Spg028137 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGTCCCACTCAGCTGCAAAGCTACTGAACAAGCCATTTCCTCACTACGAGGAACTCGCCTTCGTGTTTGGCAAGGATCGGGCTAGTGGATCGGGGTGGAATGTACCAGCGAAACAAGCTGCAGAAAATGTTCCAGTGGACGCGGAGGGAGATTGCAACTTCCAGGAGACACAGGATTATTCTGTCCCCATCCCTCCAGTAGAAAATTTGGCCACGGATGTCGAGTTTGAGGACGTCCCCATAACGCCCACGAACCGACCGAGCTCCTCGCAGGGACGGAAGAGGAGTAGAGAATCATATGAAGCAGAAGCCCTGGAAATAATGAGGCAGGCAGTCAGCATACAGGAGATACAATTCGCAAAAGTGCTAACTGGTCAGACACGTGATAAAGGTAAAAAATATACCTATTTTACCCTTATATTTAGCTCATTTCTTGGTCAAATATTGAGTGTTTAGGTCAATTTACTGTTCCCGAGCTCAAAATATGCTTAGTTTGATACGTTAGGGTGTTGAGAGTCACTTTTGTTGAATTATGCTTATTTTTGCTTAAAAAGACTTGATTTTAAGAGAATTTGACTTAGTTTGCTGCTGTGCAGAAAAACAGAGGAAAAGCTGGAATTCCCCAGAAATGCGAGAAGGCAAAAATGAAACGCGACCGCATTTCTGGAAAAACAGAGGCCGTTCCGAGTCGCACGCGGGTCGTTGTTGACGAGTCTTCTTCGCACCTAACAGGTTGTTTTGACCTCGAAACTGACTGGGCAACCTTCCAGCACCTATTTCGCAGCTCCTCAACCAATTTCTACACTATATAAGCTCGAGATTCGAAGTCAAATCCAAGCAGAACTCACTTGGAAGAAAAGGGTGGTGACAGAACCCTAGCTCGACGCCAATGAGTAGGGATGCCCGAGGTCCTTCTTAGATGACCAAATTCTAACCCGAGAGAGAGTTGGACATCAAACCTTGTGGTTTGTAGAGAGTTTCAGCCATTCCCATCTTGTAAAAGTGAGAGAGTGGAGTGTCTTAGCGAACTCTAGAAGGATTGTGTAAACAAAAAACCCATAATATTTAGCTATCTCTTTTATTTCCAGCTTGTGATTACTTTTCATTATTCTGTATTCTTTACATTATTATTTCAATGAAAATGTGTTCATTTGCTTTTTATCCCATCATGTGTAGCTAAATCCCGTTGAGGGGTTCAATATGGTGAATTCCCTTAGGGTTTAATGGCTTGAAAGTGTTTTATTTGCTTAAGTTGTGTCTCATGCATGTCATTCTTTATTGAATATCATTCTGATCTTGCTGAGTTTAATTTGATCACTTAGACTTTGCATGCTATGTGAGTTTGATCTCGAAAGGGACAAACGATATCGGTTCTCATAAAGGTGATATAGGAGAAAAAACTCAAAAGAGATTGTTCGACGGTATAAGGCAAGCTGCCTAAGGCACCCTATATCGACTATAGGGTTATAGGTTGCATTCGTGAATTATCTATGTCGGAGTCGAGTCCCAGAAATGGGCATAACGGTACTCGCTTAGCCTTCTTACGGTTTTTGGAAACAAAGGCCAAATGGAAGTTAAATCTGACCCAATGCATTAAATACACTTAAGTTAGATATTGCATAAGTATGGTTGTTACCTTAGGGTTGAATCCATGTTGAATACCTCGTTTTATCTTATTGTTATTCTTCATTATTTTATTTGCACGTTTTGTTTATCTTTTCAAAAACCCAATCAATCAAATTATTTTCTTTGGTTACCTTTTTCAAAAGCAATCATTTGAGCAGTTTCTTCATCAAATATGAATTTCCAATTTAGTCCTCGTGGGATCGATACCCTTGGAATACTTTCTAAGGTTTTTTATTACTACGTGCGACAGTGTATACTTGCACTTAAGTGTTGGCTGAATATTTCTTTCTTATTATTATCCATCTTATCTCACATTCCATCCATTAAGTTCACACACGCACCAAGTTTTTGACGCTGTTACCGGGGACCAAAAATGAAACCAGATTTGTTTTCGAAATTGCGATCAGATTGCGATCGCATTTCTGTCTCAAAGGGAATTTGACTTCGGGTTGCAATTGTTTTTCTTTTGCAGGTTGAAGTTAGTGCATGAGCAAGGGGTATCCACTCATTGACATTGATCCATAGATAGAAAGAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAGGAGCAACAAGAGTTGAGCGCACGGGAATTTCTAGAGGAAGCATCTTACATTCAAGAGTTTCCAATGGATCCTCCTGGAGTCGAGCCTCAAGTTGATCCACAAGTTCGTGGAAGGGAGCAGAATGACAGGAGAATTCCTCCTGTTCCTCCAGTTCCACCAGTGCCACAACAAGAAAACCCAATTTACATTGCTGAAGATTGA ATGCAGTCCCACTCAGCTGCAAAGCTACTGAACAAGCCATTTCCTCACTACGAGGAACTCGCCTTCGTGTTTGGCAAGGATCGGGCTAGTGGATCGGGGTGGAATGTACCAGCGAAACAAGCTGCAGAAAATGTTCCAGTGGACGCGGAGGGAGATTGCAACTTCCAGGAGACACAGGATTATTCTGTCCCCATCCCTCCAGTAGAAAATTTGGCCACGGATGTCGAGTTTGAGGACGTCCCCATAACGCCCACGAACCGACCGAGCTCCTCGCAGGGACGGAAGAGGAGTAGAGAATCATATGAAGCAGAAGCCCTGGAAATAATGAGGCAGGCAGTCAGCATACAGGAGATACAATTCGCAAAAAAAAACAGAGGAAAAGCTGGAATTCCCCAGAAATGCGAGAAGGCAAAAATGAAACGCGACCGCATTTCTGGAAAAACAGAGGCCGTTCCGAGTCGCACGCGGGTCGTTGTTGACGAGTCTTCTTCGCACCTAACAGAAAGAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAGGAGCAACAAGAGTTGAGCGCACGGGAATTTCTAGAGGAAGCATCTTACATTCAAGAGTTTCCAATGGATCCTCCTGGAGTCGAGCCTCAAGTTGATCCACAAGTTCGTGGAAGGGAGCAGAATGACAGGAGAATTCCTCCTGTTCCTCCAGTTCCACCAGTGCCACAACAAGAAAACCCAATTTACATTGCTGAAGATTGA