Spg027446 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg027446
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold7: 43300631 .. 43306218 (-)
RNA-Seq Expression	Spg027446
Synteny	Spg027446

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGTCAATCTAAAAGAACGTCAAGCCAGCATGCCGATCATCCAAGGAGATCAATAACTCACAATAGGCCGATCCAAAAGATCATTAAGCCAGTAGGTCGATCATCCAAGAAGATCAACAAGCCAATGAGCCGATGCAAGAGAGCATCAAACCAACAAGCCAATCCAAGAGATCATGAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAGCCCAACAAACCGGCCCAAGAAGAGCAACAAGGTAGAGGCCAAAGTTTATATATTTGTGAGAAAGAATTAGAGGATAAATATTACAGACTGTAAAACTTATACATTCAAATTCAATAAAATCAAGTTAATTTCCACGAATCAAATTTCCCCTGTTGAAATCTCGTGTGAACAAATTGGCACGCCCAGTGGGACAATCTCTACCTCTCATCTCTTTTTTCTCGAAAAAGAAATCACAACTTTCGAATAAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTCCTATGTGGAGCCAATTACTCGCAGTCGCTTCAATGAAATCCAACAGGAAGACAACCAAACTTCTGTCATTGCAAACAAGATGTTGAGACGCATGACGGAATCTACTCAACTTGAAATTGCCACTACACAAAATCTAATGCTTGGCAAATTCATCTGTTATTCTCAGGAACCAAACGAAACATCGAGTCCTGATGTGATGTCTGTTACGATGACTGATGCAGGAACTGGTGAAGAACGAATGGCTGAAGTTCAGAAGAAAATAAGCATGTTACTGAAGATGGTCAAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGAGATGTCGCTGAATTGAGTCAGACCCCTAGCATCAAAGACAAGGGAAAGATTATTGCACTAGATCAATCACAACATTCCACTTCTATTGCTTCATTGTCCGTCCAGCAGCTCCAAGATATGATCATGAACTTCATCAGAGCTCAATATGGTTGACCGACTCAAAATTCTCTATTGTACTCCAAGCCATATACCAAGAAAATCGACAATCTGAGAATGCCTAATGGATACCAACCACCAAAGTTTCAACAATTCGACGAGAAGGGCAATCCAAAACAACACGTTGCTCATTTCTTCGAGACATGTGAAAATGCTGGTACTAGAGGAGACCTACTGGTCAAGCAGTTCGTACAAACACTGAAGGGAAATGCTTTCGACTGGTATACCGACCTTGAGCCTGAGACTATTGATAGTTGGGAACAACTTGAGAAGGAGTTCCTTAACTTCGTCTACAGTATAAGGCGAACCGTCAGCATGTTAGAGCTGACTAATGCCAAACAAAGAAAAGATGAACCAGTTGCTGACTACATCAATCGTTGGAGAGCTCTAAGCCTAGACTGCAAGGACCAACTCACAGAAGTGTCTTCTATTGAAATGTGCATCCAAGGCATGCATTGGGGACTTCTCTATATTCTACAAGGAATAAAACCTCGTACTTTTGAAGAATTAGCAACACGCGCCCACGATATGGAGTTAAGTATTGTTAGTCGAGGAGATAAAGACATTCTACTCTCTAATATGAAGAAAGACGAAAAGAACATTGAAGCAACCATAGAAGAATCTATTGTTGTAAATACAACCCCTCTCGAGTTGTCTTCAAAAGAAAAACACAAGACGATCGAAAACCAACAAGGAAATGAAAGGCATCGCTTGACTTTGAAGGAAAGACAGAAAAAGATCTATCATTTTCCTAATTCCGACGTTCCTGACATGTTAGAACAACTACTGGAAACGCGGTTGATAGAACTTCTCGAGTGTAAACGACCAGAAGAGATGGAAAAGCTCGATGATCCCAACTACTGCAAGTATCACCGAGTTATCAGCCACCCGGTAGAAAAATGTTTTGTCCTGAAAGAGCTAATTCTGAGGCTAGCTAAAGAAGGAAAAATCGAGTTGGGCATTGAGTAAGTAGCTCAGTCAAATCATGTTGCAATAGCAATAAACACTTGCAATCAAATGTGTTTTGATTCGCTTTATTGTCAAGAAATACAACTACTCCAATTTGGAACCTTGGAGCCTATAGCTAATTGGTTTAACCATGAGGTATCAGGAGACAAATCTCAAGATACGGTCAATCTTGTCGTCCATGAAGATAAAGGAAGTACTATCATGACTCGTAAGAAGAAACAAGGACGACATCTCGTTCAAAAAGTATGTTGCTCGTCCAAAAGAATGAATAAACATCGAAGACCGAAGAATCCAAGGAAACCTAAACTTGAGAAAGAAAGAAATCAAGATCCTTCTCAACATCGCCAATTGGTAACCTTAAAAGAATCATCCTTGAGAACTTTTTGTCCCATCAAGAAAGTGGAAGAAAATTTTGCAAGTTCATGTTATATCAACGTAGAAGAAGATGGTGGATCGAAGGAAATCAAGCATAGGACTTCTGTCTTTGATCGCATTGAGCCTTCAACTACTCGACCTTCGGTTTTCCAAAGAATGAGTATGGCTACAGCAGGAGAAGAATATCAAAGCTTGATGTCCACCATCACTCGACATTCAGCTTTCCAAAGACTAAACGTCTCTGCATCAAGAAAGAGTCGACTTTCAACATCTGTTTTTGATACCCTCAAAGTAACAAGCGATCGACATGAAAGAAAGATGGACAACTTGAAAGCTAACTTATTCGATGAAATAAACAATGACAATAAGCTTCACAGTACCACGCCGTCACGTATGAAGAGAAAAGTTTTTGTTCTCATAAACACAGAAGGTTCCTTGAAAATGAAGCCAAATCTTATCATCTTGACAAATCCTACAAATGAAGGACCTAATCAAGACTATGGTGAAGAAAAAGACACTTAAAATGTAAATGCTCCATATCGCAAGAGTCTAAACTACATGATACTTCTGGCCCGCATGAGTTAAAAAGGTGAGCAGCCAAAAAAAAAAAAATCAAATTTGTACCTTGAACTTCATTATGACTTGATCCCTTTTCTTCAAGGGTACGTAGACAGCTTAAAGAAAACTTCAAGTTCAGTCATTGCAAACAAAAAAAAAAAGTGCCACAAATATCGAAGCATGACAATACAAGTTAAAGTTGCTTACCCTTACTGGGGGCAACACAGTAAATTGAAGACGTACATTGCTTCTCTCTCGATTCCTTCTCTCTCAACCGACCACAGCCACAAACCTCCCTCTCCTCTCCGACTTCGCTCTCCCTTGGTTCTCTCTCGTCTTCTCCCTCTGATGTGTTCTCTCTCGTTTTCCCCTTCTCTCTCAATCAACATTCTCCCAGATGTCTTCTCCCTCTCAACCCTTTCTCCCTCTCCCATATGCCGTCGCCGTCATCTTTCAGATCGATATGCATTGTGAGGGTTGTGCTAAAAAAGTGAAACGAGCTGTGAAGCGTTTGGATGGTAAATATTGATTGAAAGTTGAATTGCTTCTGTGTTTTCGAATTTTCCACCCAACTTTTAACTACTTGTTCTAGAACCAATTTTGTTCGATCTTCTTCTTTCTTTTTTGATTTGGCGAATGAACTGGAATTTCTCAACTTGCATTTTCTGATTTTCAATAATTTTCCTATGGATCTGTTCAAATATGGTTTCGAATAGGTTTTACTTGATGATCTTTTCAATCTTTGTTTGGTCACAGTGAGGAGGTTGATTAAGTTGAATGGATTTTTAGAAGGAAGAGAAAAAAATATTGATTGTTCTTCTGTGATCTATAGTTTTTACTATCGTTACATCAACTTAGCTTGCTGCTAATCTTGGCTGTTTGATTATGTAAAATAAGACTTGCTTTTGTTTGATGGATGTATTTGCTTGAATTTCTGGCAGAGGTGTCTGATAAGAAACAAGTTTTTAATGTGTTTCATTACCTAGTTTTTGTGGATACCAAACATTTTACTAGTATTTTTTTCTTGTGTCAAATTTTCATGTTGTATTTAACATAAATCTTAAACTTCCCACTTCAAACTTGGTATTAAATTTGATACACGTAGCTTGTAACATGGGTTTACTTGAAGTATGATGAATTTTTTTGAAGTGCGACATGAAAATTAAATTGACTGAAAGATGCATGAAGATTAACCATAAGGTTGGACCTAAGAGTAAAATATGTCATTTCAAACTTGAAAGCTTGATGAAAATATGGCTAAATTTTTCGTAAAAATTGAGCAAAATGAGACGCTAGAATTGGGAGCATTATCATAGAGGTAAGTAAATAGAAAAGCCAGAAAAAACACTAACCTCCAAAGCTTTTCTATAAATTGGTGGCAGTGTGAGTGTGTGTTCAATTCACATGTTGCTTGATTATGTTTTAGGTTTGGAAGGAAAAATATTTGTTTGTGTTCACTTCAAATGATTTTACTTGTATTTTCCATAACGCCACAGCCTCCCTCGAACGTATGTCGTCTTTCTTCCGTTTGTTGTTTTTCGATCTTATCTTTGCTCTTTCGTGCTACGTTTTCGGTAACGTGAGTTGCCTCTTGTTTCTATGATTATCGGCATTTAATTACTATATTACTATCACACAGGAAAGATTTCTACCTCTTTCCTTCTGATTATGGCTGAAGAATCCTCCAACTCCATTTATGATTTCACTATCAAGGTATGACCTCCGTTGCTTTTTTCATTTACTCTATTTGTTTGGTTGTTGAGAAACCCTCGGTTTTTTAATGTGAGAATGAAAATCCTCTGTTTGTTGTTGTTCTTTCATCGACTTAGGTTTTCTTGGATAAGTTGGACTTCATTTTGGAAATATCTCAAATGTAATATTGAAATATTTGGGATTATTGGCTTTAAATAGAGAGCGAATGTCTTTGTTTTTTTATTTATTTATTATTGTTTGTTGTTCATTTCGCTGACTTAGGTTTCTTTGTTTAAGTTGTTTTCATTATAATTCGTTTTTACTTCGGAAAATGTTGGTTTAGTTAGCCATTGACTTTGAGAGTATCTAAATTTTGAGATCGAAAATGGATTTGTTTGCACGATATTCATGGGAATTATGTGAGTGATGTGATTCTTAGTCTATACAAGGGGAAGGTTATTCTGATAGTGAATGTTACTTCTCAGTGGTAATTTTTATTTTCTCTTGGAACTATTTGAATGTTTGCTGATGGTTGCGATCTTCTTGTGTTGAAAGCTTCAACTATTCAAATTCACTTCGTTGATAATGATACACACTCACATACACAAAGACAAGAGCATAAGTTGATTTGAAATTATAATTTCATTTTCCTCTTTGCGGTACTTACAAAGTTGATTTCATCTTGCAGGCATTAATTGCATTAAAGAAGGGTGCTCAATTGCTTAAATATGGTCATAAAGAAAAGTCAAAGTTCTTTCCATTAAGGCTTTCTAGTGTGAGCTTGGTTCCAATAATGCTTTTAATTAGTCTTGTAAAAGCTTTATATCCTTTAGATATTTTTAATAGTTATCTTCGTGGGGACAGTAGTGGCGACGTGAAAAATGATCTTCTGGCAACCTCATCGCAAGGAAATGTGTTGTGTCATAAATAA

