Spg029433 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg029433
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPhosphatidic acid phosphatase (PAP2) family protein
Locationscaffold12: 32577253 .. 32578597 (+)
RNA-Seq ExpressionSpg029433
SyntenySpg029433
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAATCTAACGCTAACACCCAAGTCAGTACAAAAATTGGCAACCATGACATAGCCAAAACTATAACAAAACGATCTAGAGGTTTAAATCACAAGACCACCAAAACATCCTTAATCATACATTGCCATAAAAAGATGTTAGTCATTCTAGTTACAAAAGATGCATCTCTAAGTAATGCAAAATGACATGCAACCTATCGAGTCTGGTGGTAGATATCAACTCTGGTAGGCTCATCGGAAACTCAAACGCTACTTGGTGGAAAAAATTAGGAAGAAAAAAGGTGAGCTAATAAACTCAATGAATGGTAAGAGTTCATAAGAAGGTAATTTGCTAAAAGTTATAAACAAACTAAACACTTTGAAAGAAAAATTTTAAAAGCACTTTAGTAAAAACCCGAATGGTTTTGCTTTTAATTTTGACCCAAGAAAGATTTTTACCAATGGAGATGTTGTACTCACCTTATATGATATACCAAGATGTTTCCTACTTCTAATGGATGTAGTAGTTTATTGGCATTGCAGCTTATAGTATCTTAACTTTAAAGGTACCAGTTGTTCTCAGACACTGCTATTTTACCTTTGCTCGTGGTATTAGAGTGTGTAGGAGTAACAGTAACACAGTTTTCCAACAAAACTTTGAGCAAATGTCTAAACACAGATTTCCACTTTCTTGCAGTGATTTAAACTTCATCAACTTGAAAGTGGATTATGTAGGATCAAATTTGTCAGTTTAGGACTAGCTATATTGTTTAATAACGTTTTGATTCTTTCCATAGAGCAAGTGGCTTGTAGCTGCCCTCTTCACTGCTACAATTCTTTTGAGGCATGATGCAGAAGCCATGGGATCGGATATTAATGTTGTACTTTCTATAGTACTGAAAAAGATACTAAACCAAGAGCGCCTATTGCTACATTGAGATCTAATCCTGGAATGCCCTCTTCTCATGCAGAATCCATATTCTTCACTGTCGTATCCGTTGCCCTGTCAGGTAATTTTTTACTGTCATTAGGCAACAAGTGATTTTCGAATGGTAGCTCTATTAAGTTGATAGAATGCTTGTCTTGACTCCTATTTGTTGCCCTGTCAGGTAATTTCCTACTGCATAGGCTTCGTTATCTATGTCTTAAATAATTGGTTCAGGGATGAAAAGTAATTGTAGTGACATGTACAGTATTCTGCTACATGCTTCTATTGGATCCTCAGAGTCCCTTCTTTAGGCAAACAGGTGTTCGGAAAATTGAATTTGATCCGCTGATTTCTCCCTTTGATGGAGTGAGAACTGTGTCCAGAAGGCAGTTAGGATGTAGATTTTTCTTGTCTTTAGAATTGAAGACTGATTGA

mRNA sequence

ATGATCAAATCTAACGCTAACACCCAAAGCAAGTGGCTTGTAGCTGCCCTCTTCACTGCTACAATTCTTTTGAGGCATGATGCAGAAGCCATGGGATCGGATATTAATGTTGTACTTTCTATAAATCCATATTCTTCACTGTCGTATCCGTTGCCCTGTCAGAGTCCCTTCTTTAGGCAAACAGGTGTTCGGAAAATTGAATTTGATCCGCTGATTTCTCCCTTTGATGGAGTGAGAACTGTGTCCAGAAGGCAGTTAGGATGTAGATTTTTCTTGTCTTTAGAATTGAAGACTGATTGA

Coding sequence (CDS)