ATGCAGTCCCACTCAGCTGCAAAGCTACTGAACAAGCCATTTCCTCACTACGAGGAACTCGCCTTCGTGTTTGGCAAGGATCGGGCTAGTGGATCGGGGTGGAATGTACCAGCGAAACAAGCTGCAGAAAATGTTCCAGTGGACGCGGAGGGAGATTGCAACTTCCAGGAGACACAGGATTATTCTGTCCCCATCCCTCCAGTAGAAAATTTGGCCACGGATGTCGAGTTTGAGGACGTCCCCATAACGCCCACGAACCGACCGAGCTCCTCGCAGGGACGGAAGAGGAGTAGAGAATCATATGAAGCAGAAGCCCTGGAAATAATGAGGCAGGCAGTCAGCATACAGGAGATACAATTCGCAAAAAAAAACAGAGGAAAAGCTGGAATTCCCCAGAAATGCGAGAAGGCAAAAATGAAACGCGACCGCATTTCTGGAAAAACAGAGGCCGTTCCGAGTCGCACGCGGGTCGTTGTTGACGAGTCTTCTTCGCACCTAACAGAAAGAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAGGAGCAACAAGAGTTGAGCGCACGGGAATTTCTAGAGGAAGCATCTTACATTCAAGAGTTTCCAATGGATCCTCCTGGAGTCGAGCCTCAAGTTGATCCACAAGTTCGTGGAAGGGAGCAGAATGACAGGAGAATTCCTCCTGTTCCTCCAGTTCCACCAGTGCCACAACAAGAAAACCCAATTTACATTGCTGAAGATTGA MQSHSAAKLLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPSSSQGRKRSRESYEAEALEIMRQAVSIQEIQFAKKNRGKAGIPQKCEKAKMKRDRISGKTEAVPSRTRVVVDESSSHLTERTFRRRRKEQRRKKEQQELSAREFLEEASYIQEFPMDPPGVEPQVDPQVRGREQNDRRIPPVPPVPPVPQQENPIYIAED Homology
BLAST of Spg028137 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia]) HSP 1 Score: 84.3 bits (207), Expect = 1.6e-12 Identity = 58/148 (39.19%), Postives = 84/148 (56.76%), Query Frame = 0
BLAST of Spg028137 vs. NCBI nr
Match: KAA0049246.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 60.8 bits (146), Expect = 1.9e-05 Identity = 40/112 (35.71%), Postives = 58/112 (51.79%), Query Frame = 0
BLAST of Spg028137 vs. NCBI nr
Match: KAA0025495.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 58.9 bits (141), Expect = 7.1e-05 Identity = 46/124 (37.10%), Postives = 63/124 (50.81%), Query Frame = 0
BLAST of Spg028137 vs. NCBI nr
Match: KAA0031555.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0043921.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047622.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049406.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 58.5 bits (140), Expect = 9.2e-05 Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 0
BLAST of Spg028137 vs. NCBI nr
Match: KAA0038065.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 58.5 bits (140), Expect = 9.2e-05 Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 0
BLAST of Spg028137 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 7.6e-13 Identity = 58/148 (39.19%), Postives = 84/148 (56.76%), Query Frame = 0
BLAST of Spg028137 vs. ExPASy TrEMBL
Match: A0A5A7U4P8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G004860 PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 9.0e-06 Identity = 40/112 (35.71%), Postives = 58/112 (51.79%), Query Frame = 0
BLAST of Spg028137 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 4.5e-05 Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 0
BLAST of Spg028137 vs. ExPASy TrEMBL
Match: A0A5A7T9G6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002710 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 4.5e-05 Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 0
BLAST of Spg028137 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 5.8e-05 Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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