2e-67
Identity = 147/162 (90.74%), Postives = 151/162 (93.21%), Query Frame = 0


Query: 60  GGEASRNSDRPGNITNSRRRERFEIPEGRRTMILFVLSSPALVSGLMVVRAKNLVHSVLF 119
           GGEASR SDRP +I NSRRRERFEIPEGRRTMIL VLSSPALVSGLMV RAKN VHSVLF
Sbjct: 29  GGEASRTSDRPRHIKNSRRRERFEIPEGRRTMILSVLSSPALVSGLMVARAKNPVHSVLF 88

Query: 120 PILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMI-HIQIAEIHEEVLRYLPV 179
           PILVFR+TSGLLLLLGLDF AMIFPVVHIGAIAVSFLFVVM+ HIQIAEIHEEVLRYLPV
Sbjct: 89  PILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPV 148

Query: 180 SGIIRLIFWWEMLFILDNETIPLLPTQRNTTSLRYTVYAGKM 221
           SGII LIFWWEM FILDNETIPLLPTQRNTTSLRYTVYA K+
Sbjct: 149 SGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAVKV 190

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BLAST of Spg034673 vs. NCBI nr
Match: PWA38432.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 [Artemisia annua])

HSP 1 Score: 226.9 bits (577), Expect = 3.2e-55
Identity = 128/154 (83.12%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 83  EIPEGRRTMILFVLSSPALVSGLMVVRAKNLVHSVLFPILVFRNTSGLLLLLGLDFFAMI 142
           ++ EGRRTMIL VLSS ALVSGLMVVRAKN VHSVLFPI VFRNTSGLLLLLGLDFFAMI
Sbjct: 21  DVKEGRRTMILSVLSSLALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMI 80

Query: 143 FPVVHIGAIAVSFLFVVMI-HIQIAEIHEEVLRYLPVSGIIRLIFWWEMLFILDNETIPL 202
           FPVV+IGAIAVSFLFVVM+ HIQIAEIHEEVLRYLPVSGII LIFWWEM FILDNE+IPL
Sbjct: 81  FPVVYIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPL 140

Query: 203 LPTQRNTTSLRYTVYAGKMAVTVRKRRRLAWLWL 236
           LPTQRNTTSLRY VYAGK+ +    + RL   WL
Sbjct: 141 LPTQRNTTSLRYMVYAGKLRLLNLVQVRLWLYWL 174

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BLAST of Spg034673 vs. NCBI nr
Match: KJB09804.1 (hypothetical protein B456_001G168000, partial [Gossypium raimondii])

HSP 1 Score: 225.3 bits (573), Expect = 9.2e-55
Identity = 125/136 (91.91%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 86  EGRRTMILFVLSSPALVSGLMVVRAKNLVHSVLFPILVFRNTSGLLLLLGLDFFAMIFPV 145
           EGRRTMIL VLSSPALVSGLMV RAKN VHSVLFPILVFR+TSGLLLLLGLDF AMIFPV
Sbjct: 1   EGRRTMILSVLSSPALVSGLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPV 60

Query: 146 VHIGAIAVSFLFVVMI-HIQIAEIHEEVLRYLPVSGIIRLIFWWEMLFILDNETIPLLPT 205
           VHIGAIAVSFLFVVM+ HIQIAEIHEEVLRYLPVSGII LIFWWEM FILDNETIPLLPT
Sbjct: 61  VHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPT 120

Query: 206 QRNTTSLRYTVYAGKM 221
           QRNTTSLRYTVYA K+
Sbjct: 121 QRNTTSLRYTVYAVKV 136

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BLAST of Spg034673 vs. NCBI nr
Match: XP_039833224.1 (NADH-ubiquinone oxidoreductase chain 6 [Panicum virgatum] >XP_039833294.1 NADH-ubiquinone oxidoreductase chain 6 [Panicum virgatum] >KAG2481378.1 hypothetical protein PVAP13_J668200 [Panicum virgatum])

