Spg029328 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg029328
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold12: 35932941 .. 35933201 (+)
RNA-Seq ExpressionSpg029328
SyntenySpg029328
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGGAATAATGGGCTGCGTCGATGCTGCTCGGTGCGCCATGATCGGGTCCGAGCAGCAGCGAGTGATCAACAAGCAGTTTGATCAGTTTCAGATGCCTCTTCACTACCCAAGGTACAAGAGGAGTGACTATGAGGGCATGCCGGAGTGGAAACTGGACTGTCTTCTCAAAGAATACGGCCTCCCGGTCGCCGGAGACGTCGCCCAGAAGCGGAAGTTTGCCATGGGAGCTTTCCTTTGGCCTTGTGAAATGTATTGA

mRNA sequence

ATGAGCGGAATAATGGGCTGCGTCGATGCTGCTCGGTGCGCCATGATCGGGTCCGAGCAGCAGCGAGTGATCAACAAGCAGTTTGATCAGTTTCAGATGCCTCTTCACTACCCAAGGTACAAGAGGAGTGACTATGAGGGCATGCCGGAGTGGAAACTGGACTGTCTTCTCAAAGAATACGGCCTCCCGGTCGCCGGAGACGTCGCCCAGAAGCGGAAGTTTGCCATGGGAGCTTTCCTTTGGCCTTGTGAAATGTATTGA

Coding sequence (CDS)

ATGAGCGGAATAATGGGCTGCGTCGATGCTGCTCGGTGCGCCATGATCGGGTCCGAGCAGCAGCGAGTGATCAACAAGCAGTTTGATCAGTTTCAGATGCCTCTTCACTACCCAAGGTACAAGAGGAGTGACTATGAGGGCATGCCGGAGTGGAAACTGGACTGTCTTCTCAAAGAATACGGCCTCCCGGTCGCCGGAGACGTCGCCCAGAAGCGGAAGTTTGCCATGGGAGCTTTCCTTTGGCCTTGTGAAATGTATTGA

Protein sequence

MSGIMGCVDAARCAMIGSEQQRVINKQFDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPCEMY
Homology
BLAST of Spg029328 vs. NCBI nr
Match: XP_022958391.1 (uncharacterized protein LOC111459627 [Cucurbita moschata])

HSP 1 Score: 157.5 bits (397), Expect = 5.1e-35
Identity = 76/92 (82.61%), Postives = 80/92 (86.96%), Query Frame = 0

Query: 1  MSGIMGCVDAARCAMIGSE------QQRVINKQFDQFQMPLHYPRYKRSDYEGMPEWKLD 60
          MS IM  VDAARCA+IG+E      QQRVI+KQFD FQMPLHYP+YKRSDYEGM EWKLD
Sbjct: 1  MSRIMSWVDAARCAVIGAEQPQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLD 60

Query: 61 CLLKEYGLPVAGDVAQKRKFAMGAFLWPCEMY 87
          CLLKEYGLPVAGDVAQKRKFAMGAFLWP EMY
Sbjct: 61 CLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 92

BLAST of Spg029328 vs. NCBI nr
Match: KAE8647840.1 (hypothetical protein Csa_000107 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 8.6e-35
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 0

Query: 5  MGCVDAARCAMIGSEQQRVINKQFDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPV 64
          M C DAARC+MIGSE Q+  +K FDQFQMPLHYPRY+RSDYEGMPEWKLDCLLKEYGLPV
Sbjct: 1  MSCADAARCSMIGSEHQQRSSKAFDQFQMPLHYPRYRRSDYEGMPEWKLDCLLKEYGLPV 60

Query: 65 AGDVAQKRKFAMGAFLWPCEM 86
           GDVAQKRKFAMGAFLWPCE+
Sbjct: 61 VGDVAQKRKFAMGAFLWPCEI 81

BLAST of Spg029328 vs. NCBI nr
Match: KAA0042696.1 (hypothetical protein E6C27_scaffold44G001940 [Cucumis melo var. makuwa] >TYK06100.1 hypothetical protein E5676_scaffold376G002010 [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 8.6e-35
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 5  MGCVDAARCAMIGSEQQRVINKQFDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPV 64
          M C DAARC+MIGSE Q+  +K  DQFQMPLHYPRYKRSDYE MPEWKLDCLLKEYGLP+
Sbjct: 1  MSCADAARCSMIGSEHQQRSSKALDQFQMPLHYPRYKRSDYEDMPEWKLDCLLKEYGLPI 60

