Spg028137 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg028137
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Locationscaffold2: 41840828 .. 41843230 (+)
RNA-Seq ExpressionSpg028137
SyntenySpg028137
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTCCCACTCAGCTGCAAAGCTACTGAACAAGCCATTTCCTCACTACGAGGAACTCGCCTTCGTGTTTGGCAAGGATCGGGCTAGTGGATCGGGGTGGAATGTACCAGCGAAACAAGCTGCAGAAAATGTTCCAGTGGACGCGGAGGGAGATTGCAACTTCCAGGAGACACAGGATTATTCTGTCCCCATCCCTCCAGTAGAAAATTTGGCCACGGATGTCGAGTTTGAGGACGTCCCCATAACGCCCACGAACCGACCGAGCTCCTCGCAGGGACGGAAGAGGAGTAGAGAATCATATGAAGCAGAAGCCCTGGAAATAATGAGGCAGGCAGTCAGCATACAGGAGATACAATTCGCAAAAGTGCTAACTGGTCAGACACGTGATAAAGGTAAAAAATATACCTATTTTACCCTTATATTTAGCTCATTTCTTGGTCAAATATTGAGTGTTTAGGTCAATTTACTGTTCCCGAGCTCAAAATATGCTTAGTTTGATACGTTAGGGTGTTGAGAGTCACTTTTGTTGAATTATGCTTATTTTTGCTTAAAAAGACTTGATTTTAAGAGAATTTGACTTAGTTTGCTGCTGTGCAGAAAAACAGAGGAAAAGCTGGAATTCCCCAGAAATGCGAGAAGGCAAAAATGAAACGCGACCGCATTTCTGGAAAAACAGAGGCCGTTCCGAGTCGCACGCGGGTCGTTGTTGACGAGTCTTCTTCGCACCTAACAGGTTGTTTTGACCTCGAAACTGACTGGGCAACCTTCCAGCACCTATTTCGCAGCTCCTCAACCAATTTCTACACTATATAAGCTCGAGATTCGAAGTCAAATCCAAGCAGAACTCACTTGGAAGAAAAGGGTGGTGACAGAACCCTAGCTCGACGCCAATGAGTAGGGATGCCCGAGGTCCTTCTTAGATGACCAAATTCTAACCCGAGAGAGAGTTGGACATCAAACCTTGTGGTTTGTAGAGAGTTTCAGCCATTCCCATCTTGTAAAAGTGAGAGAGTGGAGTGTCTTAGCGAACTCTAGAAGGATTGTGTAAACAAAAAACCCATAATATTTAGCTATCTCTTTTATTTCCAGCTTGTGATTACTTTTCATTATTCTGTATTCTTTACATTATTATTTCAATGAAAATGTGTTCATTTGCTTTTTATCCCATCATGTGTAGCTAAATCCCGTTGAGGGGTTCAATATGGTGAATTCCCTTAGGGTTTAATGGCTTGAAAGTGTTTTATTTGCTTAAGTTGTGTCTCATGCATGTCATTCTTTATTGAATATCATTCTGATCTTGCTGAGTTTAATTTGATCACTTAGACTTTGCATGCTATGTGAGTTTGATCTCGAAAGGGACAAACGATATCGGTTCTCATAAAGGTGATATAGGAGAAAAAACTCAAAAGAGATTGTTCGACGGTATAAGGCAAGCTGCCTAAGGCACCCTATATCGACTATAGGGTTATAGGTTGCATTCGTGAATTATCTATGTCGGAGTCGAGTCCCAGAAATGGGCATAACGGTACTCGCTTAGCCTTCTTACGGTTTTTGGAAACAAAGGCCAAATGGAAGTTAAATCTGACCCAATGCATTAAATACACTTAAGTTAGATATTGCATAAGTATGGTTGTTACCTTAGGGTTGAATCCATGTTGAATACCTCGTTTTATCTTATTGTTATTCTTCATTATTTTATTTGCACGTTTTGTTTATCTTTTCAAAAACCCAATCAATCAAATTATTTTCTTTGGTTACCTTTTTCAAAAGCAATCATTTGAGCAGTTTCTTCATCAAATATGAATTTCCAATTTAGTCCTCGTGGGATCGATACCCTTGGAATACTTTCTAAGGTTTTTTATTACTACGTGCGACAGTGTATACTTGCACTTAAGTGTTGGCTGAATATTTCTTTCTTATTATTATCCATCTTATCTCACATTCCATCCATTAAGTTCACACACGCACCAAGTTTTTGACGCTGTTACCGGGGACCAAAAATGAAACCAGATTTGTTTTCGAAATTGCGATCAGATTGCGATCGCATTTCTGTCTCAAAGGGAATTTGACTTCGGGTTGCAATTGTTTTTCTTTTGCAGGTTGAAGTTAGTGCATGAGCAAGGGGTATCCACTCATTGACATTGATCCATAGATAGAAAGAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAGGAGCAACAAGAGTTGAGCGCACGGGAATTTCTAGAGGAAGCATCTTACATTCAAGAGTTTCCAATGGATCCTCCTGGAGTCGAGCCTCAAGTTGATCCACAAGTTCGTGGAAGGGAGCAGAATGACAGGAGAATTCCTCCTGTTCCTCCAGTTCCACCAGTGCCACAACAAGAAAACCCAATTTACATTGCTGAAGATTGA

