Spg031035 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg031035
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold10: 22497758 .. 22506708 (+)
RNA-Seq Expression	Spg031035
Synteny	Spg031035

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCCTCTTCAATTCACTTGGGTAGTTACATAAGCCCTTCTGAGTTCAAATATTCTAAGGTTAGCCCTAGATGCTTTATCGTGAGGATCTCCTCTATATGGATGAAAATCGATTTCTCGATGAGTTTTTTTTATCACCAACCGGATATCTGACTTTTCGCTTGAAACTAATTTAATATCCTGCAAAGAGATTGTTCTAGTTTTTGCCACTCGCTTTGCTTGTGTGAAATGACTTAGGTCTTAACCTCAACCATAAGTGTAGTTTACCATTTTGAAGCCCCTGTGTGAGTGTTTTTCTCACTTAGCCATTTATGTGGCACCCGTGATAAGACCATAGGGTCGGTCTCGGCCTCAAGTCCCTTAAATGTTGAAATATGGGCTCCCACCTTCATTTGGTTATGGTCGGCTTCGAACTTCAGATGATTAGCTTCAGCCCTCGGAGGGTTAGTCTCGGTTCCGTTTTCTAACCTCCTCGGTCAACTCTTATTGCCTTTTGTTTGACAGAGAGGCATATCCCCTCTTGCCTTTTGTTTGATAGGGAGTGCATATCCCCTCTTGCCTTTTATTTGATAGGGAGTGCATATCCCCTTTGTCCTTTATCCAAGTAAAGCTTTATTTAAAACATAAAATATAATTGAGTAAAGAGGAGAATGCCTTTAAAGTTTGTGCTCGGCCTCGGCAAGATGTGCTTGGTAGTCCTGGCTTGCGTGACGGGCTCAAGCCAAATGAGATGAATGGGGAGGTTGAGGAACTTTGTCAGCCCGACCGTGCGTGCACTGGATCGGGGAGCAGGGCATCGACCCGACCGTGCGTACACTGGATCTGGGGAGCAGGGCTCGACCCGACCGTGCGTACACTGGATCGAGGAGCAGGGCTCGACCCGACCGTGCGTACACTGGATCGAGGGATGAGGGCTCGGCCTGACTGTGCATACACTAGATCGAGGAGCAGGGCATCGACTCGACCGTGCGTACACTGCTCAAGCCAAATGAGATGAATGGGGAGGTTGAGGAATTTTGTCGGCCCGACTGTGCGTACACTGGATCGGGGAGCAGGGCATCGACTCGACCGTGCGTACACTGGATCGGGCTATGAGGGCTCGGCCCGACCGTGCGTACACTGGATCGGGGAGCAGGACATCGACCCGACCGTGCGTACACTGGATCGGGGGATGAGGGCTCGGCCCGACCGTGCGTACATTGGATCGGGGAGCAGGGCATCGACCCGACCGTGCGTACACTGGATCAGGGGATGAGGGCTCAGCCCGACCGTGCGTACACTGGATCGGGGGAGCGAGGAGGTTGAGAAAATATGTCAAACCCCGTGCATACACTAGGTCGGGACGACTCAGAGAGGCTGGAGATATGGAGGATTAGCTTCGGCTAGAATCAATCCTATCTCATCCACACTTGGTACATCATGTGGAAAAATGCTTTGCACAAACACAGTATAAAAAACTTTATTAAATTTGCAAGTGTTTGCATTGTACAATGGGAAAAAACTATGGACATGTGTTATGCAAAATGAAAATAAATAAGCAATATTGACAACATGCAATTTGCTGTTCTTTCTGACTGTTTTTTATTTAATTAGGGAAACATACTCCCTGTGCAGCCCTTACTCAAGCAAGATTCTTCTCGAAGTAAAAGTCATGCTTGAGTAATCGACGTTGACATACCTTAACGTTTTCATGTCGCATAACTCTCCGAGCTTATTAGCATTTGTTGGCCTCGATCTCCTAAGGATCAACCTCAGTCCCTTGCATGTCGGCTCTATCATTGTTACTGAGACTTCCAACATCATCATTCTTGAGCGTTTGTTGACTCTGCTAAGGTCGTTCCATAAATCAAGTACCTTGGAGAGTATAGGTTTTTCCATTCTTCCAAGGACATTTTGTTGGCTCAGCTACTCAGGCTTTCAGGAGCTCCATTTTGTCTCCTCATGAAATAACATTAGTAGATAACATTATGTCTATGGGAAAAAGACTAGTCATTGATTAAAAATATAAGTATGTTGCGAGTAGCTTTCATTATTATTTCACAATAATTCCATAAAGAAATCTCAGCACATCTATTTTAAATTTTAGCACCTCAATACCAATTTATTCAACCAGAGAAAGCATTTTGAAAAGAAACTTACATCATTTCTCCTTGTTGTAGCATCCAAGTAGTCATTAAATCATTTAACAGATTTTCAATTAAATATTTAACCAAGAAAAATATCAAATTATCAATGCAATTACTGAGCTTTTGACATAAGAAATAACGCGAGAATAATATAAACAAAAGAACTTGTTTTGAGAGAAACAGAAGGCCCAAAGTTAAAATAACAAGAATACATTAGAATTCAAATTGAGTACAACTACCTATGTAAAGATAGAACCACAACACTTTATTCAAAATTCAAACCAAAGGCATGTATATATGTGATCTTTCCATTTGTTCTCTTAACATTGAAAACCTAGACTCGTGATAGCTGTCGTCAAGAACCCATAGTTTTCGTGTATATGAGTTCATCTTACAACTTATATTCTTTATTGAATTTTCTCCAGTAATTTGAATTGAATTCAAATTTTTCTGTTTAAAGAAACCTCTTATTTGCTCAACCCAAAGCAAATAATTGATTGCTTACATGTGTCTTAGTTTCACACACAAGTATCAAAGAAAAAACACATGCTTCTAAAAAGCTACTTTACCTAAAAAAGCAAACGAATCTTCCAATCTACTCAGGCTACCTTAAGAAGAAACCTTAAGAAGAAATCAACAGAACTTCACCATGATGAATTAGGCGATTAGTTCATGATAAGATGTAGAACCAGTACAGAAACACAACAAAAAATGAGTGGAGGAGTCAAATGTGTCGCTTGAGTAAAGAGAACGTCATAGAAAACCTAAAATCATGAATGTATTCAACAAAACCCTAGAAAAGAAGTACTTAACCCCGAATTTTTAAACAAGAGAAAAATGAAAATCAGTTCACCAAATAAAAGTTAACAATCAAAATCACGCCTCTCATAAAGTAAAATCGCAAAGATTTTTGGAACTGCACCTCTTAAATAGTCCTTCAAAATTGGTGATTATATATTCGTAGGGTGCAAGTCAGTTGACTAGTATGCCTCCAATTGTCAAGTTTAATAGTGAGAGGTTCCAAAGGCCAGATGGCAACTTTGATGGTCATGCGGTCCATGGATCTAATGTTTTATTCCTCCAGAACTTTGATGATGCTCAAAGAGGAAGGGTAAACTTTCCTACAGAGTACTCCTCCTTGGATGAATTCCTGGGCCAACTTCAATTAGTGGCCCGCGATCCAATGAAGGAATGTAGCTTTTGAACGTAATTGTCAAATTTTCACCGATTTTTCGAGATTCTTTAATTGTGAGGCATCAACCTTGAGGAGGCCATGGACAAAATTAGTCGTAGGAGGAGAGCACAATTTACTTCTATCGTCTTCCCCACAGACTGCGCCAACTGTTGATGCCAAAATTTGGCCAAGCGACTCAGCTGACCTTCACGTGACATCAACGATAAATTTAACTGAGCTGAGCACCTGTGTGGTGCTTGCCACACCGACTCCGATGCTTAAGTCAGTCGAGAGATCATAAGTGAAGCAAGTAAATTAAGAATTAGGGAGAAGGATTCAATACCTGGTTGAGTTCCCTTACTTTGGGGTTAGTCTCTTCTATTTATAGTTGAAAAGGTTTCAATGAATATTTTTTTGAAATACTTACCAACGACACGAGAAAGAAGCAGGAAGATTATTGCTCGAAATCAAGGCCTACACAAAGAAGAAAATACATGAGCATTCGAAGGCAAATGAAAAAAAAAGAAAAGGAAAATTGAAGAGAAGAGTTTTTTCTCAATACCTAGACTCCTTGCTTGGGTGGCTTTGTGTCTTGATCTATGCAACCTCTTCTATTTATAAAGAAAGAGATTAGGTCAAACCCATAAGGAAAAGGTATTATGAGATTTGATTTTAAAATTGAATTTTATCCCTTATCAAATTAGGAGTGCCAATTCAAATCGTAATCCAAGTGGGAAATTTGATTTAAATCAATTTTGAATAAAAATTCGAATTGGTCCAATTTTAAAGTAAGATAAAATTGGATAAATTTTGAATTTGATTCGATTTAAATTAAATTAAAATTGCTATAGCTAAATTTTTAGCTAAACCTAAATCAAAGGGGCATATTTTAGAATTTAATTCCTCAAACCAAATTTTGGATGAAATTTAACATTACTCCAACTAAAATTTTTCAAGCCTTATTTGAGATTCAAGGTGTTTGAGGTTGAGTTTATCTTGAGATAATTTGGACCTAATTATAATTCGGTCCCAAATTAAACTCGAGTCAAATTCAAAATAGAGTGAAATTACTCCAAATTCAAAGTTACATAGAATTTGGACACAATTGAAATTCAATATGGAATTAAAATCCAGTTGAGATTCAAATTGCAATTTGTTGCCAAGCCAAGTGGATCAAAATTTCGAAAAAAAAGAAGGAAGAAGAAAATTTCGAATTTTGATTAAATTGGCATAACAGATGTGTAAAAAAAAATTGATTCCAAAGAATTTCTTTTCGAGATTCATCCACACATAATTTGTGTCTAAATCTCGAAAAGGGGGCATTTGTTGAAAGAGAAATTTTGACCAATCACAAATTGCCACGTCATTACATGAAATTAATGACAAAATTATAATCAATTAAATTTTGGACCAATTATAAATTGACATGTGTCCCAAATTTAATTTGAAGACAAAGTTGGCCAATTATAAATTTATAGAGCCAAATTTCTATTTGATCAATTAATTAAAATTAAATTGTTTTGATCAAATTAATTAATTTGACCCATTAATTAAAAAAATAATTATTTGGTTCAAATTTGGGTCTTTTAAATATTTGGGTCACATGGTTTTGGGTCAAATATGAACCAGACCCAAGACTAAATAGTTGAACCCAAGACCAATAAAGCCCAAGCCCAAGTTGTTGGCCCAAAAGTCACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCTTCCATTTTAGGGGGTCAGAATTTTGAAGCTCCAAGCCAGAGTCAGAGAATTCAGAGAAACTCCATCAAGATTGAAGACTGAAGACTGAAGACTCCTTGAAATCCATAAGTTTCAAAGTGCTGAACACTTCTTGAAGATTGAAGACTCCCTCAAGATTAGAAGACTTCAAGCTCCAAGAATCCATTGAAGCTTCAGACTCGAGATCAAGCGTTCCAGCCCTCGAGTGAAACACATCCACACACAAGAGAGAGAATCAGAGGATTAACATTAGAGATTGTACATCCACACGCATACAAATATTAATACAAATATACGTTTATTCCACGTGTCTCCATCTTCGAAGTTAAGTGTGAACAAATTGGCACGCCCAGTGGGACCTCTCTACCTCTCATCTCTTTCTCTTGTTAAAAGATCCAACCAACGTGATGGCATCAAAGAAAGCTCCCGCGAAGGTTACAACATCAAGCGACTCTTACACTGGTCCTATCACTCGTAGTCGTTCCCAAGGAATTGAGATTAGGGAGGATCATACTCCTCTTGCTGTTGGAAACAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCTGTCGTTCCAACATCTAAGCTGCCAAAGGATGCACTAAATCCTGATGTGATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATTTGGAGATTGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGATTGAGTCTAGCCAGACCCGTGGTGCAGGAAAGAATGATAAGGGGAAGGCTATCGTGCATGAGGACCAACCGCAACACTCTGCGTCAATGGCCTCTTTGTCTGTCCAACAGCTGCAAGACATGATCATGAATTCCATCAGGGCTCAATATGGTGGACCCACTCAAAGTTCCCTCTTGTATTCTAAACCTTATACAAAGAGGATCGACAATCTCAGACTGCCCGCTGGGTATCAGCCTCTCAAATTCCAACAGTTTGATGGAAAGGGCAACCCAAAGCAGCACATCGCCCACTTTGTTGAAACCTGTGAGAACGCTGGTACTCGGGGAGATTTGCTTGTTAAGCAATTTGTCCGAACACTGAAAGGAAACGCGTTCGATTGGTACACTGACCTGGAGCCTGAGACAATTGACAGTTGGGAACAGATTGAGAGAGAGTTTCTGAATCGCTTCTACAGTACGAGGCGAACAGTTAGTATGACGGAACTCACGAGCACAAAGCAACGGAAGGGTGAACCAGTCATCGACTACATCAACCGTTGGAGAGCCTTGAGTCTCGACTGTAAGGATAGACTCTCCGAGGTATCCTCTGTTGAAATGTGCACCCAAGGCATGCACTGGGGACTTCTTTACATCTTGCAGGGGATAAAACCCCAGACCTTTGAAGAACTGGCGACTCGCGCTCATGATATGGAGTTGAGCATTGCTAGTAGAGGGAACAAAGATCCCGTGGTCCCAGACATGAGGAAGGAAAAGAAGGAAGTCAAAGGCACTGAGAAAGTTACGAAGAATGCCACAAAAGAATCCATGGTCGTCAACACGACCCCTTTGAAATTTTCCTCCAAAGGAAAAGAAAGTAAAATCGATAAGCGAATGGAGACAGGCGAGAGACGTCACCTAACTTTAAAAGAAAGACAAGAAAAGGTGTATCCGTTTCCAGACTCCGACGTCCCAGATATGTTGGAACAACTGTTGGAGAAGCAATTAATTGAACTCCCCGAATGCAAACGACCGGAAGAGTTAGGAAAAGTCAATGATCCTAACTACTGCAAGTATCACTGAGTCATTAGCCATCCAGTGGAGAAATGTTTTGTTTTAAAAGAGCTAATCCTTAAGTTGGCTCGTGAAAAGAAAATTGAGCTGGACCTTGATGAGGTGGCTCAAGCGAATCATGCAACAATAATGGCGAATGTGGGGGATCAAATTCCTTTAATTTCCTCATGTGATTATGAAGAGAGGCTGATTCAATTTGGGACCCTTGATCCTGTAGTGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGCAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAATGTTAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGAAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGACGCTTTCTCGATGATAGTCAAGGAGAAGCCCTTGAAATCGTCACGTGTCACATTGTGGACATGGTGGAAGATGATGATGTCCCTGCTAGTTCCTAGGAAACGGTGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTGATGCGTTGATCGAGTCTGATAGTTCAAACATCCCGACCTCTAAGGCATTCACATGTGCTTCGTGTTGTATGTCTATAGGATTTTCTGATGAAGATTTGTTGTTAGGGTCGAAGCCTCACAATAGACCTTTATTCGTCTCGGGATACATCCGAGAACAGAAGGTTAGTCGGATCCTCATTGATGATGGGTCAGCTGTCAACATAATGCCTAAGTCAACCATGAAGCAGTTAGGCATCTCGATGGGAGAACTATCAAACAGTAAGTTGGTGATTCAAGGTTTCAATCAAGGGGGACAACGAGCGATTGGCATGATACACCTCGAGCTCATCATTGAGGATTTGAAGGCCGATACTTTGTTTCATGTTATAGATTCCAAGACCACTTATAAGCTGCTATTAGGTCGCCCTTGGATCCATGGCAATGGAGTGATAACTTCTACATTGCACCAGTGTTTTAAATTTTATCAAGATGGCATTAAGAAAGTTGAGGCTGACACTAGCCCATTCACAGAAGCTGAATCCCATTTCGCTGATGCAAAATTTTATATGAAGAGCGACAACACAGGGGAAGTTATACCTGCAGAAATCCCCTAGATAAAAAAGAATGACAAGCTCAATTTAGAGCCACAAGTAGATGCAAGGAAGGAAGCTGTTGAGGATGTGAAGGCATCTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAGTGTTCACCTGTCCTACGATACGTCCCTTTATCCCGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTCCAAAAAACATAAAGGTCGGTGACGTTGAAATTCTGAAGGAAAGTTTCACTACGCCTCTTACAAAGATCACAAAGCAAGAGGTTAAGAAACCTGAGGATGACCAGATAAAATCGGTTTTGCCTGACAAACGAACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCGAAAGCAAGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAAGATTTTTGATGAAAGATCTAAGCTCTCTACGACACAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGAACTTGGATATAAGTCGCCCGAGCCAGTTTGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCACATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTCAGTTTTTTGA

mRNA sequence

ATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATTTGGAGATTGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGATTGAGTCTAGCCAGACCCGTGTGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGCAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAATGTTAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGAAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGACGCTTTCTCGATGATAGTCAAGGAGAAGCCCTTGAAATCGTCACGTGTCACATTGTGGACATGGTGGAAGATGATGATGTCCCTGCTACTGTTGAGGATGTGAAGGCATCTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAGTGTTCACCTGTCCTACGATACGTCCCTTTATCCCGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTCCAAAAAACATAAAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGAACTTGGATATAAGTCGCCCGAGCCAGTTTGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCACATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTCAGTTTTTTGA

Coding sequence (CDS)

ATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATTTGGAGATTGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGATTGAGTCTAGCCAGACCCGTGTGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGCAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAATGTTAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGAAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGACGCTTTCTCGATGATAGTCAAGGAGAAGCCCTTGAAATCGTCACGTGTCACATTGTGGACATGGTGGAAGATGATGATGTCCCTGCTACTGTTGAGGATGTGAAGGCATCTGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAGTGTTCACCTGTCCTACGATACGTCCCTTTATCCCGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTCCAAAAAACATAAAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGAACTTGGATATAAGTCGCCCGAGCCAGTTTGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCACATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTCAGTTTTTTGA

Protein sequence

MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETIESSQTRVVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPATVEDVKASDLKKGETSTSLVKPKVVEDEKCSPVLRYVPLSRRKKGESPFTECPKNIKKKLLKEGYSLPTTRKELGYKSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF

Homology

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BLAST of Spg031035 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 8.3e-33
Identity = 143/474 (30.17%), Postives = 190/474 (40.08%), Query Frame = 0


Query: 60  KEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKK 119
           +E T + SQEK   IE+++EGWT+V RRKK+K +  +KESRL+ + +R  K+Q+ K KKK
Sbjct: 460 EEVTPEDSQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKK 519

Query: 120 SRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVT---------------- 179
           +R+ K V EK +DF      +TLA++FP RFL D Q E   +V                 
Sbjct: 520 TRKLKLVHEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTP 579

Query: 180 -CHIVDMVEDD------------------------------------------------- 239
            C  +D  ++D                                                 
Sbjct: 580 YCMSIDFSDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILM 639

Query: 240 --------------------------------------DVP-------------ATVEDV 299
                                                 +VP             A+ E  
Sbjct: 640 EELSNSKLVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESH 699

Query: 300 KASDL---KKGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK--- 335
           K++      K E STS  K  +V DEK S  P+LRYVPLSRRKKGESPF E P+ +K   
Sbjct: 700 KSTGTFHSGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGD 759

[Close]

BLAST of Spg031035 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 2.0e-07
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETIESSQTRVVRFRK 60
           MSVMMAD+  +  MAEMERK+N LMKAV+ERD EI  L+ Q++ RET ESSQT +V+   
Sbjct: 82  MSVMMADITPEAAMAEMERKINFLMKAVEERDHEIIALREQMRTRETAESSQTPIVK--- 141

Query: 61  EATMKG 67
            AT KG
Sbjct: 142 -ATDKG 143

HSP 2 Score: 136.0 bits (341), Expect = 6.1e-28
Identity = 84/191 (43.98%), Postives = 106/191 (55.50%), Query Frame = 0


Query: 189 KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK------------ 248
           K E ST+  K  ++ DEK S  P+LRYVPLSRRKKGESPF E P+ +K            
Sbjct: 203 KSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKRRTKDGFDPKAY 262

Query: 249 -------------------------------KKLLKEGYSLPTTRKELGYKSPEPVCITR 308
                                          KKLL+EG+ +P +RK LGYKSPEP+ ITR
Sbjct: 263 KLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITR 322

Query: 309 KGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQ 335
           KGK KV D NHITV+EVD  +E+E  +QR S F  I P VARA VF+R+ + E + +  Q
Sbjct: 323 KGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAKRKDHQ 382