HSP 1 Score: 224.6 bits (571), Expect = 1.6e-54
Identity = 124/141 (87.94%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 81  RFEIPEGRRTMILFVLSSPALVSGLMVVRAKNLVHSVLFPILVFRNTSGLLLLLGLDFFA 140
           +F   EGRRTMIL VLSSPALVSGLMVVRAKN VHSVLFPILVF +TSGLL+LLGLDF A
Sbjct: 9   KFHFKEGRRTMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSA 68

Query: 141 MIFPVVHIGAIAVSFLFVVMI-HIQIAEIHEEVLRYLPVSGIIRLIFWWEMLFILDNETI 200
           MIFPVVHIGAIAVSFLFVVM+ +IQIAEIHEEVLRYLPVSGII LIFWWEM FILDNETI
Sbjct: 69  MIFPVVHIGAIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETI 128

Query: 201 PLLPTQRNTTSLRYTVYAGKM 221
           PLLPT RNTTSLRYTVYAGK+
Sbjct: 129 PLLPTHRNTTSLRYTVYAGKV 149

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BLAST of Spg034673 vs. ExPASy Swiss-Prot
Match: Q02500 (NADH-ubiquinone oxidoreductase chain 6 OS=Triticum aestivum OX=4565 GN=ND6 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.1e-55
Identity = 122/141 (86.52%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 81  RFEIPEGRRTMILFVLSSPALVSGLMVVRAKNLVHSVLFPILVFRNTSGLLLLLGLDFFA 140
           +F    GRRTMIL VLSSPALVSGLMVVRAKN VHSVLFPILVF +TSGLL+LLGLDF A
Sbjct: 9   KFHFKGGRRTMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSA 68

Query: 141 MIFPVVHIGAIAVSFLFVVMI-HIQIAEIHEEVLRYLPVSGIIRLIFWWEMLFILDNETI 200
           MI PVVHIGAIAVSFLFVVM+ +IQIAEIHEEVLRYLPVSGII LIFWWEM FILDNETI
Sbjct: 69  MISPVVHIGAIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETI 128

Query: 201 PLLPTQRNTTSLRYTVYAGKM 221
           PLLPT RNTTSLRYTVYAGK+
Sbjct: 129 PLLPTHRNTTSLRYTVYAGKV 149

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BLAST of Spg034673 vs. ExPASy Swiss-Prot
Match: P60498 (NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris OX=3711 GN=ND6 PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.5e-55
Identity = 120/131 (91.60%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 91  MILFVLSSPALVSGLMVVRAKNLVHSVLFPILVFRNTSGLLLLLGLDFFAMIFPVVHIGA 150
           MIL VLSSPALVSGLMV RAKN VHSVLFPI VFR+TSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 151 IAVSFLFVVMI-HIQIAEIHEEVLRYLPVSGIIRLIFWWEMLFILDNETIPLLPTQRNTT 210
           IAVSFLFVVM+ HIQIAEIHEEVLRYLPVSGII LIFWWEM FILDNE+IPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 211 SLRYTVYAGKM 221
           SLRYTVYAGK+
Sbjct: 121 SLRYTVYAGKV 131

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BLAST of Spg034673 vs. ExPASy Swiss-Prot
Match: P60497 (NADH-ubiquinone oxidoreductase chain 6 OS=Arabidopsis thaliana OX=3702 GN=ND6 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.1e-50
Identity = 116/131 (88.55%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 91  MILFVLSSPALVSGLMVVRAKNLVHSVLFPILVFRNTSGLLLLLGLDFFAMIFPVVHIGA 150
           MIL VLSS ALVSGLMVVRAKN VHSVLF ILVF +TSGLLLLLGLDFFAMIF VV+IGA
Sbjct: 1   MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGA 60

Query: 151 IAVSFLFVVMI-HIQIAEIHEEVLRYLPVSGIIRLIFWWEMLFILDNETIPLLPTQRNTT 210
           IAV FLFVVM+ HIQIAEIHEEVLRYLPVSGII LIFWWEM FILDNE+IPLLPTQRNTT
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 211 SLRYTVYAGKM 221
           SLRYTVYAGK+
Sbjct: 121 SLRYTVYAGKV 131

