Spg028976 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg028976
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDUF1985 domain-containing protein
Locationscaffold5: 15544484 .. 15545342 (-)
RNA-Seq ExpressionSpg028976
SyntenySpg028976
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTTCGGTTTAGCGATTTAGGGCAAGGAAGTTCACAGAAGTTGCTTCGTGTTTCTAGGCTGTAATGACATGAAGGAATGCCATTCCCTGAGTGGGTTCGTCAGGTAGTTGGAGTGTAAACGGGAGCGAGAGATAGAAGACAAACGAGCGAGAGCGAAAATGAGAGCCTGATCGTGAATTTAAGAGGGTGTAATTGAAATTAGGGAAAATCTATGTGTTGCCTTTTTTTTTTCCTGATGTGCGTGTGATGTTTAAAATGCATTTAGGTTCGAAATGGCACATGCTATGAAGATTGCCGAGGCCGATCAATTTTCTACCCAAGTGACCTGCCTGTACCACATTGGGAATGCCAACGAGATCGTTAGCCACAAGCTCAACGCCAGGCGGAGGAACATGTTCAGGAGGACCGTATTTGGGCGGTTTCTGGACATGAATATTGTGTTCAACAGTCACCTGGTGCATCACGTGCTGCTTAGGGAGGTTCAAACAGACCGAATTGATGCAATGAGTTTCAATATCAGGGAGAGGGTCGTGACCTTCTCGAAGGAGGAGTTCCTCTTGATGACGGGACTCTAGAGGAGCCTCGCTCCTCGAGTTCAACGGGGCTATATACCGAGAATGGGGTTGGAGAGAAAGTACTTTGGGGATACCAACCCGTCGGCCCCACTCAAATTGGAAAAGCTGGAGGAGAAGTACAAGGAACTCCAGTTTGAGACGGACGAGGATGCAGTCAGGGTCACCTTGGTTTACTACACGGAGGTGGCAATGATGGGGAAGAACAAGACCAAAAGTGTCGTCGACAAAACACTGTTCGACGATGTTGAAGACTTGGATTATTACAACAGCAGGGACTGA

mRNA sequence

ATGGGTCTTCGGTTTAGCGATTTAGGGCAAGGAAGTTCACAGAAGTTGCTTCGTGTTTCTAGGCTGTTCGAAATGGCACATGCTATGAAGATTGCCGAGGCCGATCAATTTTCTACCCAAGTGACCTGCCTGTACCACATTGGGAATGCCAACGAGATCGTTAGCCACAAGCTCAACGCCAGGCGGAGGAACATGTTCAGGAGGACCGTATTTGGGCGGTTTCTGGACATGAATATTGTGTTCAACAGTCACCTGGTGCATCACGTGCTGCTTAGGGAGAGGAGCCTCGCTCCTCGAGTTCAACGGGGCTATATACCGAGAATGGGGTTGGAGAGAAAGTACTTTGGGGATACCAACCCGTCGGCCCCACTCAAATTGGAAAAGCTGGAGGAGAAGTACAAGGAACTCCAGTTTGAGACGGACGAGGATGCAGTCAGGGTCACCTTGGTTTACTACACGGAGGTGGCAATGATGGGGAAGAACAAGACCAAAAGTGTCGTCGACAAAACACTGTTCGACGATGTTGAAGACTTGGATTATTACAACAGCAGGGACTGA

Coding sequence (CDS)

ATGGGTCTTCGGTTTAGCGATTTAGGGCAAGGAAGTTCACAGAAGTTGCTTCGTGTTTCTAGGCTGTTCGAAATGGCACATGCTATGAAGATTGCCGAGGCCGATCAATTTTCTACCCAAGTGACCTGCCTGTACCACATTGGGAATGCCAACGAGATCGTTAGCCACAAGCTCAACGCCAGGCGGAGGAACATGTTCAGGAGGACCGTATTTGGGCGGTTTCTGGACATGAATATTGTGTTCAACAGTCACCTGGTGCATCACGTGCTGCTTAGGGAGAGGAGCCTCGCTCCTCGAGTTCAACGGGGCTATATACCGAGAATGGGGTTGGAGAGAAAGTACTTTGGGGATACCAACCCGTCGGCCCCACTCAAATTGGAAAAGCTGGAGGAGAAGTACAAGGAACTCCAGTTTGAGACGGACGAGGATGCAGTCAGGGTCACCTTGGTTTACTACACGGAGGTGGCAATGATGGGGAAGAACAAGACCAAAAGTGTCGTCGACAAAACACTGTTCGACGATGTTGAAGACTTGGATTATTACAACAGCAGGGACTGA

