Spg033416 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg033416
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptioninfluenza virus NS1A-binding protein homolog
Locationscaffold5: 825790 .. 828290 (+)
RNA-Seq ExpressionSpg033416
SyntenySpg033416
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCATCGACTTCAACTCCTCCGATGAGAAACCCAGTCACTAGAAACCCTAAGATTTCAATCCCTCAGCAAAATCCATGCATTGTTCCACCAAATCAAGCCATCATCAACCAAACAGAAGCGCAAATCTTCCTTTACTATAATCCTCAACCCAGGTTTCAATGCCGACGAAATCAATAGACCAATCTTCTTTTTCCTCAAGATTAGAACAATGCTTTAACCAGTTTCCTCCTTAACTCAACCTCTTGCCATTGAACTTGCTGATACAAACTACCTTTCATGGAAGAATCAAGTGCTTGGTGTTATTATCTCACATGGGCTTTTGACATTTGGGAAACTTTGCGTAAAGTTTATGAATCATGATCCATCGTATAATGGGATCGCGTTCTCAACTTCGACAAGTGGAGAAAGACGGCCCCAATGTCAGCCAAGGTAGCATTATGGGGCACAGTTGGAGAAACAAACGGCTGTGGATCAACTGAATATGATTCAGGCGAATTTTGCTCACCTTGATTCTGAGCCGAATAACAAGCGATTCGGGAAAAAACTCAGCTCCGAAATCAACTCAGTTCCAGGGCCAAGGTTCTGTTGCTCCATCCTCTGCTTTACAACAATTGCTTTAATGGTTTAAGTTAGAAAATTTGTTGATCTAAGTATAGTAATAGTGAACTTGAAGTGTTTGAAGACGGTTTTTATTGATTGGATATAGGAATGTAGTAAAGCCAATTTTGGAGTTTTGACGTTAATTGAACGGACTATGTTGGAATCTCTTGAATCTTTAGGTATGACGATAGCTTGGAATGAAAAGAAATGGTAGCCATGGTTACAAGATCACGAATCATGTAATGTAATTGTTGAATAAAAGAAAGAATTGGAAGTAATAGAATTTTCCGGACATGAGTGTAATTTAGGACTCTTGGAGTCATGAATTTCAAGAGCTTTGAAGACAAGGGAAGATTGAATAAAGAAAAAATTGAACATAGAAACATCGAATAAGAGTAGAGAGACGTGAAGAAGAAGATGATGTCTAGCTCAATGGTTTAAGTTAGAATTCGTAGATACAAGTGTACGAGAAGTCAGCTTGAAGTTTGAAAGAACTTATAGTTTGAGGAATAACGAAAAGAATGGGTTTGTTAGTATTTGATAGCGAAGGACGTTAACATATTATTTTAATCATTGGTTAATTATAATAAGTTGATACAAGTGGATAAACTAAGTTTAGAATTTTGATTGTTCGAGTTTGAGAAATGCAATAGGTTCTGTAATTTAGAGCAAGAAAGAAAGAGGCTCTTGTTGGAGGAAGTGTGAGTTGGTGTAGCACTGTTTGGGATTTTGAGTAACATGGAATGAATTTGATTGTATCTTGGAGTCATGGGCTATAAAAGAAATGGTGGTTCTCCTCCTGGTATAAGTTATTGATTCTTTGTTTTTTTTTTTTAAAGGAAACAATTGTCTATGCAATTTCCTAACTTGAGGCTATGCAATCCTTTAAGTGCTGAGAGTCTGAAAATTGTTGACTTTGTAATTGGCACAGACATTTTGAAGCAAGCTTATTAGTGAAATTGTTTTGTTGAAGATTTGCAAGAGGGTGCTTGCTCTTGGAAGGATGAGGGTTGAACAATCTTGGTCCTGCTTGTGCTTTAAGTAATTCTGTATTTTTAACTAGTCTTGATACCAAACGCCTTGTTTATGACCGTTCTACAAAAGATGAAAATAGTTTTAAAACTGGTTTAATGCAGAAAACAACTCTCGCTAACCTATATTATATGACTTATGGGAGAAGTTCAAATCCTTTTCACAGTTGGAGGCAGAAGGAGAAGTCCAGGAGTTGGAGTCATATGTCAAAACTCAAATGCTTTATGTTTTTGGTGGTGGTAGTGGTTATGCATGGTATAACACAGGTCTGGGATTTTACTGATTTTCTAGGATGTCTGAGGTAGTGTAACCAAATAGCTTCTCACATTTCCATTCTTTTGTTGTTGAAGTTGAATTATATAACCTGGAGAATGATCAACGGACCTTGTGCCCTTTAAATGTGGAGAAGGGGAGCCTGGGGCTGGGAGGAGGAGTTACTGTTGGAAACAAATTATTTGCTGTTGGTAGGAAATGGCACTGAAGCAGGTGAGTTTTGCTGGAATGCAAAGTGTGACTTCGTAGGAAACCAACTAGTAATGTTGCCAACCTGAACGTAGCTCACTTATTAAGGCATTGTACCTTTGATCGTTAGATGTTTGAATCTCCATTCCCATATGTTGAATGGAAAAAAGAAACCATGAATAATGTTTCTTTGCCTTGCTAATGCTAATGTTGTTGTAGGTTCTAATAGGTTAGAAGAGATGATGTAGGGAGGAGCTGTTACTGCCACTGGGATTCTTCAAAGAGGTCATTTTTTAATTGAACAGGGAAGATTGAATTCTATAATTAGCAGATTAATGTGAATATTTAAGATTCAAAAGAAACCAAAAATTATTTTTAAATTTTTTTTTTTTTAATGTTAC