[Close]

BLAST of Spg034673 vs. ExPASy Swiss-Prot
Match: P26850 (NADH-ubiquinone oxidoreductase chain 6 OS=Marchantia polymorpha OX=3197 GN=ND6 PE=2 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 2.6e-36
Identity = 93/132 (70.45%), Postives = 107/132 (81.06%), Query Frame = 0


Query: 91  MILF-VLSSPALVSGLMVVRAKNLVHSVLFPILVFRNTSGLLLLLGLDFFAMIFPVVHIG 150
           MILF V    ALVSG MV+RAKN VHSVLF ILVF NTSGLL+LLGLDFFAMIF VV++G
Sbjct: 1   MILFYVFVVLALVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVG 60

Query: 151 AIAVSFLFVV-MIHIQIAEIHEEVLRYLPVSGIIRLIFWWEMLFILDNETIPLLPTQRNT 210
           AIAV FLFVV M+HI+I EIHE VLRYLPV GII LIF  E+  ++DN+ IP+LPT+ + 
Sbjct: 61  AIAVLFLFVVMMLHIRIEEIHENVLRYLPVGGIIGLIFLLEIFLMVDNDYIPILPTKLSA 120

Query: 211 TSLRYTVYAGKM 221
           T L YTVYAGK+
Sbjct: 121 TYLTYTVYAGKI 132

[Close]

BLAST of Spg034673 vs. ExPASy Swiss-Prot
Match: Q37626 (NADH-ubiquinone oxidoreductase chain 6 OS=Prototheca wickerhamii OX=3111 GN=ND6 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-25
Identity = 66/121 (54.55%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 92  ILFVLSSPALVSGLMVVRAKNLVHSVLFPILVFRNTSGLLLLLGLDFFAMIFPVVHIGAI 151
           + ++ SS  L+SG +V++A+N VHSVLF +LVF N +GLL+LLGLDFFA+IF VV++GAI
Sbjct: 4   LFYIFSSLTLISGSLVIQARNPVHSVLFLVLVFFNAAGLLVLLGLDFFALIFLVVYVGAI 63

Query: 152 AVSFLFVV-MIHIQIAEIHEEVLRYLPVSGIIRLIFWWEMLFILDNETIPLLPTQRNTTS 211
           AV FLFVV M++I+I EI E+ LRYLPV G++ ++F +E+  ++DN+ IPLL      T+
Sbjct: 64  AVLFLFVVMMLNIRITEISEKRLRYLPVGGVLGVLFLFEICILIDNDCIPLLSYDIENTA 123

[Close]

BLAST of Spg034673 vs. ExPASy TrEMBL
Match: A0A5C7GNW2 (S4 RNA-binding domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_028284 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 5.8e-95
Identity = 194/221 (87.78%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 1   MHRGTKRTSYIPFPLNPETRSDVIPVRLHFSETISQARQSINHRRVCVNKGMGPRTLKGG 60
           MHRGT++TSYIPFPLNPETR DVIPVRLHF ETI QARQ I+HRRVCVN GMGP  LKGG
Sbjct: 335 MHRGTEQTSYIPFPLNPETRLDVIPVRLHFRETIPQARQPISHRRVCVNNGMGP--LKGG 394

Query: 61  GEASRNSDRPGNITNSRRRERFEIPEGRRTMILFVLSSPALVSGLMVVRAKNLVHSVLFP 120
           GEASR SDRP +I +SRRRERFEIPEGRRTMIL VLSS ALVSGLMV RAKN VHSVLFP
Sbjct: 395 GEASRTSDRPRHINHSRRRERFEIPEGRRTMILSVLSSLALVSGLMVARAKNPVHSVLFP 454

Query: 121 ILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMI-HIQIAEIHEEVLRYLPVS 180
           I VFR+TSGLLLLLGLDF AMIFPVVHIGAIAVSFLFVVM+ HIQIAEIHEEVLRYLPVS
Sbjct: 455 IPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVS 514