mRNA sequence

ATGCAGTCCCACTCAGCTGCAAAGCTACTGAACAAGCCATTTCCTCACTACGAGGAACTCGCCTTCGTGTTTGGCAAGGATCGGGCTAGTGGATCGGGGTGGAATGTACCAGCGAAACAAGCTGCAGAAAATGTTCCAGTGGACGCGGAGGGAGATTGCAACTTCCAGGAGACACAGGATTATTCTGTCCCCATCCCTCCAGTAGAAAATTTGGCCACGGATGTCGAGTTTGAGGACGTCCCCATAACGCCCACGAACCGACCGAGCTCCTCGCAGGGACGGAAGAGGAGTAGAGAATCATATGAAGCAGAAGCCCTGGAAATAATGAGGCAGGCAGTCAGCATACAGGAGATACAATTCGCAAAAAAAAACAGAGGAAAAGCTGGAATTCCCCAGAAATGCGAGAAGGCAAAAATGAAACGCGACCGCATTTCTGGAAAAACAGAGGCCGTTCCGAGTCGCACGCGGGTCGTTGTTGACGAGTCTTCTTCGCACCTAACAGAAAGAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAGGAGCAACAAGAGTTGAGCGCACGGGAATTTCTAGAGGAAGCATCTTACATTCAAGAGTTTCCAATGGATCCTCCTGGAGTCGAGCCTCAAGTTGATCCACAAGTTCGTGGAAGGGAGCAGAATGACAGGAGAATTCCTCCTGTTCCTCCAGTTCCACCAGTGCCACAACAAGAAAACCCAATTTACATTGCTGAAGATTGA

Coding sequence (CDS)

ATGCAGTCCCACTCAGCTGCAAAGCTACTGAACAAGCCATTTCCTCACTACGAGGAACTCGCCTTCGTGTTTGGCAAGGATCGGGCTAGTGGATCGGGGTGGAATGTACCAGCGAAACAAGCTGCAGAAAATGTTCCAGTGGACGCGGAGGGAGATTGCAACTTCCAGGAGACACAGGATTATTCTGTCCCCATCCCTCCAGTAGAAAATTTGGCCACGGATGTCGAGTTTGAGGACGTCCCCATAACGCCCACGAACCGACCGAGCTCCTCGCAGGGACGGAAGAGGAGTAGAGAATCATATGAAGCAGAAGCCCTGGAAATAATGAGGCAGGCAGTCAGCATACAGGAGATACAATTCGCAAAAAAAAACAGAGGAAAAGCTGGAATTCCCCAGAAATGCGAGAAGGCAAAAATGAAACGCGACCGCATTTCTGGAAAAACAGAGGCCGTTCCGAGTCGCACGCGGGTCGTTGTTGACGAGTCTTCTTCGCACCTAACAGAAAGAACCTTTCGTCGTCGAAGGAAGGAACAAAGACGAAAGAAGGAGCAACAAGAGTTGAGCGCACGGGAATTTCTAGAGGAAGCATCTTACATTCAAGAGTTTCCAATGGATCCTCCTGGAGTCGAGCCTCAAGTTGATCCACAAGTTCGTGGAAGGGAGCAGAATGACAGGAGAATTCCTCCTGTTCCTCCAGTTCCACCAGTGCCACAACAAGAAAACCCAATTTACATTGCTGAAGATTGA

