Spg030359 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030359
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold6: 26714701 .. 26716920 (-)
RNA-Seq Expression	Spg030359
Synteny	Spg030359

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTTGGTAATTTAAAAGAAGAAAGGAATTAAAGGACATGAATTAAAGGAAAAGAAAAAAAGGAAAATTAAATAGGAAAAAAAAAGAAAGAAAGAAAATGGGAAAAGACAGCAAAAAACCCACCACCGCCTAAGCCAAAACTCCAGCCCATTTTCAGTCCTTTCCAGCCACATTTCTCATCATTTTCCATCAAAAATTTAGAGAATTCGAGGGAGAGAGTGAAGGAAGTAGAAGAAGAAGGTTTCTAGGGTTTTGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAGGCAGCCATATCAGAATCTGGGTTCAACCTGCCTATCTTTGGTTTTTGACTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTGAGGTTTTATTTTCTTGAAAGTTAATCAATTTTCTAACAAATTTCATGAAGGAAGCTTGAGCTAAATCTGATGAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGAATTTTCGTGCAAACCTGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGATTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGTTTGGAAAGCTGATTCAATTTCCTATAACTTTAATGAAGAATTTGTGAGCCAAAAATGACTTGAAGTAGTTATAATTTCAGGAGAAAGATAGAGGGTAGCAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTTTGGACAAATTGGTTGGTAATCTCGTTTTCAGTTCTTCAGGTAAGTTGTAGAGTGTTCGACAATGAAGAGTTTGATATATAGTACATTAATTTTAGTTAAGTATTGAGGAAGTTATGGGTGCTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGGAAAGTAGAATGTGAAGTGTGATTTTTGATTCAAATGTTTAGAATTCATGAGCATGGAAATAGGTCATGAATTCTAAAATTGTTTCCAAACGGTTGTTCATGTTTAGATGTTTTACATGCTTTCTATGAATGATACATGATTTCTATGAACGGTTTCAAGCATAAGTTTTAAGCTTAGATTTTCTAATGAGGTTTATATACGAGCACGTGGTTAATGACTTAATGAAAAGTAGTTGAAACGATATCATTTAAAGTAAAGTATGTATTAGCAAGTACTGTTTAAAGATTTTCGATTTTTCACGAGCAAGTGAGTAAGCTTGAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTATTTTTCTGAGATTTCTTATGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACACCATGACAGCGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAGAGCTGGTAAACGTTGGTTGTACTGGGCGTGCCCAACACAACGTGGATTTGTCATGTTAGTTAAGATGTTTTATATAATTGATATGCCTTGCTAGATTTTAATGACGTACTTGCGGGTTATTTGAGAAAGCTTCTATTATTTCACGTTTATGTTAAACGCTTTGATTGAACTGATTTATACGTTTAAAGGTTTATCACGTGTTCTGATTTCCAGACTTACAGTTCTAAATTTAGTCACTCATTGGGCTTCGTAGCTCACTCTTTCAAAATGTTTTTCCACTTTTCAGGTAGAGGTCGAGCTCTTGGTGCCTGATACACAGTCAACGTCTGCTGAAAGTTCCAGATCAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTGTAAGGATTGGATAATTTACAGTTTGTGTAGGTTCTAGAGGTCGTGGTTGTATAAACCCCAGTTGAATATGTTTTTGGTTGTGATATCTAAATCAGGTTATTTTCCAAACCGAGTTATGTCAGGGCTGCACCTCATGTATGTTAAAAGTTTTTTAGGGATTCCGCTGTGTTGTGTTTCATGTAGAATATTTTATATCTAAGATTAGAATGTTTATCAGGTTCAACGTTTCAGGAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACACCATCTTTCGGACTAAGCTAGCAGGTGGTCCGGGTAGGGGTGTGACAGATAGATTTCGATTAACCGGAGTTTATCAGCGATTGACACTGATAGACTCTGAATAA

mRNA sequence

ATGGTTTTTGAAATGGAAAACAGAGCACAGAATTTTCGTGCAAACCTGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGATTGTACAAGTTGAATCAGAAGCTCTATTTGTTCTTCAGGTAGAGGTCGAGCTCTTGGTGCCTGATACACAGTCAACGTCTGCTGAAAGTTCCAGATCAAGTTCCAGTTCAACGTTTCAGGAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACACCATCTTTCGGACTAAGCTAGCAGGTGGTCCGGGTAGGGGTGTGACAGATAGATTTCGATTAACCGGAGTTTATCAGCGATTGACACTGATAGACTCTGAATAA