Query: 181 GIIRLIFWWEMLFILDNETIPLLPTQRNTTSLRYTVYAGKM 221
           GII LIFWWEM FILDNETIPLLPTQRNTTSLRYTVYAGK+
Sbjct: 515 GIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAGKV 553

[Close]

BLAST of Spg034673 vs. ExPASy TrEMBL
Match: A0A5C7GQ79 (S4 RNA-binding domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_027769 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.6e-71
Identity = 155/179 (86.59%), Postives = 162/179 (90.50%), Query Frame = 0


Query: 1   MHRGTKRTSYIPFPLNPETRSDVIPVRLHFSETISQARQSINHRRVCVNKGMGPRTLKGG 60
           MHRGT++TSYIPFPLNPETR DVIPVRLHF ETI QARQ I+HRRVCVN GMGP  LKGG
Sbjct: 335 MHRGTEQTSYIPFPLNPETRLDVIPVRLHFRETIPQARQPISHRRVCVNNGMGP--LKGG 394

Query: 61  GEASRNSDRPGNITNSRRRERFEIPEGRRTMILFVLSSPALVSGLMVVRAKNLVHSVLFP 120
           GEASR SDRP +I +SRRRERFEIPEGRRTMIL VLSS ALVSGLMV RAKN VHSVLFP
Sbjct: 395 GEASRTSDRPRHINHSRRRERFEIPEGRRTMILSVLSSLALVSGLMVARAKNPVHSVLFP 454

Query: 121 ILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMI-HIQIAEIHEEVLRYLPV 179
           I VFR+TSGLLLLLGLDF AMIFPVVHIGAIAVSFLFVVM+ HIQIAEIHEEVLRYLPV
Sbjct: 455 IPVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPV 511

[Close]

BLAST of Spg034673 vs. ExPASy TrEMBL
Match: A0A7J9DB23 (Uncharacterized protein (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_020999 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.0e-67
Identity = 147/162 (90.74%), Postives = 151/162 (93.21%), Query Frame = 0


Query: 60  GGEASRNSDRPGNITNSRRRERFEIPEGRRTMILFVLSSPALVSGLMVVRAKNLVHSVLF 119
           GGEASR SDRP +I NSRRRERFEIPEGRRTMIL VLSSPALVSGLMV RAKN VHSVLF
Sbjct: 29  GGEASRTSDRPRHIKNSRRRERFEIPEGRRTMILSVLSSPALVSGLMVARAKNPVHSVLF 88

Query: 120 PILVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMI-HIQIAEIHEEVLRYLPV 179
           PILVFR+TSGLLLLLGLDF AMIFPVVHIGAIAVSFLFVVM+ HIQIAEIHEEVLRYLPV
Sbjct: 89  PILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPV 148

Query: 180 SGIIRLIFWWEMLFILDNETIPLLPTQRNTTSLRYTVYAGKM 221
           SGII LIFWWEM FILDNETIPLLPTQRNTTSLRYTVYA K+
Sbjct: 149 SGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAVKV 190

[Close]

BLAST of Spg034673 vs. ExPASy TrEMBL
Match: A0A2U1KNW6 (NAD(P)H dehydrogenase subunit 6 OS=Artemisia annua OX=35608 GN=CTI12_AA581450 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.5e-55
Identity = 128/154 (83.12%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 83  EIPEGRRTMILFVLSSPALVSGLMVVRAKNLVHSVLFPILVFRNTSGLLLLLGLDFFAMI 142
           ++ EGRRTMIL VLSS ALVSGLMVVRAKN VHSVLFPI VFRNTSGLLLLLGLDFFAMI
Sbjct: 21  DVKEGRRTMILSVLSSLALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMI 80

Query: 143 FPVVHIGAIAVSFLFVVMI-HIQIAEIHEEVLRYLPVSGIIRLIFWWEMLFILDNETIPL 202
           FPVV+IGAIAVSFLFVVM+ HIQIAEIHEEVLRYLPVSGII LIFWWEM FILDNE+IPL
Sbjct: 81  FPVVYIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPL 140

