Spg034314 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034314
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotrans_gag domain-containing protein
Location	scaffold12: 21679403 .. 21681601 (+)
RNA-Seq Expression	Spg034314
Synteny	Spg034314

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCCGGGTTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAAGAATTCGTGAGCCAAAAAGGACTTGAAGTAGGTTTAATGTCAGGAGAAAGATAAAGGGTAGCAGAGAAGCTCAAATCTGTGTTGTTTGTGTTCGGGGCGTTTCTGGGAAAATTAGTTGGGAATCCCGTTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTATAGTACATTAATTTTGGTTAAGTATTAAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGATTCTTAATTCAATTGTTTAGAAATTCATGAGCATGGAAAGACAAAACTAATTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTTGAGTCTACAGACCAGGGAACTAGCTAAGACAGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACGGTTGTTCATGTTTAGACGTTTTATATGCTTTTCTATGAATGATACATGATTTCTATGAATGGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAATGAGGTTTATATACGAGCACGTGGTTAATGACTTTATGACAAGTAGTTGAAACGATATCTTTTAAAGTAAAGCATGTATTAGCAAGTATTTTTTTTTAAAGATTTTCAGTTTTTTCACGAGCAAGCTGAGTACACTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTCTAATGTGTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACTGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGAAAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCCACACAACGTAGATCGGTCATGTTAGTTAAAATGTTTGATGTACTTGAAATGCCTTGCTAGATATTTAATAACGTACTTGCGAGTTATTTGAGAAAGCTTTTATCGTTACACGTTTATGTTAAACGCTTGATTGAACAGATTTATACGCTTAAAGGTTTATCACGTGTTCCGATTTGCAAATCTACAGTTTTTAAAGCTAGTCACTCACTGGGCTTCATAGCTCATTCTTTCAAAATGTTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTATCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGTAAATGTTTTGTAAGGATTGGACAATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCCATTTGTATATGTTTTTGGTTGTGAAATCTATATCAGGTTATTTTCCAAATCGAGTTATGTCAGGGCTGCACCTCGTGTTTGTTAAAAGTGTTTTCAGGGATTCCACTGTGTTGTGTTTCATGTAGAATGTTTCATATCTGGGATTAGTATGTTTATCAGGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATTTAATATATTTTTTTATTTGGTCTTTAGGAGCAAATTATGGATTTTGGTGGAAAAAATGCCCAAAATGAGCTATCCAAGCCCAAATTTCCATACATGGGTCAATGGGGAGTCCAAGAAGTCAACCATATAAAGAAGATCCAGAAAGAAATGAAGAAAGGCCCAATTTCAAGCCAAATCCGCGCTAGCCTAGTCTGAAAACCGCATAGCGTCGCGACGCTGTCCCATTTCTTGGCCAGCAAGTTGAGTGACGTCACAGCGTCGCGACGCTGTCCCAAATCCGGGCCTATAAAAGGCGCCCCTTGGTGCCCATTTTATGCATCAATCATTCATTCTTCCACCCATTCCTTTCTTTCCTTGGCTCCTTTGGAGCCTTCTCTCAAGGCTTTTTAG

mRNA sequence

ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCCGGGTTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAAGAATTCGCCAAGAGGAAATAGGTTGAGTCTACAGACCAGGGAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTATCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGCGTCGCGACGCTGTCCCAAATCCGGGCCTATAAAAGGCGCCCCTTGGTGCCCATTTTATGCATCAATCATTCATTCTTCCACCCATTCCTTTCTTTCCTTGGCTCCTTTGGAGCCTTCTCTCAAGGCTTTTTAG

Coding sequence (CDS)

ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCCGGGTTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAAGAATTCGCCAAGAGGAAATAGGTTGAGTCTACAGACCAGGGAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTATCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGCGTCGCGACGCTGTCCCAAATCCGGGCCTATAAAAGGCGCCCCTTGGTGCCCATTTTATGCATCAATCATTCATTCTTCCACCCATTCCTTTCTTTCCTTGGCTCCTTTGGAGCCTTCTCTCAAGGCTTTTTAG