Protein sequence

MGLRFSDLGQGSSQKLLRVSRLFEMAHAMKIAEADQFSTQVTCLYHIGNANEIVSHKLNARRRNMFRRTVFGRFLDMNIVFNSHLVHHVLLRERSLAPRVQRGYIPRMGLERKYFGDTNPSAPLKLEKLEEKYKELQFETDEDAVRVTLVYYTEVAMMGKNKTKSVVDKTLFDDVEDLDYYNSRD
Homology
BLAST of Spg028976 vs. NCBI nr
Match: XP_038888550.1 (uncharacterized protein LOC120078361 isoform X1 [Benincasa hispida])

HSP 1 Score: 169.1 bits (427), Expect = 3.6e-38
Identity = 98/193 (50.78%), Postives = 117/193 (60.62%), Query Frame = 0

Query: 25  MAHAMKIAEADQFSTQVTCLYHIGNANEIVSHKLNARRRNMFRRTVFGRFLDMNIVFNSH 84
           M  ++KI E D+F  QVTCL H+ NAN+IV  KL  R+  MF+RTVFGRFLD+ +VFN+ 
Sbjct: 1   MLKSLKIREVDRFPGQVTCLAHVANANKIVKQKLTERQLEMFKRTVFGRFLDIELVFNNP 60

Query: 85  LVHHVLLRE--------------------------------RSLAPRVQRGYIPRMGLER 144
           L+HH+LL E                                RSL  RV R       L  
Sbjct: 61  LIHHMLLWEVKNSGMDSISFFVRGKVVTFSKDDFLLITGLWRSLT-RVGRSEESSHELFT 120

Query: 145 KYFGDTNPSAPLKLEKLEEKYKELQFETDEDAVRVTLVYYTEVAMMGKNKTKSVVDKTLF 186
           KYFG    S    L  LEE+YKEL FE D+DAV++TLVYYTEVAMM KNK K+VVD+TLF
Sbjct: 121 KYFGSRLASDTFHLHLLEEEYKELVFENDDDAVKITLVYYTEVAMMSKNKQKNVVDRTLF 180

BLAST of Spg028976 vs. NCBI nr
Match: XP_038880341.1 (uncharacterized protein LOC120071983 [Benincasa hispida])

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-37
Identity = 93/192 (48.44%), Postives = 119/192 (61.98%), Query Frame = 0

Query: 25  MAHAMKIAEADQFSTQVTCLYHIGNANEIVSHKLNARRRNMFRRTVFGRFLDMNIVFNSH 84
           M+ ++KI E D+F  QVTCL H+ NAN+IV  KL  R+  MF+RTVFGRFLD+ +VFN+ 
Sbjct: 1   MSKSLKIREVDRFPGQVTCLAHVANANKIVKQKLTERQLEMFKRTVFGRFLDIELVFNNP 60

Query: 85  LVHHVLLRE------RSLA-------------------------PRVQRGYIPRMGLERK 144
           L+HH+LLRE       S++                          RV+        L  +
Sbjct: 61  LIHHMLLREVKNSGMNSISFFVRGKVVIFSKDEFLLITCLWRSPTRVRWSEESSHELFTR 120

Query: 145 YFGDTNPSAPLKLEKLEEKYKELQFETDEDAVRVTLVYYTEVAMMGKNKTKSVVDKTLFD 186
           YFG    S    L  LEE+YKEL FE D+DAV++TLVYYTEVAMMGKNK K+ +D+TLFD
Sbjct: 121 YFGSQLTSDAFHLHLLEEEYKELVFENDDDAVKITLVYYTEVAMMGKNKQKNAIDRTLFD 180

BLAST of Spg028976 vs. NCBI nr
Match: XP_038896702.1 (uncharacterized protein LOC120084963 [Benincasa hispida])

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-36
Identity = 92/188 (48.94%), Postives = 114/188 (60.64%), Query Frame = 0