Query: 203 LPTQRNTTSLRYTVYAGKMAVTVRKRRRLAWLWL 236
           LPTQRNTTSLRY VYAGK+ +    + RL   WL
Sbjct: 141 LPTQRNTTSLRYMVYAGKLRLLNLVQVRLWLYWL 174

[Close]

BLAST of Spg034673 vs. ExPASy TrEMBL
Match: A0A0D2PSI1 (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_001G168000 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.5e-55
Identity = 125/136 (91.91%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 86  EGRRTMILFVLSSPALVSGLMVVRAKNLVHSVLFPILVFRNTSGLLLLLGLDFFAMIFPV 145
           EGRRTMIL VLSSPALVSGLMV RAKN VHSVLFPILVFR+TSGLLLLLGLDF AMIFPV
Sbjct: 1   EGRRTMILSVLSSPALVSGLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPV 60

Query: 146 VHIGAIAVSFLFVVMI-HIQIAEIHEEVLRYLPVSGIIRLIFWWEMLFILDNETIPLLPT 205
           VHIGAIAVSFLFVVM+ HIQIAEIHEEVLRYLPVSGII LIFWWEM FILDNETIPLLPT
Sbjct: 61  VHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPT 120

Query: 206 QRNTTSLRYTVYAGKM 221
           QRNTTSLRYTVYA K+
Sbjct: 121 QRNTTSLRYTVYAVKV 136

[Close]

BLAST of Spg034673 vs. TAIR 10
Match: ATMG00270.1 (NADH dehydrogenase 6 )

HSP 1 Score: 217.6 bits (553), Expect = 1.8e-56
Identity = 120/131 (91.60%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 91  MILFVLSSPALVSGLMVVRAKNLVHSVLFPILVFRNTSGLLLLLGLDFFAMIFPVVHIGA 150
           MIL VLSSPALVSGLMV RAKN VHSVLFPI VFR+TSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 151 IAVSFLFVVMI-HIQIAEIHEEVLRYLPVSGIIRLIFWWEMLFILDNETIPLLPTQRNTT 210
           IAVSFLFVVM+ HIQIAEIHEEVLRYLPVSGII LIFWWEM FILDNE+IPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 211 SLRYTVYAGKM 221
           SLRYTVYAGK+
Sbjct: 121 SLRYTVYAGKV 131

[Close]

BLAST of Spg034673 vs. TAIR 10
Match: AT2G07734.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 99.4 bits (246), Expect = 7.1e-21
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MHRGTKRTSYIPFPLNPETRSDVIPVRLHFSETISQARQSINHRRVCVNKGM 53
           MHRGTKRTSYIPFPLNPETR DVIP+RLHF ETI QARQ I+HRRVCVNKGM
Sbjct: 87  MHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETIPQARQPISHRRVCVNKGM 138

[Close]

BLAST of Spg034673 vs. TAIR 10
Match: ATMG00290.1 (mitochondrial ribosomal protein S4 )

HSP 1 Score: 99.4 bits (246), Expect = 7.1e-21
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MHRGTKRTSYIPFPLNPETRSDVIPVRLHFSETISQARQSINHRRVCVNKGM 53
           MHRGTKRTSYIPFPLNPETR DVIP+RLHF ETI QARQ I+HRRVCVNKGM
Sbjct: 87  MHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETIPQARQPISHRRVCVNKGM 138

[Close]

BLAST of Spg034673 vs. TAIR 10
Match: AT2G07718.1 (Cytochrome b/b6 protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-07
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 90  TMILFVLSSPALVSGLMVVRAKNLVHSVLFPILVFRNTSGLLLLLGLDFFAMIFPVVHIG 149
           TMIL VLSSPALVSGLMV RAKNLVHSVLFPI +F + + L       +F  +  + H+ 
Sbjct: 44  TMILSVLSSPALVSGLMVARAKNLVHSVLFPIPIFFSINQL-----FHYFCRLPIIKHLA 103

Query: 150 AIAVSFLFVV 160
                 LF++
Sbjct: 104 TKCQLLLFLI 108

[Close]