mRNA sequence

ATGGGAGCATCGACTTCAACTCCTCCGATGAGAAACCCAGTCACTAGAAACCCTAAGATTTCAATCCCTCAGCAAAATCCATGCATTGTTCCACCAAATCAAGCCATCATCAACCAAACAGAAGCGCAAATCTTCCTTTACTATAATCCTCAACCCAGGCGAATTTTGCTCACCTTGATTCTGAGCCGAATAACAAGCGATTCGGGAAAAAACTCAGCTCCGAAATCAACTCAGTTCCAGGGCCAAGTAACATGGAATGAATTTGATTGTATCTTGGAGTCATGGGCTATAAAAGAAATGGTGGTTCTCCTCCTGTTGGAGGCAGAAGGAGAAGTCCAGGAGTTGGAGTCATATGTCAAAACTCAAATGCTTTATGTTTTTGGTGGTGGTAGTGGTTATGCATGGTATAACACAGTTGAATTATATAACCTGGAGAATGATCAACGGACCTTGTGCCCTTTAAATGTGGAGAAGGGGAGCCTGGGGCTGGGAGGAGGAGTTACTGTTGGAAACAAATTATTTGCTGTTGGTTCTAATAGGTTAGAAGAGATGATGTAG

Coding sequence (CDS)

ATGGGAGCATCGACTTCAACTCCTCCGATGAGAAACCCAGTCACTAGAAACCCTAAGATTTCAATCCCTCAGCAAAATCCATGCATTGTTCCACCAAATCAAGCCATCATCAACCAAACAGAAGCGCAAATCTTCCTTTACTATAATCCTCAACCCAGGCGAATTTTGCTCACCTTGATTCTGAGCCGAATAACAAGCGATTCGGGAAAAAACTCAGCTCCGAAATCAACTCAGTTCCAGGGCCAAGTAACATGGAATGAATTTGATTGTATCTTGGAGTCATGGGCTATAAAAGAAATGGTGGTTCTCCTCCTGTTGGAGGCAGAAGGAGAAGTCCAGGAGTTGGAGTCATATGTCAAAACTCAAATGCTTTATGTTTTTGGTGGTGGTAGTGGTTATGCATGGTATAACACAGTTGAATTATATAACCTGGAGAATGATCAACGGACCTTGTGCCCTTTAAATGTGGAGAAGGGGAGCCTGGGGCTGGGAGGAGGAGTTACTGTTGGAAACAAATTATTTGCTGTTGGTTCTAATAGGTTAGAAGAGATGATGTAG

