Spg029764 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg029764
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold6: 9095667 .. 9097468 (-)
RNA-Seq ExpressionSpg029764
SyntenySpg029764
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAGCAAGAATGTTAGTAGACCACTCGAGACTAAATGTGGGAGAATCCTTGGTGTTGTTTCCACAAAGTCTCTTGGGAACTACCTTGGGATGCCATCCACTAACAACAAAAGCAAAAATAGGATGTTCACTAAGATCAAAGATAGTGTTTGGAAAGTGCTCCAAAGCTGGAAGGAAAAGCTTTTCTCAGCGGGTGGCAAAGAGGTTTTGATCAAAGCGGTGGCTCAAGCCATCCCGGTGTACACTATGAGTTGCTTCAGGCTTCCAAATGGTATTTGCAAAGAAATCAACAGCATTTGCTCCAAGTTTTGGTGGGGCTCCACTAGTGGGAAAAGGAAAATTCATTGGAAAAGCTAGAAGTTTTTGTGCAAGAGCAAGGAGATGGGCGGTTTAGGTTTTAGAGATATCCTCTCTTTAACCAAGCCATGCTTGCTACATTGAGTTGGCGTGTTATCAAAGACCCTTCCAGTCTTCTTGCTAGAACGTTGAAAGGAAGATATTTTCATGACAAACCGTTCCTTGAGGCCTCTTTGGGTTCCAATCCTTCCCTCACTTGGAAGAGCATCATGTGGGGAAAGACTTGTTCCTTAAAGGATATCGGTGGAGAGTGGGGAATGGAAAAAGTACATCGAGATTGATAAAGACCCTTGGATCAATAGAGGGCAGGCCATGATTCCTAGGCTTACCGGTGATGATTTAAAGGGCAGCAAGGTCAATAGCCTTATTGATGATAACAACAATTGGACAGAAGAAAAAGTGAGAGCCCATTTCAATCGGGAAGATGCTAATTACATCCTAAACACTCCCCTTGGGGATCCTAGTCCTAAGGATGAAATCATTTGGAGCCTTGACAAGAAAGGGATCTTTAAAGTTAAGAGTGCCTACCATTTGGCCCTCTTTTGCTCATCAGTTAGTGAGACTTCTGTTTCCGACCCTAGTAAACTGAAATCGGTGTGGCAGAGGCTGTGGAAAATTAAATCGATCCCAAAGGCCAAAATATGCACATGGAAATTTCTCAATGACATTCTTCCTAACATCCCCAATCTCCAAAAGAAAAACATTGATTCTAATCCCCTCTGTGTGTTGTGCAGGAAAAACAAGGAGTCTACAAGTCATACTTTTTGGGGCTGCAAGGTAGCTATTGAGATATGGAACCAGTTTATTCCCTCCTCATGCAGAGAAGATTGGACAAGCTTGGATTTCTGGAGCTAGTTGGTTAAGAAGCGGAGTGAGAAGGAGTTAAAGGTTGCTGTCATCCTAATTTGGAGTATATGGACTCTCAGGAACAAAATTCTCAATGACCCAAATAAATCAAAACCAGAGTCGATACAGATTTTCAATCAAATCAGCAGGAGCATGCATGATCTTGAAGGAAAGAATAGGCCTTACCAGTCCCCTGTTGATTTGGGGAGATGCGAGAGCTTCCGGAAGTCAGGTTTCTTGGAATCCCCGCCCCAAAACTGCTGGAAGCTAAATTCAAATGCCTCTTGGAATGAATCAGGCAGAGGTGGTTTAGGTTGGATCGTTCGTGACTCCCACGGGTCTCCCATCTGCGCCGGAATGAAATCAGTTACTCAACTTTGGCCCATTAAAGTGCTCGAAGCGAAGGTGATGTGGGAAGGTCTGAAATCATTGCTTACCTTGTCTGTAGACCGCCTCTGATTGAAGCAGAGTCTGACTGCTTAGAGCTCATCGCCGCCTTTAATGAAGATGAAGATGATCAATCGGAGATGAAGAGTTGCACTGAAGCTATTCGTCTCCTGTTCCCTGATCAGGGAGTGCTCGTCTTCAAGCACTGA