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BLAST of Spg031035 vs. NCBI nr
Match: KAA0043405.1 (hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 8.0e-28
Identity = 80/160 (50.00%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 188 KKGETSTSLVKPKVVEDEKCSP--VLRYVPLSRRKKGESPFTECPKNIK----------- 247
           +KGE STS  K  ++ DEK S   +LRYVPLSRR+KGESPF + P+ +K           
Sbjct: 70  RKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQGLKVGDMKQPKLSL 129

Query: 248 --KKLLKEGYSLPTTRKELGYKSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQR 307
             KKLL+EG+ +P +RK  GYKSPEP+ I RK K KV D NHITV EVD  +E+E   QR
Sbjct: 130 IQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVGEVDSMEEKEGGSQR 189

Query: 308 ASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSS 333
            S F  IRP V R +VF+R+ V +TE +  Q T+S  + S
Sbjct: 190 ISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRS 229

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BLAST of Spg031035 vs. NCBI nr
Match: TYK28162.1 (uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 6.8e-27
Identity = 84/201 (41.79%), Postives = 106/201 (52.74%), Query Frame = 0


Query: 189 KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK------------ 248
           K E ST+  K  ++ DEK S  P+LRYVPLSRRKKGESPF E P+ +K            
Sbjct: 167 KSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKIDLTEASLPQRR 226

Query: 249 -----------------------------------------KKLLKEGYSLPTTRKELGY 308
                                                    KKLL+EG+ +P +RK LGY
Sbjct: 227 TKDGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGY 286

Query: 309 KSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRII 335
           KSPEP+ ITRKGK KV D NHITV+EVD  +E+E  +QR S F  I P VARA VF+R+ 
Sbjct: 287 KSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLS 346

[Close]

BLAST of Spg031035 vs. NCBI nr
Match: KAA0047672.1 (uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa] >TYK08327.1 uncharacterized protein E5676_scaffold648G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 4.4e-26
Identity = 77/154 (50.00%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 189 KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIKK---KLLKEGYS 248
           K E STS  K  ++ +E  S  P+LRYVPLSR KKGESPF E P+ +K    ++LKE ++
Sbjct: 704 KNEASTSTAKSVILMNENTSNPPILRYVPLSRCKKGESPFVESPQGLKVGDIEVLKESFT 763

Query: 249 L---PTTRKELGYKSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIR 308
           +     T+K LGYKSPEP+ ITRKGK KV D NHITV+EVD  + +E   QR S F  I 
Sbjct: 764 IQLTKITKKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEGKEGHSQRTSAFDRIS 823

Query: 309 PPVARASVFQRIIVNETEEESAQPTNSSTRSSVF 335
           P VARA VF+R+ + E + +  Q T++  R S F
Sbjct: 824 PHVARAPVFERLSMTEAKRKDHQSTSNLDRRSAF 857

[Close]

BLAST of Spg031035 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.0e-33
Identity = 143/474 (30.17%), Postives = 190/474 (40.08%), Query Frame = 0


Query: 60  KEATMKGSQEKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKK 119
           +E T + SQEK   IE+++EGWT+V RRKK+K +  +KESRL+ + +R  K+Q+ K KKK
Sbjct: 460 EEVTPEDSQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKK 519

Query: 120 SRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVT---------------- 179
           +R+ K V EK +DF      +TLA++FP RFL D Q E   +V                 
Sbjct: 520 TRKLKLVHEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTP 579

Query: 180 -CHIVDMVEDD------------------------------------------------- 239
            C  +D  ++D                                                 
Sbjct: 580 YCMSIDFSDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILM 639

Query: 240 --------------------------------------DVP-------------ATVEDV 299
                                                 +VP             A+ E  
Sbjct: 640 EELSNSKLVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESH 699

Query: 300 KASDL---KKGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK--- 335
           K++      K E STS  K  +V DEK S  P+LRYVPLSRRKKGESPF E P+ +K   
Sbjct: 700 KSTGTFHSGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGD 759

[Close]

BLAST of Spg031035 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.9e-08
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1   MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETIESSQTRVVRFRK 60
           MSVMMAD+  +  MAEMERK+N LMKAV+ERD EI  L+ Q++ RET ESSQT +V+   
Sbjct: 82  MSVMMADITPEAAMAEMERKINFLMKAVEERDHEIIALREQMRTRETAESSQTPIVK--- 141