Protein sequence

MGASTSTPPMRNPVTRNPKISIPQQNPCIVPPNQAIINQTEAQIFLYYNPQPRRILLTLILSRITSDSGKNSAPKSTQFQGQVTWNEFDCILESWAIKEMVVLLLLEAEGEVQELESYVKTQMLYVFGGGSGYAWYNTVELYNLENDQRTLCPLNVEKGSLGLGGGVTVGNKLFAVGSNRLEEMM
Homology
[Close]
BLAST of Spg033416 vs. NCBI nr
Match: XP_022982773.1 (influenza virus NS1A-binding protein homolog [Cucurbita maxima] >XP_022982774.1 influenza virus NS1A-binding protein homolog [Cucurbita maxima])

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-12
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 124 LYVFGGGSGYAWYNTVELYNLENDQRTLCP-LNVEKGSLGLGGGVTVGNKLFAVG 178
           LYVFGGG+G AWYNTVE YNLE DQ TLCP LN+ KGSL   GGV++GNKLFA+G
Sbjct: 431 LYVFGGGNGCAWYNTVESYNLETDQWTLCPSLNLAKGSL---GGVSIGNKLFAIG 482

[Close]
BLAST of Spg033416 vs. NCBI nr
Match: KAG6580447.1 (Kelch-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-12
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 124 LYVFGGGSGYAWYNTVELYNLENDQRTLCP-LNVEKGSLGLGGGVTVGNKLFAVG 178
           LYVFGGG+G AWYNTVE YNLE DQ TLCP LN+ KGSL   GGV++GNKLFA+G
Sbjct: 462 LYVFGGGNGCAWYNTVESYNLETDQWTLCPSLNLAKGSL---GGVSIGNKLFAIG 513

[Close]
BLAST of Spg033416 vs. NCBI nr
Match: KAG7017201.1 (Kelch-like protein 8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-12
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 124 LYVFGGGSGYAWYNTVELYNLENDQRTLCP-LNVEKGSLGLGGGVTVGNKLFAVG 178
           LYVFGGG+G AWYNTVE YNLE DQ TLCP LN+ KGSL   GGV++GNKLFA+G
Sbjct: 431 LYVFGGGNGCAWYNTVESYNLETDQWTLCPSLNLAKGSL---GGVSIGNKLFAIG 482

[Close]
BLAST of Spg033416 vs. NCBI nr
Match: XP_022934311.1 (influenza virus NS1A-binding protein homolog [Cucurbita moschata] >XP_022934312.1 influenza virus NS1A-binding protein homolog [Cucurbita moschata] >XP_022934314.1 influenza virus NS1A-binding protein homolog [Cucurbita moschata])

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-12
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 124 LYVFGGGSGYAWYNTVELYNLENDQRTLCP-LNVEKGSLGLGGGVTVGNKLFAVG 178
           LYVFGGG+G AWYNTVE YNLE DQ TLCP LN+ KGSL   GGV++GNKLFA+G
Sbjct: 431 LYVFGGGNGCAWYNTVESYNLETDQWTLCPSLNLAKGSL---GGVSIGNKLFAIG 482

[Close]
BLAST of Spg033416 vs. NCBI nr
Match: XP_023527355.1 (influenza virus NS1A-binding protein homolog [Cucurbita pepo subsp. pepo] >XP_023527356.1 influenza virus NS1A-binding protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-12
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 124 LYVFGGGSGYAWYNTVELYNLENDQRTLCP-LNVEKGSLGLGGGVTVGNKLFAVG 178
           LYVFGGG+G AWYNTVE YNLE DQ TLCP LN+ KGSL   GGV++GNKLFA+G
Sbjct: 431 LYVFGGGNGCAWYNTVESYNLETDQWTLCPSLNLAKGSL---GGVSIGNKLFAIG 482

[Close]
BLAST of Spg033416 vs. ExPASy TrEMBL
Match: A0A6J1J5H4 (influenza virus NS1A-binding protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111481533 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-12
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 124 LYVFGGGSGYAWYNTVELYNLENDQRTLCP-LNVEKGSLGLGGGVTVGNKLFAVG 178
           LYVFGGG+G AWYNTVE YNLE DQ TLCP LN+ KGSL   GGV++GNKLFA+G
Sbjct: 431 LYVFGGGNGCAWYNTVESYNLETDQWTLCPSLNLAKGSL---GGVSIGNKLFAIG 482