mRNA sequence

ATGACGAGCAAGAATGTCAATAGCCTTATTGATGATAACAACAATTGGACAGAAGAAAAAGTGAGAGCCCATTTCAATCGGGAAGATGCTAATTACATCCTAAACACTCCCCTTGGGGATCCTAGTCCTAAGGATGAAATCATTTGGAGCCTTGACAAGAAAGGGATCTTTAAAGTTAAGAGTGCCTACCATTTGGCCCTCTTTTGCTCATCAGTTAGTGAGACTTCTGTTTCCGACCCTAGTAAACTGAAATCGGAAAAACAAGGAGTCTACAAGAACAAAATTCTCAATGACCCAAATAAATCAAAACCAGAGTCGATACAGATTTTCAATCAAATCAGCAGGAGCATGCATGATCTTGAAGGAAAGAATAGGCCTTACCAGTCCCCTGTTGATTTGGGGAGATGCGAGAGCTTCCGGAAGTCAGGTTTCTTGGAATCCCCGCCCCAAAACTGCTGGAAGCTAAATTCAAATGCCTCTTGGAATGAATCAGGCAGAGGTGATGTGGGAAGGTCTGAAATCATTGCTTACCTTGTCTGTAGACCGCCTCTGATTGAAGCAGAGTCTGACTGCTTAGAGCTCATCGCCGCCTTTAATGAAGATGAAGATGATCAATCGGAGATGAAGAGTTGCACTGAAGCTATTCGTCTCCTGTTCCCTGATCAGGGAGTGCTCGTCTTCAAGCACTGA

Coding sequence (CDS)

ATGACGAGCAAGAATGTCAATAGCCTTATTGATGATAACAACAATTGGACAGAAGAAAAAGTGAGAGCCCATTTCAATCGGGAAGATGCTAATTACATCCTAAACACTCCCCTTGGGGATCCTAGTCCTAAGGATGAAATCATTTGGAGCCTTGACAAGAAAGGGATCTTTAAAGTTAAGAGTGCCTACCATTTGGCCCTCTTTTGCTCATCAGTTAGTGAGACTTCTGTTTCCGACCCTAGTAAACTGAAATCGGAAAAACAAGGAGTCTACAAGAACAAAATTCTCAATGACCCAAATAAATCAAAACCAGAGTCGATACAGATTTTCAATCAAATCAGCAGGAGCATGCATGATCTTGAAGGAAAGAATAGGCCTTACCAGTCCCCTGTTGATTTGGGGAGATGCGAGAGCTTCCGGAAGTCAGGTTTCTTGGAATCCCCGCCCCAAAACTGCTGGAAGCTAAATTCAAATGCCTCTTGGAATGAATCAGGCAGAGGTGATGTGGGAAGGTCTGAAATCATTGCTTACCTTGTCTGTAGACCGCCTCTGATTGAAGCAGAGTCTGACTGCTTAGAGCTCATCGCCGCCTTTAATGAAGATGAAGATGATCAATCGGAGATGAAGAGTTGCACTGAAGCTATTCGTCTCCTGTTCCCTGATCAGGGAGTGCTCGTCTTCAAGCACTGA

Protein sequence

MTSKNVNSLIDDNNNWTEEKVRAHFNREDANYILNTPLGDPSPKDEIIWSLDKKGIFKVKSAYHLALFCSSVSETSVSDPSKLKSEKQGVYKNKILNDPNKSKPESIQIFNQISRSMHDLEGKNRPYQSPVDLGRCESFRKSGFLESPPQNCWKLNSNASWNESGRGDVGRSEIIAYLVCRPPLIEAESDCLELIAAFNEDEDDQSEMKSCTEAIRLLFPDQGVLVFKH
Homology
BLAST of Spg029764 vs. NCBI nr
Match: XP_040363828.1 (uncharacterized protein LOC112169513 [Rosa chinensis])

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-06
Identity = 47/130 (36.15%), Postives = 73/130 (56.15%), Query Frame = 0

Query: 4   KNVNSLIDDNNNWTEEKVRAHFNREDANYILNTPLGDPSPKDEIIWSLDKKGIFKVKSAY 63
           + VN LI   NNW E KVR+ F  ++A  IL+ PL +  P+D + W L+KK +F VKSAY
Sbjct: 731 QTVNELIIPPNNWDEHKVRSIFVPDEAAAILSIPLSNRQPEDRLTWHLEKKCMFTVKSAY 790

Query: 64  HLALFCSSVSETSVSDPSKLKSEKQGVYKNKILND--PNKSKPESIQIFNQISRSMHDLE 123
           H A       + S   PS + +++  V+K KI N   P+ +K  + +I + I  +M  L+
Sbjct: 791 HSAF----SRKASTLPPSVVANQR--VWK-KIWNAKMPSSAKVTAWKICHNILPTMDRLD 850

Query: 124 GKNRPYQSPV 132
            ++   +S V
Sbjct: 851 SRHVELESQV 853

BLAST of Spg029764 vs. NCBI nr
Match: XP_015388020.1 (uncharacterized protein LOC107177951 [Citrus sinensis])