Query: 65 AGDVAQKRKFAMGAFLWPCEMY 87
           GDVAQKRKFAMGAFLWPCEMY
Sbjct: 61 VGDVAQKRKFAMGAFLWPCEMY 82

BLAST of Spg029328 vs. NCBI nr
Match: KAG6606051.1 (hypothetical protein SDJN03_03368, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.5 bits (389), Expect = 4.3e-34
Identity = 75/91 (82.42%), Postives = 79/91 (86.81%), Query Frame = 0

Query: 1  MSGIMGCVDAARCAMIGSE-----QQRVINKQFDQFQMPLHYPRYKRSDYEGMPEWKLDC 60
          MS IM  V AARCA+IG+E     QQRVI+KQFD FQMPLHYP+YKRSDYEGM EWKLDC
Sbjct: 1  MSRIMSWVYAARCAVIGAEQPQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLDC 60

Query: 61 LLKEYGLPVAGDVAQKRKFAMGAFLWPCEMY 87
          LLKEYGLPVAGDVAQKRKFAMGAFLWP EMY
Sbjct: 61 LLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 91

BLAST of Spg029328 vs. NCBI nr
Match: KAG7035999.1 (hypothetical protein SDJN02_02799, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.7 bits (387), Expect = 7.3e-34
Identity = 75/93 (80.65%), Postives = 79/93 (84.95%), Query Frame = 0

Query: 1  MSGIMGCVDAARCAMIGSE-------QQRVINKQFDQFQMPLHYPRYKRSDYEGMPEWKL 60
          MS IM  V AARCA+IG+E       QQRVI+KQFD FQMPLHYP+YKRSDYEGM EWKL
Sbjct: 1  MSRIMSWVYAARCAVIGAEQPQQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL 60

Query: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPCEMY 87
          DCLLKEYGLPVAGDVAQKRKFAMGAFLWP EMY
Sbjct: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 93

BLAST of Spg029328 vs. ExPASy TrEMBL
Match: A0A0A0KMG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151500 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.8e-38
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0

Query: 1  MSGIMGCVDAARCAMIGSEQQRVINKQFDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEY 60
          MSGIM C DAARC+MIGSE Q+  +K FDQFQMPLHYPRY+RSDYEGMPEWKLDCLLKEY
Sbjct: 1  MSGIMSCADAARCSMIGSEHQQRSSKAFDQFQMPLHYPRYRRSDYEGMPEWKLDCLLKEY 60

Query: 61 GLPVAGDVAQKRKFAMGAFLWPCEMY 87
          GLPV GDVAQKRKFAMGAFLWPCEMY
Sbjct: 61 GLPVVGDVAQKRKFAMGAFLWPCEMY 86

BLAST of Spg029328 vs. ExPASy TrEMBL
Match: A0A6J1H1Y5 (uncharacterized protein LOC111459627 OS=Cucurbita moschata OX=3662 GN=LOC111459627 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.4e-35
Identity = 76/92 (82.61%), Postives = 80/92 (86.96%), Query Frame = 0

Query: 1  MSGIMGCVDAARCAMIGSE------QQRVINKQFDQFQMPLHYPRYKRSDYEGMPEWKLD 60
          MS IM  VDAARCA+IG+E      QQRVI+KQFD FQMPLHYP+YKRSDYEGM EWKLD
Sbjct: 1  MSRIMSWVDAARCAVIGAEQPQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLD 60

Query: 61 CLLKEYGLPVAGDVAQKRKFAMGAFLWPCEMY 87
          CLLKEYGLPVAGDVAQKRKFAMGAFLWP EMY
Sbjct: 61 CLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 92

BLAST of Spg029328 vs. ExPASy TrEMBL
Match: A0A5D3C447 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002010 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.2e-35
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 5  MGCVDAARCAMIGSEQQRVINKQFDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPV 64
          M C DAARC+MIGSE Q+  +K  DQFQMPLHYPRYKRSDYE MPEWKLDCLLKEYGLP+
Sbjct: 1  MSCADAARCSMIGSEHQQRSSKALDQFQMPLHYPRYKRSDYEDMPEWKLDCLLKEYGLPI 60