Query: 25  MAHAMKIAEADQFSTQVTCLYHIGNANEIVSHKLNARRRNMFRRTVFGRFLDMNIVFNSH 84
           M+ ++KI E D+F  QVTC+ H+ NAN+IV  KL  R+  MF+RTVFGRFLD+ +VFNS 
Sbjct: 1   MSKSLKIREVDRFLGQVTCMAHVANANKIVKQKLTERQLEMFKRTVFGRFLDIELVFNSP 60

Query: 85  LVHHVLLRERSLA---------------------------PRVQRGYIPRMGLERKYFGD 144
           L+HH+LLRE   +                            RV R       L  K FG 
Sbjct: 61  LIHHMLLREVKNSGMDSISFFVRGKVVTFSKDDFFVDHWFVRVGRSEKSSHELFIKCFGS 120

Query: 145 TNPSAPLKLEKLEEKYKELQFETDEDAVRVTLVYYTEVAMMGKNKTKSVVDKTLFDDVED 186
              S    L  L+E+YKEL FE DEDAV++TL YYT+VAMMGKNK K+ +D TLFDDVED
Sbjct: 121 RLTSDAFHLHLLQEEYKELVFENDEDAVKITLAYYTKVAMMGKNKQKNAMDHTLFDDVED 180

BLAST of Spg028976 vs. NCBI nr
Match: XP_038885808.1 (uncharacterized protein LOC120076102 [Benincasa hispida])

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-34
Identity = 87/192 (45.31%), Postives = 118/192 (61.46%), Query Frame = 0

Query: 25  MAHAMKIAEADQFSTQVTCLYHIGNANEIVSHKLNARRRNMFRRTVFGRFLDMNIVFNSH 84
           M+ ++KI   D+FS QVT L H+ NAN+IV  KL  R+  MF+RTVFGRF+D+ +VFNS 
Sbjct: 1   MSKSLKIHVVDRFSRQVTYLAHVANANKIVKQKLTERQLEMFKRTVFGRFIDIELVFNSP 60

Query: 85  LVHHVLLRE--------------RSLAPRVQRGYIPRMGLER-----------------K 144
           L+HH+LL E                +    + G++   GL +                 +
Sbjct: 61  LIHHILLSEVKNSGMDSISFFVRGKVITFSKDGFLLITGLWQSPTRVGWSEESSHELFTR 120

Query: 145 YFGDTNPSAPLKLEKLEEKYKELQFETDEDAVRVTLVYYTEVAMMGKNKTKSVVDKTLFD 186
           YFG    S    L  L+E+YKEL FE D+DAV++TL+YY +VAMMGKNK K+VVD+T+FD
Sbjct: 121 YFGSRLTSDAFHLHLLKEEYKELVFENDDDAVKITLIYYIKVAMMGKNKQKNVVDRTIFD 180

BLAST of Spg028976 vs. NCBI nr
Match: XP_038896011.1 (uncharacterized protein LOC120084191 [Benincasa hispida])

HSP 1 Score: 152.5 bits (384), Expect = 3.5e-33
Identity = 82/161 (50.93%), Postives = 111/161 (68.94%), Query Frame = 0

Query: 25  MAHAMKIAEADQFSTQVTCLYHIGNANEIVSHKLNARRRNMFRRTVFGRFLDMNIVFNSH 84
           MA   +IAEAD+F  QVT L HI NAN+IV  KL   + +MF+RTVFGRF+D+++VFNS 
Sbjct: 1   MATRFRIAEADRFPGQVTNLVHIANANKIVKEKLTPTQLDMFKRTVFGRFVDVDMVFNSP 60

Query: 85  LVHHVLLRERSLAPRVQRGYIPRMGLERKYFGDTNPSAPLKLEKLEEKYKELQFETDEDA 144
           +VHH+LLR+     + +R       +  KYFG+      L L +LEEKYK+L+FE D+ A
Sbjct: 61  IVHHMLLRK----VKRRRSNSMSFSVYGKYFGNRVTKDTLHLRQLEEKYKDLEFENDDAA 120

Query: 145 VRVTLVYYTEVAMMGKNKTKSVVDKTLFDDVEDLDYYNSRD 186
           V+++LVYYTEV MM KNK K+ +    F DV++L+YYNS D
Sbjct: 121 VKISLVYYTEVTMMEKNKQKNAIYLKRFKDVQNLEYYNSLD 157