mRNA sequence

ATGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGTCAATCTAAAAGAACGTCAAGCCAGCATGCCGATCATCCAAGGAGATCAATAACTCACAATAGGCCGATCCAAAAGATCATTAAGCCAGTAGGTCGATCATCCAAGAAGATCAACAAGCCAATGAGCCGATGCAAGAGAGCATCAAACCAACAAGCCAATCCAAGAGATCATGAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAGCCCAACAAACCGGCCCAAGAAGAGCAACAAGGAACTGGTGAAGAACGAATGGCTGAAGTTCAGAAGAAAATAAGCATGTTACTGAAGATGGTCAAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGAGATGTCGCTGAATTGAGAGACAAATCTCAAGATACGGTCAATCTTGTCGTCCATGAAGATAAAGGAAGTACTATCATGACTCGTAAGAAGAAACAAGGACGACATCTCGTTCAAAAAGTATGTTGCTCGTCCAAAAGAATGAATAAACATCGAAGACCGAAGAATCCAAGGAAACCTAAACTTGAGAAAGAAAGAAATCAAGATCCTTCTCAACATCGCCAATTGGTAACCTTAAAAGAATCATCCTTGAGAACTTTTTGTCCCATCAAGAAAGTGGAAGAAAATTTTGCAAGTTCATGTTATATCAACGTAGAAGAAGATGGTGGATCGAAGGAAATCAAGCATAGGACTTCTGTCTTTGATCGCATTGAGCCTTCAACTACTCGACCTTCGGTTTTCCAAAGAATGAGTATGGCTACAGCAGGAGAAGAATATCAAAGCTTGATGTCCACCATCACTCGACATTCAGCTTTCCAAAGACTAAACGTCTCTGCATCAAGAAAGAGTCGACTTTCAACATCTGTTTTTGATACCCTCAAAGTAACAAGCGATCGACATGAAAGAAAGATGGACAACTTGAAAGCTAACTTATTCGATGAAATAAACAATGACAATAAGCTTCACAGTACCACGCCGTCACGTATGAAGAGAAAAGTTTTTATGTCTTCTCCCTCTCAACCCTTTCTCCCTCTCCCATATGCCGTCGCCGTCATCTTTCAGATCGATATGCATTGTGAGGGTTGTGCTAAAAAAGTGAAACGAGCTGTGAAGCGTTTGGATGGAAAGATTTCTACCTCTTTCCTTCTGATTATGGCTGAAGAATCCTCCAACTCCATTTATGATTTCACTATCAAGGCATTAATTGCATTAAAGAAGGGTGCTCAATTGCTTAAATATGGTCATAAAGAAAAGTCAAAGTTCTTTCCATTAAGGCTTTCTAGTGTGAGCTTGGTTCCAATAATGCTTTTAATTAGTCTTGTAAAAGCTTTATATCCTTTAGATATTTTTAATAGTTATCTTCGTGGGGACAGTAGTGGCGACGTGAAAAATGATCTTCTGGCAACCTCATCGCAAGGAAATGTGTTGTGTCATAAATAA

Coding sequence (CDS)

ATGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGTCAATCTAAAAGAACGTCAAGCCAGCATGCCGATCATCCAAGGAGATCAATAACTCACAATAGGCCGATCCAAAAGATCATTAAGCCAGTAGGTCGATCATCCAAGAAGATCAACAAGCCAATGAGCCGATGCAAGAGAGCATCAAACCAACAAGCCAATCCAAGAGATCATGAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAGCCCAACAAACCGGCCCAAGAAGAGCAACAAGGAACTGGTGAAGAACGAATGGCTGAAGTTCAGAAGAAAATAAGCATGTTACTGAAGATGGTCAAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGAGATGTCGCTGAATTGAGAGACAAATCTCAAGATACGGTCAATCTTGTCGTCCATGAAGATAAAGGAAGTACTATCATGACTCGTAAGAAGAAACAAGGACGACATCTCGTTCAAAAAGTATGTTGCTCGTCCAAAAGAATGAATAAACATCGAAGACCGAAGAATCCAAGGAAACCTAAACTTGAGAAAGAAAGAAATCAAGATCCTTCTCAACATCGCCAATTGGTAACCTTAAAAGAATCATCCTTGAGAACTTTTTGTCCCATCAAGAAAGTGGAAGAAAATTTTGCAAGTTCATGTTATATCAACGTAGAAGAAGATGGTGGATCGAAGGAAATCAAGCATAGGACTTCTGTCTTTGATCGCATTGAGCCTTCAACTACTCGACCTTCGGTTTTCCAAAGAATGAGTATGGCTACAGCAGGAGAAGAATATCAAAGCTTGATGTCCACCATCACTCGACATTCAGCTTTCCAAAGACTAAACGTCTCTGCATCAAGAAAGAGTCGACTTTCAACATCTGTTTTTGATACCCTCAAAGTAACAAGCGATCGACATGAAAGAAAGATGGACAACTTGAAAGCTAACTTATTCGATGAAATAAACAATGACAATAAGCTTCACAGTACCACGCCGTCACGTATGAAGAGAAAAGTTTTTATGTCTTCTCCCTCTCAACCCTTTCTCCCTCTCCCATATGCCGTCGCCGTCATCTTTCAGATCGATATGCATTGTGAGGGTTGTGCTAAAAAAGTGAAACGAGCTGTGAAGCGTTTGGATGGAAAGATTTCTACCTCTTTCCTTCTGATTATGGCTGAAGAATCCTCCAACTCCATTTATGATTTCACTATCAAGGCATTAATTGCATTAAAGAAGGGTGCTCAATTGCTTAAATATGGTCATAAAGAAAAGTCAAAGTTCTTTCCATTAAGGCTTTCTAGTGTGAGCTTGGTTCCAATAATGCTTTTAATTAGTCTTGTAAAAGCTTTATATCCTTTAGATATTTTTAATAGTTATCTTCGTGGGGACAGTAGTGGCGACGTGAAAAATGATCTTCTGGCAACCTCATCGCAAGGAAATGTGTTGTGTCATAAATAA