Protein sequence

MQSHSAAKLLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPSSSQGRKRSRESYEAEALEIMRQAVSIQEIQFAKKNRGKAGIPQKCEKAKMKRDRISGKTEAVPSRTRVVVDESSSHLTERTFRRRRKEQRRKKEQQELSAREFLEEASYIQEFPMDPPGVEPQVDPQVRGREQNDRRIPPVPPVPPVPQQENPIYIAED
Homology
BLAST of Spg028137 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-12
Identity = 58/148 (39.19%), Postives = 84/148 (56.76%), Query Frame = 0

Query: 1   MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQ 60
           ++SH  AK L NKP PHY++L   FGKDRA+G+  + P   A+      AE D +F E Q
Sbjct: 25  VKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPVDMASSAAATIAE-DAHF-EAQ 84

Query: 61  DYSVPIPPVENLATDVEFEDVPITPTNRP---SSSQGRKRSRESYEAEALEIMRQAVSIQ 120
           D+ +P PP+ N   D   ED+P TPT++P   +SS G KR R  Y +E ++++R  + +Q
Sbjct: 85  DFYIPDPPMFNTTEDAIEEDLPNTPTSKPTIGTSSGGSKRKRSGYTSEMVDVVRTNMRMQ 144

Query: 121 EIQFAKKNRGKAGIPQKCEKAKMKRDRI 145
                K     A  P K E+ K+ R +I
Sbjct: 145 TAHLEK----MATWPDKKEEKKIARRKI 165

BLAST of Spg028137 vs. NCBI nr
Match: KAA0049246.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-05
Identity = 40/112 (35.71%), Postives = 58/112 (51.79%), Query Frame = 0

Query: 3   SHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDY 62
           SH AAK LLNK F HY+EL++VFGKDRA+G G    A   + + P    G  +     D+
Sbjct: 111 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGGAESFADIGSNDPPGYDAGAADAMPDTDF 170

Query: 63  SVPIPPVENLATDVEFEDVPITPTNRPSSSQGRKRSRESYEAEALEIMRQAV 114
                P  N++ D   E      + R + S G KR R  +  ++ +I+R A+
Sbjct: 171 PPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAI 222

BLAST of Spg028137 vs. NCBI nr
Match: KAA0025495.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 7.1e-05
Identity = 46/124 (37.10%), Postives = 63/124 (50.81%), Query Frame = 0

Query: 3   SHSAAK-LLNKPFPHYEELAFVFGKDRASGS--------GWNVPAKQAAENVPVDAEGDC 62
           SH  AK LLNK F HY+EL++VFGKDRA+G         G N PA   A   P DA  D 
Sbjct: 111 SHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNHPAGYDA--FPADAAPDT 170

Query: 63  NFQETQDYSVPIPPVENLATDVEFEDVPITPTNRPSS----SQGRKRSRESYEAEALEIM 114
           +F          PP+ +L  ++  +D+  T T R S     S G KR    +  ++ +I+
Sbjct: 171 DF----------PPMYSLGLNMSADDLMETRTARVSERRNVSSGSKRKHPGHATDSGDIV 222

BLAST of Spg028137 vs. NCBI nr
Match: KAA0031555.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0043921.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047622.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049406.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 9.2e-05
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 0

Query: 1   MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQ 60
           ++SH AAK LLNKPFP+Y+EL +VFG+DRA+G      A+  A+    +  G  +  +  
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRF----AETFADVGSNEPGGGYDRFDMG 171

Query: 61  DYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRKRSRES---YEAEALEI 109
           D +   PPV +   D+  +DV  +  +R S     S G KR R S   +E EA+ +
Sbjct: 172 DGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHV 223

BLAST of Spg028137 vs. NCBI nr
Match: KAA0038065.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 9.2e-05
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 0

Query: 1   MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQ 60
           ++SH AAK LLNKPFP+Y+EL +VFG+DRA+G      A+  A+    +  G  +  +  
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRF----AETFADVGSNEPGGGYDRFDMG 171