BLAST of Spg028976 vs. ExPASy TrEMBL
Match: A0A6J1DSS5 (uncharacterized protein LOC111023969 OS=Momordica charantia OX=3673 GN=LOC111023969 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 81/194 (41.75%), Postives = 117/194 (60.31%), Query Frame = 0

Query: 25  MAHAMKIAEADQFSTQVTCLYHIGNANEIVSHKLNARRRNMFR-RTVFGRFLDMNIVFNS 84
           M H +K++EAD+F  QVT L H+   N+I++ KL   + +MFR RT+FGRF+D++++F S
Sbjct: 1   MEHTLKVSEADRFPAQVTSLSHLSTTNKIINQKLTPTQLDMFRKRTIFGRFVDLDMMFCS 60

Query: 85  HLVHHVLLRE--------------------------------RSLAPRVQRGYIPRMGLE 144
            LVH+ LLRE                                RS + RV +  + +  L 
Sbjct: 61  ALVHYFLLREVVDTRPDVMRFDILGTIVTFSKAEFLLMTGLWRS-SGRVLQKKVSKNRLR 120

Query: 145 RKYFGDTNPSAPLKLEKLEEKYKELQFETDEDAVRVTLVYYTEVAMMGKNKTKSVVDKTL 186
           R+YF D      L+LE+ E++YK++ F  D+DAV+V+L+YYTE+ MMGKNK KS VDK L
Sbjct: 121 REYFKDV---VDLRLEEFEQEYKKIVFANDDDAVKVSLIYYTEIVMMGKNKGKSNVDKDL 180

BLAST of Spg028976 vs. ExPASy TrEMBL
Match: A0A0A0KM59 (DUF1985 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G141180 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 86/199 (43.22%), Postives = 115/199 (57.79%), Query Frame = 0

Query: 25  MAHAMKIAEADQFSTQVTCL-YHIGNANEIVSHKLNARRRNMFRRTVFGRFLDMNIVFNS 84
           M   +KI+  ++F  Q + +  HIG AN+IV  KL  ++ ++F+RTVFGRF+DM++VF+S
Sbjct: 1   MTRGLKISPNNRFPGQASSMSSHIGTANKIVKEKLTPKQLDLFKRTVFGRFVDMDLVFSS 60

Query: 85  HLVHHVLLRE----------------------------RSLAPRVQRGYIPRM----GLE 144
            LVHH+LLRE                              L P   +  +PR+     L 
Sbjct: 61  PLVHHILLREVKDERPDAMSFNLNGIIATFSKEEFLLVTGLWPSPTKP-VPRVEATKSLG 120

Query: 145 RKYFG-----DTNPSAPLKLEKLEEKYKELQFETDEDAVRVTLVYYTEVAMMGKNKTKSV 186
            KYFG     D NP         EE+YK L F  D DAV+VTLVYYTE+AMMGK++TKS+
Sbjct: 121 TKYFGNELVVDMNPLT------FEERYKNLNFYDDLDAVKVTLVYYTELAMMGKDRTKSI 180

BLAST of Spg028976 vs. ExPASy TrEMBL
Match: A0A1S3ATU8 (uncharacterized protein LOC103482899 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482899 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.8e-28
Identity = 85/198 (42.93%), Postives = 112/198 (56.57%), Query Frame = 0

Query: 25  MAHAMKIAEADQFSTQVTCL-YHIGNANEIVSHKLNARRRNMFRRTVFGRFLDMNIVFNS 84
           M   +KI+  ++F  Q + +  HIG AN+IV  KL  ++ ++F+RTVFGRF+DM++VF+S
Sbjct: 84  MTRGLKISPNNRFPGQASSMSSHIGTANKIVKEKLTPKQLDLFKRTVFGRFVDMDLVFSS 143

Query: 85  HLVHHVLLRE----------------------------RSLAP---RVQRGYIPRMGLER 144
            LVHH+LLRE                              L P   +  R       L  
Sbjct: 144 PLVHHILLREVKDERPDAMSFNLNGIIATFSKEEFLLVTGLWPSPTKSVRRVEASKSLGT 203