BLAST of Spg034673 vs. TAIR 10
Match: ATMG00590.1 (Cytochrome b/b6 protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-07
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 90  TMILFVLSSPALVSGLMVVRAKNLVHSVLFPILVFRNTSGLLLLLGLDFFAMIFPVVHIG 149
           TMIL VLSSPALVSGLMV RAKNLVHSVLFPI +F + + L       +F  +  + H+ 
Sbjct: 44  TMILSVLSSPALVSGLMVARAKNLVHSVLFPIPIFFSINQL-----FHYFCRLPIIKHLA 103

Query: 150 AIAVSFLFVV 160
                 LF++
Sbjct: 104 TKCQLLLFLI 108

The following BLAST results are available for this feature:

BLAST of Spg034673 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG46253.1	1.2e-94	87.78	hypothetical protein EZV62_028284 [Acer yangbiense]	[more]
MBA0757956.1	6.2e-67	90.74	hypothetical protein [Gossypium trilobum]	[more]
PWA38432.1	3.2e-55	83.12	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 [Artemisia annua]	[more]
KJB09804.1	9.2e-55	91.91	hypothetical protein B456_001G168000, partial [Gossypium raimondii]	[more]
XP_039833224.1	1.6e-54	87.94	NADH-ubiquinone oxidoreductase chain 6 [Panicum virgatum] >XP_039833294.1 NADH-u...	[more]

BLAST of Spg034673 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q02500	1.1e-55	86.52	NADH-ubiquinone oxidoreductase chain 6 OS=Triticum aestivum OX=4565 GN=ND6 PE=3 ...	[more]
P60498	2.5e-55	91.60	NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris OX=3711 GN=ND6 PE=...	[more]
P60497	1.1e-50	88.55	NADH-ubiquinone oxidoreductase chain 6 OS=Arabidopsis thaliana OX=3702 GN=ND6 PE...	[more]
P26850	2.6e-36	70.45	NADH-ubiquinone oxidoreductase chain 6 OS=Marchantia polymorpha OX=3197 GN=ND6 P...	[more]
Q37626	2.1e-25	54.55	NADH-ubiquinone oxidoreductase chain 6 OS=Prototheca wickerhamii OX=3111 GN=ND6 ...	[more]

BLAST of Spg034673 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7GNW2	5.8e-95	87.78	S4 RNA-binding domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_...	[more]
A0A5C7GQ79	2.6e-71	86.59	S4 RNA-binding domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_...	[more]
A0A7J9DB23	3.0e-67	90.74	Uncharacterized protein (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_02099...	[more]
A0A2U1KNW6	1.5e-55	83.12	NAD(P)H dehydrogenase subunit 6 OS=Artemisia annua OX=35608 GN=CTI12_AA581450 PE...	[more]
A0A0D2PSI1	4.5e-55	91.91	Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_001G1...	[more]

BLAST of Spg034673 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00270.1	1.8e-56	91.60	NADH dehydrogenase 6	[more]
AT2G07734.1	7.1e-21	88.46	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein	[more]
ATMG00290.1	7.1e-21	88.46	mitochondrial ribosomal protein S4	[more]
AT2G07718.1	1.5e-07	51.43	Cytochrome b/b6 protein	[more]
ATMG00590.1	1.5e-07	51.43	Cytochrome b/b6 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 22..50 e-value: 3.4E-5 score: 23.5
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 20..49 e-value: 4.48396E-5 score: 39.155
IPR001457	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6	PFAM	PF00499	Oxidored_q3	coord: 104..211 e-value: 1.4E-17 score: 63.7
IPR042106	NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	GENE3D	1.20.120.1200		coord: 90..225 e-value: 3.3E-20 score: 74.1
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 18..56 e-value: 1.5E-6 score: 30.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..80
None	No IPR available	PANTHER	PTHR33269:SF5	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6	coord: 86..223
None	No IPR available	PANTHER	PTHR33269	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6	coord: 86..223
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 9..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034673.1	Spg034673.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0070469	respirasome
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0003723	RNA binding