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-06
Identity = 38/104 (36.54%), Postives = 54/104 (51.92%), Query Frame = 0

Query: 6   VNSLIDDNNNWTEEKVRAHFNREDANYILNTPLGDPSPKDEIIWSLDKKGIFKVKSAYHL 65
           V+ LID+++ W ++ +R HF++EDA  IL  PL      D+++W  DKKG + VKS Y L
Sbjct: 736 VSVLIDEDHCWRDDAIRKHFHQEDAAQILKIPLPRQPSLDQVLWHYDKKGNYSVKSGYQL 795

Query: 66  ALFCSSVSETSVSDPSKLKSEKQGVYKNKILNDPNKSKPESIQI 110
           AL     +      PS  K  K        L  P K+K E  Q+
Sbjct: 796 ALQMKFPNR-----PSSSKEGKSSWSSIWYLQIPEKNKKEDSQL 834

BLAST of Spg029764 vs. NCBI nr
Match: XP_024162452.1 (uncharacterized protein LOC112169623 [Rosa chinensis])

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-06
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 0

Query: 6   VNSLIDDNNNWTEEKVRAHFNREDANYILNTPLGDPSPKDEIIWSLDKKGIFKVKSAYHL 65
           V+ LI   +NW E KVR+ F  ED   IL  PL    P+D + W  ++KG+F VKSAYH 
Sbjct: 731 VDELITPPSNWNESKVRSIFTPEDVEAILAIPLSSRQPEDRLTWHFERKGMFTVKSAYHF 790

Query: 66  A 67
           A
Sbjct: 791 A 791

BLAST of Spg029764 vs. NCBI nr
Match: BAH93942.1 (Os07g0501200 [Oryza sativa Japonica Group])

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-06
Identity = 51/178 (28.65%), Postives = 78/178 (43.82%), Query Frame = 0

Query: 4   KNVNSLIDDNNNWTEEKVRAHFNREDANYILNTPLGDPSPKDEIIWSLDKKGIFKVKSAY 63
           K V  L++DN  W  E+++ HFN+ D + IL          D + W  DK GIF V+SAY
Sbjct: 199 KWVPDLLNDNGEWDLERIQQHFNQIDTDIILKIRPSRSQEADFVAWHPDKHGIFSVRSAY 258

Query: 64  HLALFCSSVSETSVSDPSKLKSEKQGVYKNKILNDPNKSKPESIQIF--NQISRSMHDLE 123
           HLA+  ++V+ +S S    L    + V+        N + P+ ++IF     + S+  L+
Sbjct: 259 HLAVSLANVNSSSSSSGHDLSKAWKLVW--------NCNIPQKVKIFAWKAATNSLATLQ 318

Query: 124 GKNRPYQSPVDL----GRCESFRKSGFLESP-PQNCW---------KLNSNASWNESG 166
            K      P+ +    GR E          P   N W            + ASW+ SG
Sbjct: 319 NKKTRRLEPMAICSICGREEEDVAHALCRCPHATNLWLSLRSSKDISFEAGASWSGSG 368

BLAST of Spg029764 vs. NCBI nr
Match: XP_030502714.1 (uncharacterized protein LOC115717884 [Cannabis sativa])

HSP 1 Score: 62.4 bits (150), Expect = 5.9e-06
Identity = 31/74 (41.89%), Postives = 41/74 (55.41%), Query Frame = 0

Query: 3   SKNVNSLIDDNNNWTEEKVRAHFNREDANYILNTPLGDPSPKDEIIWSLDKKGIFKVKSA 62
           S  ++  I D+  W   K+R HF   D   IL  P+   S KD+IIWS +  G+F VKSA
Sbjct: 710 STKLSFFISDSGYWDSTKLRNHFYESDIQDILEVPITGFSGKDDIIWSRESSGLFTVKSA 769

Query: 63  YHLALFCSSVSETS 77
           YHLAL    +  +S
Sbjct: 770 YHLALSTQDIPSSS 783

BLAST of Spg029764 vs. ExPASy TrEMBL
Match: A0A1S8AC01 (Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.5e-07
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 0

Query: 6   VNSLIDDNNNWTEEKVRAHFNREDANYILNTPLGDPSPKDEIIWSLDKKGIFKVKSAYHL 65
           V+ LIDD+N W E K+  HF++ DA+ I++ PL      D+I+W  DKKG + VKS Y +
Sbjct: 156 VSMLIDDDNQWDEMKIYCHFDKLDADRIVSMPLPRQPKDDQILWHYDKKGRYSVKSGYQV 215