ATGATCAAATCTAACGCTAACACCCAAAGCAAGTGGCTTGTAGCTGCCCTCTTCACTGCTACAATTCTTTTGAGGCATGATGCAGAAGCCATGGGATCGGATATTAATGTTGTACTTTCTATAAATCCATATTCTTCACTGTCGTATCCGTTGCCCTGTCAGAGTCCCTTCTTTAGGCAAACAGGTGTTCGGAAAATTGAATTTGATCCGCTGATTTCTCCCTTTGATGGAGTGAGAACTGTGTCCAGAAGGCAGTTAGGATGTAGATTTTTCTTGTCTTTAGAATTGAAGACTGATTGA

Protein sequence

MIKSNANTQSKWLVAALFTATILLRHDAEAMGSDINVVLSINPYSSLSYPLPCQSPFFRQTGVRKIEFDPLISPFDGVRTVSRRQLGCRFFLSLELKTD
Homology
[Close]
BLAST of Spg029433 vs. NCBI nr
Match: KCW60604.1 (hypothetical protein EUGRSUZ_H03331 [Eucalyptus grandis])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 0 

Query: 2   IKSNANTQSKWLVAALFTATILLRHDAEA----MGSDINVVLSINPYSSLSYPLPCQSPF 61
           ++SN N  SKWLVA +F A ILLRHDAE+    MGSD+N +LS+     L+   P  +P 
Sbjct: 41  LESNLNHLSKWLVAGVFGAIILLRHDAESRWAPMGSDVNSILSVVLKQILNQERPVSTPL 100

Query: 62  FRQTGVR 65
           F     R
Sbjct: 101 FHSFSER 107

[Close]
BLAST of Spg029433 vs. ExPASy TrEMBL
Match: A0A059B3K5 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H03331 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.8e-05
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 0 

Query: 2   IKSNANTQSKWLVAALFTATILLRHDAEA----MGSDINVVLSINPYSSLSYPLPCQSPF 61
           ++SN N  SKWLVA +F A ILLRHDAE+    MGSD+N +LS+     L+   P  +P 
Sbjct: 41  LESNLNHLSKWLVAGVFGAIILLRHDAESRWAPMGSDVNSILSVVLKQILNQERPVSTPL 100

Query: 62  FRQTGVR 65
           F     R
Sbjct: 101 FHSFSER 107

[Close]
BLAST of Spg029433 vs. TAIR 10
Match: AT5G66450.1 (Phosphatidic acid phosphatase (PAP2) family protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.3e-04
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 0 

Query: 2   IKSNANTQSKWLVAALFTATILLRHDAEAM----GSDINVVLSI 42
           I++ AN  SKW+VAALF + +LLRHD  A+    GS  N VLS+
Sbjct: 104 IEAIANRLSKWIVAALFGSVLLLRHDGAALWAVIGSVSNSVLSV 147

[Close]
BLAST of Spg029433 vs. TAIR 10
Match: AT5G66450.2 (Phosphatidic acid phosphatase (PAP2) family protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.3e-04
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 0 

Query: 2  IKSNANTQSKWLVAALFTATILLRHDAEAM----GSDINVVLSI 42
          I++ AN  SKW+VAALF + +LLRHD  A+    GS  N VLS+
Sbjct: 45 IEAIANRLSKWIVAALFGSVLLLRHDGAALWAVIGSVSNSVLSV 88

The following BLAST results are available for this feature:
BLAST of Spg029433 vs. NCBI nr
Match NameE-valueIdentityDescription
KCW60604.11.4e-0446.27hypothetical protein EUGRSUZ_H03331 [Eucalyptus grandis][more]
BLAST of Spg029433 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg029433 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A059B3K56.8e-0546.27Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H03331 PE=4 SV... [more]
BLAST of Spg029433 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G66450.14.3e-0452.27Phosphatidic acid phosphatase (PAP2) family protein [more]
AT5G66450.24.3e-0452.27Phosphatidic acid phosphatase (PAP2) family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg029433.1Spg029433.1mRNA