Protein sequence

MVFGMENRAQDFRAKQEDLWFPLVFRAFRVVQVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKTVEIELPVSDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGASRRCPKSGPIKGAPWCPFYASIIHSSTHSFLSLAPLEPSLKAF

Homology

[Close]

BLAST of Spg034314 vs. NCBI nr
Match: TYJ96965.1 (uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 5.2e-15
Identity = 51/65 (78.46%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 32  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKTVEIELPVSDTLPTSAESSR 91
           QVESEALFGMV KLIQ+PTTFM   PRGNR S QT +L KTVEIELPV DTLPTSAESS 
Sbjct: 112 QVESEALFGMVRKLIQYPTTFMNIWPRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSG 171

Query: 92  SSSSS 97
           S+SS+
Sbjct: 172 SNSST 176

[Close]

BLAST of Spg034314 vs. NCBI nr
Match: KAA0037514.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 4.1e-12
Identity = 51/82 (62.20%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 32  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT-----------------VE 91
           QVESEA  G VGKLIQ+PTTFMK  PRGNR SLQTREL KT                 VE
Sbjct: 882 QVESEARLGRVGKLIQYPTTFMKILPRGNRPSLQTRELDKTVIFLLSTLSVLRDNDAVVE 941

Query: 92  IELPVSDTLPTSAESSRSSSSS 97
           IELPV DTLPTS ES  S+SS+
Sbjct: 942 IELPVPDTLPTSVESFGSNSST 963

[Close]

BLAST of Spg034314 vs. NCBI nr
Match: TYK01989.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 4.1e-12
Identity = 51/82 (62.20%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 32  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT-----------------VE 91
           QVESEA  G VGKLIQ+PTTFMK  PRGNR SLQTREL KT                 VE
Sbjct: 882 QVESEARLGRVGKLIQYPTTFMKILPRGNRPSLQTRELDKTVIFLLSTLSVLRDNDAVVE 941

Query: 92  IELPVSDTLPTSAESSRSSSSS 97
           IELPV DTLPTS ES  S+SS+
Sbjct: 942 IELPVPDTLPTSVESFGSNSST 963

[Close]

BLAST of Spg034314 vs. NCBI nr
Match: KAA0045180.1 (uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 7.1e-12
Identity = 63/159 (39.62%), Postives = 71/159 (44.65%), Query Frame = 0


Query: 32  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT------------------- 91
           QVESEALF MVGKLIQ+PTT MK  PRGNR SLQT EL KT                   
Sbjct: 100 QVESEALFDMVGKLIQYPTTVMKILPRGNRPSLQTGELDKTVIFSLSTLSVLCDNDDVVS 159

Query: 92  --------------VEIELPVSDTLPTSAE-----------------------------S 129
                         VEIELPV DTLPTSA+                             S
Sbjct: 160 AGRALLRQRRWECQVEIELPVPDTLPTSAKVSDQTPVRGWSCILSLSMLKCFVRLFYKPS 219

[Close]

BLAST of Spg034314 vs. NCBI nr
Match: KAA0037515.1 (uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa] >TYK01990.1 uncharacterized protein E5676_scaffold808G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 6.0e-11
Identity = 50/89 (56.18%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 57  PRGNRLSLQTRELAKT-----------------VEIELPVSDTLPTSAESSRSSSSSTFQ 116
           PRGNRLSLQT EL KT                 VEIELPVSDTLP SAESS S+S S   
Sbjct: 100 PRGNRLSLQTGELDKTVIFLLLTLTVLCDNDAIVEIELPVSDTLPMSAESSGSNSRSA-- 159

Query: 117 EGQRVSLEEDDVRWLHAIFRTKLAGGPGG 129
                 + EDDV WLH +FR K AGGPGG
Sbjct: 160 ----GIVREDDVCWLHVVFRVKTAGGPGG 182

[Close]