Query: 61  EATMKG 67
            AT KG
Sbjct: 142 -ATDKG 143

HSP 2 Score: 136.0 bits (341), Expect = 3.0e-28
Identity = 84/191 (43.98%), Postives = 106/191 (55.50%), Query Frame = 0


Query: 189 KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK------------ 248
           K E ST+  K  ++ DEK S  P+LRYVPLSRRKKGESPF E P+ +K            
Sbjct: 203 KSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKRRTKDGFDPKAY 262

Query: 249 -------------------------------KKLLKEGYSLPTTRKELGYKSPEPVCITR 308
                                          KKLL+EG+ +P +RK LGYKSPEP+ ITR
Sbjct: 263 KLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITR 322

Query: 309 KGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETEEESAQ 335
           KGK KV D NHITV+EVD  +E+E  +QR S F  I P VARA VF+R+ + E + +  Q
Sbjct: 323 KGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAKRKDHQ 382

[Close]

BLAST of Spg031035 vs. ExPASy TrEMBL
Match: A0A5A7TPR5 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00040 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-28
Identity = 80/160 (50.00%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 188 KKGETSTSLVKPKVVEDEKCSP--VLRYVPLSRRKKGESPFTECPKNIK----------- 247
           +KGE STS  K  ++ DEK S   +LRYVPLSRR+KGESPF + P+ +K           
Sbjct: 70  RKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQGLKVGDMKQPKLSL 129

Query: 248 --KKLLKEGYSLPTTRKELGYKSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQR 307
             KKLL+EG+ +P +RK  GYKSPEP+ I RK K KV D NHITV EVD  +E+E   QR
Sbjct: 130 IQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVGEVDSMEEKEGGSQR 189

Query: 308 ASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSS 333
            S F  IRP V R +VF+R+ V +TE +  Q T+S  + S
Sbjct: 190 ISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRS 229

[Close]

BLAST of Spg031035 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.3e-27
Identity = 84/201 (41.79%), Postives = 106/201 (52.74%), Query Frame = 0


Query: 189 KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIK------------ 248
           K E ST+  K  ++ DEK S  P+LRYVPLSRRKKGESPF E P+ +K            
Sbjct: 167 KSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQGLKIDLTEASLPQRR 226

Query: 249 -----------------------------------------KKLLKEGYSLPTTRKELGY 308
                                                    KKLL+EG+ +P +RK LGY
Sbjct: 227 TKDGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGY 286

Query: 309 KSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRII 335
           KSPEP+ ITRKGK KV D NHITV+EVD  +E+E  +QR S F  I P VARA VF+R+ 
Sbjct: 287 KSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLS 346

[Close]

BLAST of Spg031035 vs. ExPASy TrEMBL
Match: A0A5D3C8N8 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001250 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-26
Identity = 77/154 (50.00%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 189 KGETSTSLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPKNIKK---KLLKEGYS 248
           K E STS  K  ++ +E  S  P+LRYVPLSR KKGESPF E P+ +K    ++LKE ++
Sbjct: 704 KNEASTSTAKSVILMNENTSNPPILRYVPLSRCKKGESPFVESPQGLKVGDIEVLKESFT 763

Query: 249 L---PTTRKELGYKSPEPVCITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIR 308
           +     T+K LGYKSPEP+ ITRKGK KV D NHITV+EVD  + +E   QR S F  I 
Sbjct: 764 IQLTKITKKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEGKEGHSQRTSAFDRIS 823

Query: 309 PPVARASVFQRIIVNETEEESAQPTNSSTRSSVF 335
           P VARA VF+R+ + E + +  Q T++  R S F
Sbjct: 824 PHVARAPVFERLSMTEAKRKDHQSTSNLDRRSAF 857

The following BLAST results are available for this feature:

BLAST of Spg031035 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061113.1	8.3e-33	30.17	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]
KAA0061113.1	2.0e-07	60.61	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]
KAA0043405.1	8.0e-28	50.00	hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]	[more]
TYK28162.1	6.8e-27	41.79	uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]	[more]
KAA0047672.1	4.4e-26	50.00	uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of Spg031035 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg031035 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BY54	4.0e-33	30.17	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BY54	9.9e-08	60.61	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TPR5	3.9e-28	50.00	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DXC7	3.3e-27	41.79	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3C8N8	2.1e-26	50.00	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00125...	[more]

BLAST of Spg031035 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg031035.1	Spg031035.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process