Spg030464 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030464
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationscaffold6: 30824569 .. 30827116 (-)
RNA-Seq ExpressionSpg030464
SyntenySpg030464
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGAAAGGAAAGAAAAGAAAAGGAAAAGGAAAAGGAAAATGGAAGGAAAAAAAAAAAGAGAGAAAAGAAATCAGCAAAGAAAAAAAAAAAGAGAAAAGAAAGGAAGTGGAAATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTTAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGATTTGATTTTATTGAAAGTTAGTTCATTTTCTAACAAATTTCATGAAGGAAGCTTGACCTAAATCGTATGAGAATTGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTATCTACAACTTTCATGAAGAATTCGTGAGCCCAAAATGACTTTAAGTAGGTTTAATGTCAGGAGGAAGATAAAGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGACTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTTTTCATTTCTTCGGGTAAGTTGTAGAGTGTTAGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTTAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGATATAGAATCTGGAAAATCTGGAAAGTAGAATTGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTGAGTGACAAAATGAATTTCGAAAATGGTTTCCAACGGTTGTTCATGTTTAGATATTTACATGCTTTTCTATGAATGATACATGGTTTTTATGAACAGTTTCAAGCATAAGTTTTGAGCTGAGATTTTCTAACGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGTAAAGTGTTTGTTAGCAAGTATTTTTTTTTTTAAATGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCACACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACTTACGAGATATTTTAGAAAGCCTTTTTCATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATCCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGCAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTATATCAGGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATTTATTATAAAAGGATTACAAAACTTGAGTTTTAGGACATAAACCCCAACAGATTTGACATGTGTTTGCATGAGTTTATTGGATGTGGATTGAGTATGAGTAAATTAGAAACTTTTGGATGAGTTTGAGGGATTCTAATGTACACTTATTTGTTTGACTTAGAGTGATGCCAACTGAGGTTTTGATTCATAGAGGAACATTCTCATCAAGATCATCTCTTTGGGAATTCATTGCTTTAGCAAATGTTCTGTTTTTCAAGGACACCTCTACCTTCCAACCATCCATTTCTTAA

mRNA sequence

ATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGTGATGCCAACTGAGGTTTTGATTCATAGAGGAACATTCTCATCAAGATCATCTCTTTGGGAATTCATTGCTTTAGCAAATGTTCTGTTTTTCAAGGACACCTCTACCTTCCAACCATCCATTTCTTAA

Coding sequence (CDS)

ATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGTGATGCCAACTGAGGTTTTGATTCATAGAGGAACATTCTCATCAAGATCATCTCTTTGGGAATTCATTGCTTTAGCAAATGTTCTGTTTTTCAAGGACACCTCTACCTTCCAACCATCCATTTCTTAA

Protein sequence

MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPTEVLIHRGTFSSRSSLWEFIALANVLFFKDTSTFQPSIS
Homology
[Close]
BLAST of Spg030464 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 39/62 (62.90%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 1   MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT-EVLIHRGTFSS 60
           MS LH V    F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGG + T E    RG   +
Sbjct: 139 MSELHLV----FNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTTWESSTQRGQIEA 196

Query: 61  RS 62
            S
Sbjct: 199 GS 196

[Close]
BLAST of Spg030464 vs. NCBI nr
Match: KAA0025361.1 (uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa] >TYK23441.1 uncharacterized protein E5676_scaffold605G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 1   MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG 45
           MSGLH V    F+VS+GST IVRGDDVCWLHAVFRAK AGGPGG
Sbjct: 63  MSGLHLV----FNVSVGSTWIVRGDDVCWLHAVFRAKTAGGPGG 102

[Close]
BLAST of Spg030464 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-09
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 1   MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT 49
           MS LH V    F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGG + T
Sbjct: 154 MSELHLV----FNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTT 197

[Close]
BLAST of Spg030464 vs. NCBI nr
Match: TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-09
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 1   MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGP-GGVMP 48
           MSGLH V    F++S+ STGIVRGDDVCWLHAVFRAK  GGP GGVMP
Sbjct: 63  MSGLHLV----FNISVESTGIVRGDDVCWLHAVFRAKTTGGPRGGVMP 106

[Close]
BLAST of Spg030464 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 6.2e-09
Identity = 35/48 (72.92%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 1   MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT 49
           MS LH V    FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGG + T
Sbjct: 139 MSRLHLV----FSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTT 182

[Close]
BLAST of Spg030464 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.1e-10
Identity = 39/62 (62.90%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 1   MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT-EVLIHRGTFSS 60
           MS LH V    F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGG + T E    RG   +
Sbjct: 139 MSELHLV----FNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTTWESSTQRGQIEA 196

Query: 61  RS 62
            S
Sbjct: 199 GS 196

[Close]
BLAST of Spg030464 vs. ExPASy TrEMBL
Match: A0A5D3DIE3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00440 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 1   MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG 45
           MSGLH V    F+VS+GST IVRGDDVCWLHAVFRAK AGGPGG
Sbjct: 63  MSGLHLV----FNVSVGSTWIVRGDDVCWLHAVFRAKTAGGPGG 102

[Close]
BLAST of Spg030464 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 1   MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT 49
           MS LH V    F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGG + T
Sbjct: 154 MSELHLV----FNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTT 197

[Close]
BLAST of Spg030464 vs. ExPASy TrEMBL
Match: A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 1   MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGP-GGVMP 48
           MSGLH V    F++S+ STGIVRGDDVCWLHAVFRAK  GGP GGVMP
Sbjct: 63  MSGLHLV----FNISVESTGIVRGDDVCWLHAVFRAKTTGGPRGGVMP 106

[Close]
BLAST of Spg030464 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-09
Identity = 35/48 (72.92%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 1   MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT 49
           MS LH V    FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGG + T
Sbjct: 139 MSRLHLV----FSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTT 182

The following BLAST results are available for this feature:
BLAST of Spg030464 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11835.11.3e-0962.90uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa][more]
KAA0025361.12.1e-0979.55uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa] >TYK... [more]
KAA0058280.12.8e-0972.92uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa][more]
TYK01041.12.8e-0975.00uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa][more]
KAA0062409.16.2e-0972.92reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Spg030464 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg030464 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CJX36.1e-1062.90CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3DIE31.0e-0979.55Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7UT171.4e-0972.92CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3BMJ41.4e-0975.00Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7V9N33.0e-0972.92Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
BLAST of Spg030464 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030464.1Spg030464.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0008270 zinc ion binding