Query: 145 KYFG-----DTNPSAPLKLEKLEEKYKELQFETDEDAVRVTLVYYTEVAMMGKNKTKSVV 186
           KYFG     D NP         EE+YK L F  D DAV+VTLVYYTE+AMMGK++TKS++
Sbjct: 204 KYFGNELVVDMNPIT------FEERYKNLNFYDDLDAVKVTLVYYTELAMMGKDRTKSII 263

BLAST of Spg028976 vs. ExPASy TrEMBL
Match: A0A1S3AUB0 (uncharacterized protein LOC103482899 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482899 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.8e-28
Identity = 85/198 (42.93%), Postives = 112/198 (56.57%), Query Frame = 0

Query: 25  MAHAMKIAEADQFSTQVTCL-YHIGNANEIVSHKLNARRRNMFRRTVFGRFLDMNIVFNS 84
           M   +KI+  ++F  Q + +  HIG AN+IV  KL  ++ ++F+RTVFGRF+DM++VF+S
Sbjct: 82  MTRGLKISPNNRFPGQASSMSSHIGTANKIVKEKLTPKQLDLFKRTVFGRFVDMDLVFSS 141

Query: 85  HLVHHVLLRE----------------------------RSLAP---RVQRGYIPRMGLER 144
            LVHH+LLRE                              L P   +  R       L  
Sbjct: 142 PLVHHILLREVKDERPDAMSFNLNGIIATFSKEEFLLVTGLWPSPTKSVRRVEASKSLGT 201

Query: 145 KYFG-----DTNPSAPLKLEKLEEKYKELQFETDEDAVRVTLVYYTEVAMMGKNKTKSVV 186
           KYFG     D NP         EE+YK L F  D DAV+VTLVYYTE+AMMGK++TKS++
Sbjct: 202 KYFGNELVVDMNPIT------FEERYKNLNFYDDLDAVKVTLVYYTELAMMGKDRTKSII 261

BLAST of Spg028976 vs. ExPASy TrEMBL
Match: A0A5A7TGU0 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001140 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.1e-28
Identity = 85/198 (42.93%), Postives = 112/198 (56.57%), Query Frame = 0

Query: 25  MAHAMKIAEADQFSTQVTCL-YHIGNANEIVSHKLNARRRNMFRRTVFGRFLDMNIVFNS 84
           M   +KI+  ++F  Q + +  HIG AN+IV  KL  ++ ++F+RTVFGRF+DM++VF+S
Sbjct: 7   MTRGLKISPNNRFPGQASSMSSHIGTANKIVKEKLTPKQLDLFKRTVFGRFVDMDLVFSS 66

Query: 85  HLVHHVLLRE----------------------------RSLAP---RVQRGYIPRMGLER 144
            LVHH+LLRE                              L P   +  R       L  
Sbjct: 67  PLVHHILLREVKDERPDAMSFNLNGIIATFSKEEFLLVTGLWPSPTKSVRRVEASKSLGT 126

Query: 145 KYFG-----DTNPSAPLKLEKLEEKYKELQFETDEDAVRVTLVYYTEVAMMGKNKTKSVV 186
           KYFG     D NP         EE+YK L F  D DAV+VTLVYYTE+AMMGK++TKS++
Sbjct: 127 KYFGNELVVDMNPIT------FEERYKNLNFCDDLDAVKVTLVYYTELAMMGKDRTKSII 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888550.13.6e-3850.78uncharacterized protein LOC120078361 isoform X1 [Benincasa hispida][more]
XP_038880341.11.1e-3748.44uncharacterized protein LOC120071983 [Benincasa hispida][more]
XP_038896702.12.0e-3648.94uncharacterized protein LOC120084963 [Benincasa hispida][more]
XP_038885808.11.4e-3445.31uncharacterized protein LOC120076102 [Benincasa hispida][more]
XP_038896011.13.5e-3350.93uncharacterized protein LOC120084191 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DSS51.1e-2941.75uncharacterized protein LOC111023969 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A0A0KM591.3e-2843.22DUF1985 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G141180 PE=... [more]
A0A1S3ATU84.8e-2842.93uncharacterized protein LOC103482899 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3AUB04.8e-2842.93uncharacterized protein LOC103482899 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7TGU08.1e-2842.93Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 126..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg028976.1Spg028976.1mRNA