BLAST of Spg034314 vs. ExPASy TrEMBL
Match: A0A5D3BET3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00070 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.5e-15
Identity = 51/65 (78.46%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 32  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKTVEIELPVSDTLPTSAESSR 91
           QVESEALFGMV KLIQ+PTTFM   PRGNR S QT +L KTVEIELPV DTLPTSAESS 
Sbjct: 112 QVESEALFGMVRKLIQYPTTFMNIWPRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSG 171

Query: 92  SSSSS 97
           S+SS+
Sbjct: 172 SNSST 176

[Close]

BLAST of Spg034314 vs. ExPASy TrEMBL
Match: A0A5D3BV68 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001010 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-12
Identity = 51/82 (62.20%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 32  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT-----------------VE 91
           QVESEA  G VGKLIQ+PTTFMK  PRGNR SLQTREL KT                 VE
Sbjct: 882 QVESEARLGRVGKLIQYPTTFMKILPRGNRPSLQTRELDKTVIFLLSTLSVLRDNDAVVE 941

Query: 92  IELPVSDTLPTSAESSRSSSSS 97
           IELPV DTLPTS ES  S+SS+
Sbjct: 942 IELPVPDTLPTSVESFGSNSST 963

[Close]

BLAST of Spg034314 vs. ExPASy TrEMBL
Match: A0A5A7T223 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G001250 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-12
Identity = 51/82 (62.20%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 32  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT-----------------VE 91
           QVESEA  G VGKLIQ+PTTFMK  PRGNR SLQTREL KT                 VE
Sbjct: 882 QVESEARLGRVGKLIQYPTTFMKILPRGNRPSLQTRELDKTVIFLLSTLSVLRDNDAVVE 941

Query: 92  IELPVSDTLPTSAESSRSSSSS 97
           IELPV DTLPTS ES  S+SS+
Sbjct: 942 IELPVPDTLPTSVESFGSNSST 963

[Close]

BLAST of Spg034314 vs. ExPASy TrEMBL
Match: A0A5A7TPS6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G001810 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-12
Identity = 63/159 (39.62%), Postives = 71/159 (44.65%), Query Frame = 0


Query: 32  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT------------------- 91
           QVESEALF MVGKLIQ+PTT MK  PRGNR SLQT EL KT                   
Sbjct: 100 QVESEALFDMVGKLIQYPTTVMKILPRGNRPSLQTGELDKTVIFSLSTLSVLCDNDDVVS 159

Query: 92  --------------VEIELPVSDTLPTSAE-----------------------------S 129
                         VEIELPV DTLPTSA+                             S
Sbjct: 160 AGRALLRQRRWECQVEIELPVPDTLPTSAKVSDQTPVRGWSCILSLSMLKCFVRLFYKPS 219

[Close]

BLAST of Spg034314 vs. ExPASy TrEMBL
Match: A0A5D3BSA6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001020 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-11
Identity = 50/89 (56.18%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 57  PRGNRLSLQTRELAKT-----------------VEIELPVSDTLPTSAESSRSSSSSTFQ 116
           PRGNRLSLQT EL KT                 VEIELPVSDTLP SAESS S+S S   
Sbjct: 100 PRGNRLSLQTGELDKTVIFLLLTLTVLCDNDAIVEIELPVSDTLPMSAESSGSNSRSA-- 159

Query: 117 EGQRVSLEEDDVRWLHAIFRTKLAGGPGG 129
                 + EDDV WLH +FR K AGGPGG
Sbjct: 160 ----GIVREDDVCWLHVVFRVKTAGGPGG 182

The following BLAST results are available for this feature:

BLAST of Spg034314 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96965.1	5.2e-15	78.46	uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]	[more]
KAA0037514.1	4.1e-12	62.20	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK01989.1	4.1e-12	62.20	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0045180.1	7.1e-12	39.62	uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]	[more]
KAA0037515.1	6.0e-11	56.18	uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of Spg034314 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg034314 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BET3	2.5e-15	78.46	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BV68	2.0e-12	62.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold80...	[more]
A0A5A7T223	2.0e-12	62.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5A7TPS6	3.4e-12	39.62	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BSA6	2.9e-11	56.18	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Spg034314 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034314.1	Spg034314.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016740	transferase activity