Coding sequence (CDS)

ATGGTTTTTGAAATGGAAAACAGAGCACAGAATTTTCGTGCAAACCTGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGATTGTACAAGTTGAATCAGAAGCTCTATTTGTTCTTCAGGTAGAGGTCGAGCTCTTGGTGCCTGATACACAGTCAACGTCTGCTGAAAGTTCCAGATCAAGTTCCAGTTCAACGTTTCAGGAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACACCATCTTTCGGACTAAGCTAGCAGGTGGTCCGGGTAGGGGTGTGACAGATAGATTTCGATTAACCGGAGTTTATCAGCGATTGACACTGATAGACTCTGAATAA

Protein sequence

MVFEMENRAQNFRANLEDLWFSLVFRAFWIVQVESEALFVLQVEVELLVPDTQSTSAESSRSSSSSTFQEGQQVSLEEDDVRWLHTIFRTKLAGGPGRGVTDRFRLTGVYQRLTLIDSE

Homology

[Close]

BLAST of Spg030359 vs. NCBI nr
Match: TYK00845.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-06
Identity = 39/75 (52.00%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 44  EVELLVPDTQSTSAESSRSSSSSTFQEGQQVSLEEDDVRWLHTIFRTKLAGGPGRGVTDR 103
           E+EL VPDT STSAESS S+S S         +  DDV WLH IFR K+ GGPG GVT  
Sbjct: 66  EIELPVPDTLSTSAESSGSNSRSA------GIVRGDDVCWLHAIFRAKIVGGPGGGVTTW 125

Query: 104 FRLTGVYQRLTLIDS 119
              T  YQ+ T  +S
Sbjct: 126 SHAT-TYQQTTQAES 133

[Close]

BLAST of Spg030359 vs. NCBI nr
Match: TYK01784.1 (hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-05
Identity = 35/65 (53.85%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 43  VEVELLVPDTQSTSAESSRSSSSSTFQEGQQVSLEEDDVRWLHTIFRTKLAGGPGRGVTD 102
           VE+ELLVPDT  TSAESS S S S         +  DDV WLH +FR K  GGPG GVT 
Sbjct: 693 VEIELLVPDTLPTSAESSESKSRSV------GIVRGDDVCWLHVVFRAKTVGGPGVGVTI 751

Query: 103 RFRLT 108
            +  T
Sbjct: 753 TYPTT 751

[Close]

BLAST of Spg030359 vs. NCBI nr
Match: KAA0052217.1 (hypothetical protein E6C27_scaffold207G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-05
Identity = 35/65 (53.85%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 43  VEVELLVPDTQSTSAESSRSSSSSTFQEGQQVSLEEDDVRWLHTIFRTKLAGGPGRGVTD 102
           VE+ELLVPDT  TSAESS S S S         +  DDV WLH +FR K  GGPG GVT 
Sbjct: 693 VEIELLVPDTLPTSAESSESKSRSV------GIVRGDDVCWLHVVFRAKTVGGPGVGVTI 751

Query: 103 RFRLT 108
            +  T
Sbjct: 753 TYPTT 751

[Close]

BLAST of Spg030359 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-05
Identity = 34/59 (57.63%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 43  VEVELLVPDTQSTSAESSRSSSSSTFQEGQQVSLEEDDVRWLHTIFRTKLAGGPGRGVT 102
           VE+EL VPDT  TSAES  S+S ST        +  DDV WLH +FR K AGGPG GVT
Sbjct: 88  VEIELPVPDTLPTSAESFESNSRST------GIVRGDDVCWLHAVFRAKTAGGPGGGVT 140

[Close]

BLAST of Spg030359 vs. NCBI nr
Match: KAA0067117.1 (hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ97479.1 hypothetical protein E5676_scaffold598G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-05
Identity = 37/89 (41.57%), Postives = 46/89 (51.69%), Query Frame = 0


Query: 43  VEVELLVPDTQSTSAESSRSSSSSTFQ--------------------------EGQQVSL 102
           VE+EL VPDT  TSAES  S+SS+  +                          EG    +
Sbjct: 128 VEIELPVPDTLPTSAESFGSNSSTWLELYFEFVHVEMLFYKPSDVRAASYVCWEGSAGIV 187

Query: 103 EEDDVRWLHTIFRTKLAGGPGRGVTDRFR 106
             DDV WLHT+FR K+AGGPG GVT+R +
Sbjct: 188 RGDDVCWLHTVFRAKIAGGPGGGVTERIQ 216