Query: 66  AL 68
           AL
Sbjct: 216 AL 217

BLAST of Spg029764 vs. ExPASy TrEMBL
Match: A0A803QSV1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-06
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 3   SKNVNSLIDDNNNWTEEKVRAHFNREDANYILNTPLGDPSPKDEIIWSLDKKGIFKVKSA 62
           S  ++  I D+  W   K+R HF+  +   IL+ P+   S KD++IWS D  G+F VKSA
Sbjct: 41  SPKLSFFISDSGFWDSRKLRNHFSESNIQDILDVPITGFSGKDDLIWSRDSSGLFTVKSA 100

Query: 63  YHLALFCSSVSETS 77
           YHLAL    +  TS
Sbjct: 101 YHLALSHQDIPSTS 114

BLAST of Spg029764 vs. ExPASy TrEMBL
Match: C7J4L5 (Os07g0501200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0501200 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-06
Identity = 51/178 (28.65%), Postives = 78/178 (43.82%), Query Frame = 0

Query: 4   KNVNSLIDDNNNWTEEKVRAHFNREDANYILNTPLGDPSPKDEIIWSLDKKGIFKVKSAY 63
           K V  L++DN  W  E+++ HFN+ D + IL          D + W  DK GIF V+SAY
Sbjct: 199 KWVPDLLNDNGEWDLERIQQHFNQIDTDIILKIRPSRSQEADFVAWHPDKHGIFSVRSAY 258

Query: 64  HLALFCSSVSETSVSDPSKLKSEKQGVYKNKILNDPNKSKPESIQIF--NQISRSMHDLE 123
           HLA+  ++V+ +S S    L    + V+        N + P+ ++IF     + S+  L+
Sbjct: 259 HLAVSLANVNSSSSSSGHDLSKAWKLVW--------NCNIPQKVKIFAWKAATNSLATLQ 318

Query: 124 GKNRPYQSPVDL----GRCESFRKSGFLESP-PQNCW---------KLNSNASWNESG 166
            K      P+ +    GR E          P   N W            + ASW+ SG
Sbjct: 319 NKKTRRLEPMAICSICGREEEDVAHALCRCPHATNLWLSLRSSKDISFEAGASWSGSG 368

BLAST of Spg029764 vs. ExPASy TrEMBL
Match: A0A803QI38 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-06
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 6    VNSLIDDNNNWTEEKVRAHFNREDANYILNTPLGDPSPKDEIIWSLDKKGIFKVKSAYHL 65
            V+  ID++  W  EK++ +F+    + IL  P+G P   D +IW+ D  GIF VKSAYH+
Sbjct: 1375 VSFFIDNSGFWDREKLQQYFDEYSVSTILKIPIGGPQKTDSLIWTQDNSGIFSVKSAYHI 1434

Query: 66   ALFCSSVSETSVSDPSK 83
            A   S    +S S  SK
Sbjct: 1435 ANNTSMPPSSSDSSLSK 1451

BLAST of Spg029764 vs. ExPASy TrEMBL
Match: A0A5D3CRR9 (Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00630 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-06
Identity = 37/107 (34.58%), Postives = 54/107 (50.47%), Query Frame = 0

Query: 1   MTSKNVNSLIDDNNNWTEEKVRAHFNREDANYILNTPLGDPSPKDEIIWSLDKKGIFKVK 60
           +  + V+SLI+    W E+ ++A F + DAN ILN P       D+I W  D KG F +K
Sbjct: 115 LKGRRVSSLINFERKWNEDLIKAKFIKSDANSILNMPFRSQDSNDDIYWGHDFKGQFSIK 174

Query: 61  SAYHLALFCSSVSETSVSDPSKLKSEKQGVYKNKILNDPNKSKPESI 108
           SAYH A+              + K E +G +K+   +D  K K ES+
Sbjct: 175 SAYHFAI--------------ESKDENRG-WKDVAKSDRRKGKVESV 206

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_040363828.11.2e-0636.15uncharacterized protein LOC112169513 [Rosa chinensis][more]
XP_015388020.12.0e-0636.54uncharacterized protein LOC107177951 [Citrus sinensis][more]
XP_024162452.12.6e-0647.54uncharacterized protein LOC112169623 [Rosa chinensis][more]
BAH93942.13.5e-0628.65Os07g0501200 [Oryza sativa Japonica Group][more]
XP_030502714.15.9e-0641.89uncharacterized protein LOC115717884 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S8AC017.5e-0746.77Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1[more]
A0A803QSV11.3e-0641.89Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
C7J4L51.7e-0628.65Os07g0501200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0501200 PE... [more]
A0A803QI382.9e-0640.26Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A5D3CRR93.7e-0634.58Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg029764.1Spg029764.1mRNA