Query: 61  DYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRKRSRES---YEAEALEI 109
           D +   PPV +   D+  +DV  +  +R S     S G KR R S   +E EA+ +
Sbjct: 172 DGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHV 223

BLAST of Spg028137 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.6e-13
Identity = 58/148 (39.19%), Postives = 84/148 (56.76%), Query Frame = 0

Query: 1   MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQ 60
           ++SH  AK L NKP PHY++L   FGKDRA+G+  + P   A+      AE D +F E Q
Sbjct: 25  VKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPVDMASSAAATIAE-DAHF-EAQ 84

Query: 61  DYSVPIPPVENLATDVEFEDVPITPTNRP---SSSQGRKRSRESYEAEALEIMRQAVSIQ 120
           D+ +P PP+ N   D   ED+P TPT++P   +SS G KR R  Y +E ++++R  + +Q
Sbjct: 85  DFYIPDPPMFNTTEDAIEEDLPNTPTSKPTIGTSSGGSKRKRSGYTSEMVDVVRTNMRMQ 144

Query: 121 EIQFAKKNRGKAGIPQKCEKAKMKRDRI 145
                K     A  P K E+ K+ R +I
Sbjct: 145 TAHLEK----MATWPDKKEEKKIARRKI 165

BLAST of Spg028137 vs. ExPASy TrEMBL
Match: A0A5A7U4P8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G004860 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.0e-06
Identity = 40/112 (35.71%), Postives = 58/112 (51.79%), Query Frame = 0

Query: 3   SHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQDY 62
           SH AAK LLNK F HY+EL++VFGKDRA+G G    A   + + P    G  +     D+
Sbjct: 111 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGGAESFADIGSNDPPGYDAGAADAMPDTDF 170

Query: 63  SVPIPPVENLATDVEFEDVPITPTNRPSSSQGRKRSRESYEAEALEIMRQAV 114
                P  N++ D   E      + R + S G KR R  +  ++ +I+R A+
Sbjct: 171 PPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAI 222

BLAST of Spg028137 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-05
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 0

Query: 1   MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQ 60
           ++SH AAK LLNKPFP+Y+EL +VFG+DRA+G      A+  A+    +  G  +  +  
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRF----AETFADVGSNEPGGGYDRFDMG 171

Query: 61  DYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRKRSRES---YEAEALEI 109
           D +   PPV +   D+  +DV  +  +R S     S G KR R S   +E EA+ +
Sbjct: 172 DGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHV 223

BLAST of Spg028137 vs. ExPASy TrEMBL
Match: A0A5A7T9G6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002710 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.5e-05
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 0

Query: 1   MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQ 60
           ++SH AAK LLNKPFP+Y+EL +VFG+DRA+G      A+  A+    +  G  +  +  
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRF----AETFADVGSNEPGGGYDRFDMG 171

Query: 61  DYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRKRSRES---YEAEALEI 109
           D +   PPV +   D+  +DV  +  +R S     S G KR R S   +E EA+ +
Sbjct: 172 DGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHV 223

BLAST of Spg028137 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-05
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 0

Query: 1   MQSHSAAK-LLNKPFPHYEELAFVFGKDRASGSGWNVPAKQAAENVPVDAEGDCNFQETQ 60
           ++SH AAK LLNKPFP+Y+EL +VFG+DRA+G      A+  A+    +  G  +  +  
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRF----AETFADVGSNEPGGGYDRFDMG 171

Query: 61  DYSVPIPPVENLATDVEFEDVPITPTNRPS----SSQGRKRSRES---YEAEALEI 109
           D +   PPV +   D+  +DV  +  +R S     S G KR R S   +E EA+ +
Sbjct: 172 DGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHL 223

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158565.11.6e-1239.19uncharacterized protein LOC111025018 [Momordica charantia][more]
KAA0049246.11.9e-0535.71retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0025495.17.1e-0537.10retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0031555.19.2e-0537.07retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon... [more]
KAA0038065.19.2e-0537.07retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DW737.6e-1339.19uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5A7U4P89.0e-0635.71Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CWL24.5e-0537.07Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T9G64.5e-0537.07Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TRV15.8e-0537.07Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 175..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..248
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..189
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg028137.1Spg028137.1mRNA