[Close]

BLAST of Spg030359 vs. ExPASy TrEMBL
Match: A0A5D3BNX1 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00060 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 39/75 (52.00%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 44  EVELLVPDTQSTSAESSRSSSSSTFQEGQQVSLEEDDVRWLHTIFRTKLAGGPGRGVTDR 103
           E+EL VPDT STSAESS S+S S         +  DDV WLH IFR K+ GGPG GVT  
Sbjct: 66  EIELPVPDTLSTSAESSGSNSRSA------GIVRGDDVCWLHAIFRAKIVGGPGGGVTTW 125

Query: 104 FRLTGVYQRLTLIDS 119
              T  YQ+ T  +S
Sbjct: 126 SHAT-TYQQTTQAES 133

[Close]

BLAST of Spg030359 vs. ExPASy TrEMBL
Match: A0A5A7UCL6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00280 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-06
Identity = 35/65 (53.85%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 43  VEVELLVPDTQSTSAESSRSSSSSTFQEGQQVSLEEDDVRWLHTIFRTKLAGGPGRGVTD 102
           VE+ELLVPDT  TSAESS S S S         +  DDV WLH +FR K  GGPG GVT 
Sbjct: 693 VEIELLVPDTLPTSAESSESKSRSV------GIVRGDDVCWLHVVFRAKTVGGPGVGVTI 751

Query: 103 RFRLT 108
            +  T
Sbjct: 753 TYPTT 751

[Close]

BLAST of Spg030359 vs. ExPASy TrEMBL
Match: A0A5D3BRJ2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00120 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-06
Identity = 35/65 (53.85%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 43  VEVELLVPDTQSTSAESSRSSSSSTFQEGQQVSLEEDDVRWLHTIFRTKLAGGPGRGVTD 102
           VE+ELLVPDT  TSAESS S S S         +  DDV WLH +FR K  GGPG GVT 
Sbjct: 693 VEIELLVPDTLPTSAESSESKSRSV------GIVRGDDVCWLHVVFRAKTVGGPGVGVTI 751

Query: 103 RFRLT 108
            +  T
Sbjct: 753 TYPTT 751

[Close]

BLAST of Spg030359 vs. ExPASy TrEMBL
Match: A0A5A7VIY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold598G00400 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 37/89 (41.57%), Postives = 46/89 (51.69%), Query Frame = 0


Query: 43  VEVELLVPDTQSTSAESSRSSSSSTFQ--------------------------EGQQVSL 102
           VE+EL VPDT  TSAES  S+SS+  +                          EG    +
Sbjct: 128 VEIELPVPDTLPTSAESFGSNSSTWLELYFEFVHVEMLFYKPSDVRAASYVCWEGSAGIV 187

Query: 103 EEDDVRWLHTIFRTKLAGGPGRGVTDRFR 106
             DDV WLHT+FR K+AGGPG GVT+R +
Sbjct: 188 RGDDVCWLHTVFRAKIAGGPGGGVTERIQ 216

[Close]

BLAST of Spg030359 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 34/59 (57.63%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 43  VEVELLVPDTQSTSAESSRSSSSSTFQEGQQVSLEEDDVRWLHTIFRTKLAGGPGRGVT 102
           VE+EL VPDT  TSAES  S+S ST        +  DDV WLH +FR K AGGPG GVT
Sbjct: 88  VEIELPVPDTLPTSAESFESNSRST------GIVRGDDVCWLHAVFRAKTAGGPGGGVT 140

The following BLAST results are available for this feature:

BLAST of Spg030359 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00845.1	2.3e-06	52.00	zf-CCHC domain-containing protein [Cucumis melo var. makuwa]	[more]
TYK01784.1	1.5e-05	53.85	hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]	[more]
KAA0052217.1	1.5e-05	53.85	hypothetical protein E6C27_scaffold207G00280 [Cucumis melo var. makuwa]	[more]
KAA0060199.1	4.4e-05	57.63	uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0067117.1	4.4e-05	41.57	hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ9747...	[more]

BLAST of Spg030359 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030359 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BNX1	1.1e-06	52.00	Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UCL6	7.4e-06	53.85	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3BRJ2	7.4e-06	53.85	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7VIY9	2.1e-05	41.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BAD1	2.1e-05	57.63	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Spg030359 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030359.1	Spg030359.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003824	catalytic activity