[Close]
BLAST of Spg033416 vs. ExPASy TrEMBL
Match: A0A6J1F1G5 (influenza virus NS1A-binding protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111441514 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-12
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 124 LYVFGGGSGYAWYNTVELYNLENDQRTLCP-LNVEKGSLGLGGGVTVGNKLFAVG 178
           LYVFGGG+G AWYNTVE YNLE DQ TLCP LN+ KGSL   GGV++GNKLFA+G
Sbjct: 431 LYVFGGGNGCAWYNTVESYNLETDQWTLCPSLNLAKGSL---GGVSIGNKLFAIG 482

[Close]
BLAST of Spg033416 vs. ExPASy TrEMBL
Match: A0A6J1DU24 (influenza virus NS1A-binding protein homolog OS=Momordica charantia OX=3673 GN=LOC111024010 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.1e-11
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 124 LYVFGGGSGY-AWYNTVELYNLENDQRTLCP-LNVEKGSLGLGGGVTVGNKLFAVG 178
           LYVFGGG+GY AWYNTVE YNLE DQ TL P L+ EKGSL   GGVT+GNKLFA+G
Sbjct: 430 LYVFGGGNGYSAWYNTVESYNLETDQWTLGPSLSAEKGSL---GGVTIGNKLFAIG 482

[Close]
BLAST of Spg033416 vs. ExPASy TrEMBL
Match: A0A5D3DNS2 (Kelch-like protein 2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00450 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 0 

Query: 124 LYVFGGGSGYAWYNTVELYNLENDQRTLCP-LNVEKGSLGLGGGVTVGNKLFAV-GSNRL 183
           LYV GGG+G  WYNTVE YNLE DQ TL P LN+ KGSL   GGV++GNKLFA+ G N +
Sbjct: 537 LYVLGGGNGCVWYNTVESYNLETDQWTLSPSLNLAKGSL---GGVSIGNKLFAIGGGNGI 596

Query: 184 EEM 185
           E +
Sbjct: 597 ESL 596

[Close]
BLAST of Spg033416 vs. ExPASy TrEMBL
Match: A0A5A7TLJ1 (Kelch-like protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005610 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 0 

Query: 124 LYVFGGGSGYAWYNTVELYNLENDQRTLCP-LNVEKGSLGLGGGVTVGNKLFAV-GSNRL 183
           LYV GGG+G  WYNTVE YNLE DQ TL P LN+ KGSL   GGV++GNKLFA+ G N +
Sbjct: 427 LYVLGGGNGCVWYNTVESYNLETDQWTLSPSLNLAKGSL---GGVSIGNKLFAIGGGNGI 486

Query: 184 EEM 185
           E +
Sbjct: 487 ESL 486

The following BLAST results are available for this feature:
BLAST of Spg033416 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022982773.14.4e-1274.55influenza virus NS1A-binding protein homolog [Cucurbita maxima] >XP_022982774.1 ... [more]
KAG6580447.14.4e-1274.55Kelch-like protein 8, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7017201.14.4e-1274.55Kelch-like protein 8 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022934311.14.4e-1274.55influenza virus NS1A-binding protein homolog [Cucurbita moschata] >XP_022934312.... [more]
XP_023527355.14.4e-1274.55influenza virus NS1A-binding protein homolog [Cucurbita pepo subsp. pepo] >XP_02... [more]
BLAST of Spg033416 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg033416 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J5H42.2e-1274.55influenza virus NS1A-binding protein homolog OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1F1G52.2e-1274.55influenza virus NS1A-binding protein homolog OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1DU244.1e-1175.00influenza virus NS1A-binding protein homolog OS=Momordica charantia OX=3673 GN=L... [more]
A0A5D3DNS22.0e-1063.49Kelch-like protein 2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7TLJ12.0e-1063.49Kelch-like protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
BLAST of Spg033416 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006652Kelch repeat type 1PFAMPF01344Kelch_1coord: 124..153
e-value: 7.3E-5
score: 22.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
IPR015915Kelch-type beta propellerSUPERFAMILY117281Kelch motifcoord: 123..177

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg033416.1Spg033416.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034976 response to endoplasmic reticulum stress
molecular_function GO:0005515 protein binding