Query: 65 AGDVAQKRKFAMGAFLWPCEMY 87
           GDVAQKRKFAMGAFLWPCEMY
Sbjct: 61 VGDVAQKRKFAMGAFLWPCEMY 82

BLAST of Spg029328 vs. ExPASy TrEMBL
Match: A0A6J1CXF4 (uncharacterized protein LOC111015321 OS=Momordica charantia OX=3673 GN=LOC111015321 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.8e-28
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 3  GIMGCVDAARCAMIGSEQQRVINKQFDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGL 62
          G+MG V+         +QQ+ ++KQF QFQMPLHYPRYK+SDYE MPEWKLDCLLKEYGL
Sbjct: 10 GMMGGVE---------QQQQRVSKQFHQFQMPLHYPRYKKSDYEAMPEWKLDCLLKEYGL 69

Query: 63 PVAGDVAQKRKFAMGAFLWPCEMY 87
          P+ GDVAQKRKFAMGAFLWPC+ Y
Sbjct: 70 PIVGDVAQKRKFAMGAFLWPCDQY 84

BLAST of Spg029328 vs. ExPASy TrEMBL
Match: A0A2P6P6E1 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0195541 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 0

Query: 16 IGSEQQRVINKQFDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVAGDVAQKRKFA 75
          +GS  Q   N +   FQMP+HYPRYK+SDYE MPEWKLDCLLK+YGLPV GDV QKRKFA
Sbjct: 16 LGSNNQTSNNSKICSFQMPVHYPRYKKSDYEAMPEWKLDCLLKQYGLPVIGDVNQKRKFA 75

Query: 76 MGAFLWPCE 85
          MGAFLWP +
Sbjct: 76 MGAFLWPSQ 84

BLAST of Spg029328 vs. TAIR 10
Match: AT5G41761.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-19
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 27 QFDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPCE 85
          Q   FQ+PLHYP+Y +SDYE MPEW+LD LL+EYGLPV GD  +KRKFA+GAFLW  E
Sbjct: 41 QSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSSE 98

BLAST of Spg029328 vs. TAIR 10
Match: AT3G55570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-16
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 25 NKQFDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLW 82
          N +   F+MPLHYPRY + DY+ MPEWKLD +L +YGL   GD+A KR FA+GAFLW
Sbjct: 26 NGEGSVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLW 82

BLAST of Spg029328 vs. TAIR 10
Match: AT5G55620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 5.8e-13
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 31  FQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPCEM 86
           FQ+PLHYP+Y +SDYE M + +LD LLK+YG    G +  KR FA+ +FLWP ++
Sbjct: 47  FQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQL 101

BLAST of Spg029328 vs. TAIR 10
Match: AT3G09950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 9.9e-13
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 31 FQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVAGD--VAQKRKFAMGAFLWP 83
          F+MPLHYPRY + DYE M EW+LD LL EYGL    D  + +KR FA+  F+WP
Sbjct: 36 FKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFAIDTFIWP 89

BLAST of Spg029328 vs. TAIR 10
Match: AT3G11405.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-10
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 31  FQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPV-AGDVAQKRKFAMGAFLW 82
           FQMPL YP Y +  Y+ M E +LD LLK YGLP   G+++ K++FA+GAFLW
Sbjct: 57  FQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022958391.15.1e-3582.61uncharacterized protein LOC111459627 [Cucurbita moschata][more]
KAE8647840.18.6e-3585.19hypothetical protein Csa_000107 [Cucumis sativus][more]
KAA0042696.18.6e-3584.15hypothetical protein E6C27_scaffold44G001940 [Cucumis melo var. makuwa] >TYK0610... [more]
KAG6606051.14.3e-3482.42hypothetical protein SDJN03_03368, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7035999.17.3e-3480.65hypothetical protein SDJN02_02799, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KMG01.8e-3887.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151500 PE=4 SV=1[more]
A0A6J1H1Y52.4e-3582.61uncharacterized protein LOC111459627 OS=Cucurbita moschata OX=3662 GN=LOC1114596... [more]
A0A5D3C4474.2e-3584.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1CXF43.8e-2871.43uncharacterized protein LOC111015321 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A2P6P6E11.1e-2272.46Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0195541 PE=4... [more]
Match NameE-valueIdentityDescription
AT5G41761.11.4e-1968.97unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G55570.11.1e-1661.40unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G55620.15.8e-1352.73unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G09950.19.9e-1357.41unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G11405.13.5e-1055.77unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33513:SF31SUBFAMILY NOT NAMEDcoord: 1..84
NoneNo IPR availablePANTHERPTHR33513OS06G0523300 PROTEINcoord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg029328.1Spg029328.1mRNA