Protein sequence

MPIIQEDQQANKPIQQIIKPTGQSKRTSSQHADHPRRSITHNRPIQKIIKPVGRSSKKINKPMSRCKRASNQQANPRDHEANRPIQEIINLASRSSKKPNKPAQEEQQGTGEERMAEVQKKISMLLKMVKEKDQEIASLRNQMESRDVAELRDKSQDTVNLVVHEDKGSTIMTRKKKQGRHLVQKVCCSSKRMNKHRRPKNPRKPKLEKERNQDPSQHRQLVTLKESSLRTFCPIKKVEENFASSCYINVEEDGGSKEIKHRTSVFDRIEPSTTRPSVFQRMSMATAGEEYQSLMSTITRHSAFQRLNVSASRKSRLSTSVFDTLKVTSDRHERKMDNLKANLFDEINNDNKLHSTTPSRMKRKVFMSSPSQPFLPLPYAVAVIFQIDMHCEGCAKKVKRAVKRLDGKISTSFLLIMAEESSNSIYDFTIKALIALKKGAQLLKYGHKEKSKFFPLRLSSVSLVPIMLLISLVKALYPLDIFNSYLRGDSSGDVKNDLLATSSQGNVLCHK

Homology

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BLAST of Spg027446 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-27
Identity = 98/226 (43.36%), Postives = 132/226 (58.41%), Query Frame = 0


Query: 151 LRDKSQDTVNLVVHEDKGSTIMTRKKKQGRHLVQKVCCSSKRMNKHRRPKNPRKPKLEKE 210
           + D+ ++ + +V H+ +  T   + K        K   S K+  K RR K   KPK  K 
Sbjct: 12  IEDEGEEWI-VVAHKKERQTSSVQTKSHFHQKHSKGNISHKK--KGRRNKKMWKPKPIKG 71

Query: 211 RNQDPSQHRQLVTLKESSLRTFCPIKKVEENFASSC-----------YINVEEDGGSKEI 270
           +++D  Q RQ +TL E   R+F      E    ++C           Y + EE   S EI
Sbjct: 72  KDEDCLQPRQSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEI 131

Query: 271 KHRTSVFDRIEPSTTRPSVFQRMSMATAGEEYQSLMSTITRHSAFQRLNVSASRKSRLST 330
           K RTSVFDRI+P TTR SVFQR+SMAT  EE Q   ST  R SAF+RL++S S+K R ST
Sbjct: 132 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 191

Query: 331 SVFDTLKVTSDRHERKMDNLKANLFDEINNDNKLHSTTPSRMKRKV 366
           S FD LK+T+D+ +R+M +LKA  F E N+D+K+HS  PSRMKRK+
Sbjct: 192 SAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKL 234

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BLAST of Spg027446 vs. NCBI nr
Match: KAA0050736.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 4.6e-27
Identity = 97/226 (42.92%), Postives = 134/226 (59.29%), Query Frame = 0


Query: 151 LRDKSQDTVNLVVHEDKGSTIMTRKKKQGRHLVQKVCCSSKRMNKHRRPKNPRKPKLEKE 210
           + D+ ++ + +V H+ +  T   + K        K   S K+  K RR K   KPK  KE
Sbjct: 263 IEDEGEEWI-VVAHKKERRTSSVQTKSHFHQKHSKGNISHKK--KGRRNKKMWKPKPIKE 322

Query: 211 RNQDPSQHRQLVTLKESSLRTFCPIKKVEENFASSC-----------YINVEEDGGSKEI 270
           +++   Q R+ +TL E   R+F      E    ++C           Y + EE   S EI
Sbjct: 323 KDEKFLQPRRSITLAEFFPRSFLEDHSEEILEVTACHTTSIVEVDNNYDSYEEVDNSNEI 382

Query: 271 KHRTSVFDRIEPSTTRPSVFQRMSMATAGEEYQSLMSTITRHSAFQRLNVSASRKSRLST 330
           K RTSVFDRI+P TTR SVFQR+SMAT  EE Q  MST TR SAF+RL++S S+K R ST
Sbjct: 383 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPST 442

Query: 331 SVFDTLKVTSDRHERKMDNLKANLFDEINNDNKLHSTTPSRMKRKV 366
           S FD LK+T+D+ +R+M +LKA  F E N+D+K++S  PSR+KRK+
Sbjct: 443 SAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIYSRVPSRIKRKL 485

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BLAST of Spg027446 vs. NCBI nr
Match: TYK02186.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-26
Identity = 97/227 (42.73%), Postives = 131/227 (57.71%), Query Frame = 0


Query: 165 EDKGSTIMTRKKKQGRHLVQKVCC--------SSKRMNKHRRPKNPRKPKLEKERNQDPS 224
           +D+G   +TR+K++  + + K           S     K RR K   KPK  K +++D  
Sbjct: 261 DDEGWIAITRQKERKPNFIPKESLFHQKYAKGSISHKKKGRRNKKIWKPKPTKGKHEDFL 320

Query: 225 QHRQLVTLKESSLRTFCPIKKVEEN-----FASSC-----------YINVEEDGGSKEIK 284
           Q R  +TL E     F PI  +E+N       ++C           Y + EE   S EIK
Sbjct: 321 QTRWSITLTE-----FLPISFLEDNPEEILEVTACNAASIVKVGKNYGSSEEVDNSNEIK 380

Query: 285 HRTSVFDRIEPSTTRPSVFQRMSMATAGEEYQSLMSTITRHSAFQRLNVSASRKSRLSTS 344
              SVFD I+PSTTR SVFQR+SMAT  EE Q   ST T+ SAF+RL +SAS+K + STS
Sbjct: 381 KMNSVFDHIKPSTTRSSVFQRLSMATKEEETQCPTSTYTQTSAFKRLGISASKKDQPSTS 440

Query: 345 VFDTLKVTSDRHERKMDNLKANLFDEINNDNKLHSTTPSRMKRKVFM 368
            FD LK+T+D+ + KM +LKA LF E NNDN++HS  PSRM+R +F+
Sbjct: 441 AFDHLKMTNDQQQGKMKSLKAKLFHEENNDNEIHSHVPSRMERNLFV 482

[Close]

BLAST of Spg027446 vs. NCBI nr
Match: TYK00108.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-26
Identity = 96/228 (42.11%), Postives = 133/228 (58.33%), Query Frame = 0


Query: 151 LRDKSQDTVNLVVHEDKGSTIMTRKKKQGRHLVQKVCCSSKRMNKHRRPKNPRKPKLEKE 210
           + D+ ++ + +V H+ +  T   + K        K   S K+  K RR K   K K  K 
Sbjct: 12  IEDEGKEWI-VVAHKKERQTSSVQTKSHFHQKHSKGNISHKK--KGRRNKKMLKSKPIKG 71

Query: 211 RNQDPSQHRQLVTLKESSLRTFCPIKKVEENFASSC-----------YINVEEDGGSKEI 270
           +++D  Q RQ +TL E   R+F      E    ++C           Y + EE   S EI
Sbjct: 72  KDEDFLQPRQSITLAEFFPRSFLEDHLEEILEVTACHTTSFVEFDKNYDSYEEVDNSNEI 131

Query: 271 KHRTSVFDRIEPSTTRPSVFQRMSMATAGEEYQSLMSTITRHSAFQRLNVSASRKSRLST 330
           K RTSVFDRI+P TTR SVFQR+SMAT  E+ Q   ST TR SAF+RL++S S+K R ST
Sbjct: 132 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTCTRTSAFKRLSISTSKKDRPST 191

Query: 331 SVFDTLKVTSDRHERKMDNLKANLFDEINNDNKLHSTTPSRMKRKVFM 368
           S FD +K+ +D+ +R+M +LKA  F E N+D+K+HS  PSRMKRK+F+
Sbjct: 192 SAFDRVKMINDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLFV 236

[Close]

BLAST of Spg027446 vs. NCBI nr
Match: KAA0052018.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 2.3e-26
Identity = 97/224 (43.30%), Postives = 129/224 (57.59%), Query Frame = 0


Query: 153 DKSQDTVNLVVHEDKGSTIMTRKKKQGRHLVQKVCCSSKRMNKHRRPKNPRKPKLEKERN 212
           D+ ++ ++ VVH+ +  T   +          K   S K+  K RR K   KPK  K ++
Sbjct: 368 DEGEEWID-VVHKKERQTSSVQTNSHFHQKHSKGNISHKK--KGRRNKKMWKPKPIKGKD 427

Query: 213 QDPSQHRQLVTLKESSLRTFCPIKKVEENFASSC-----------YINVEEDGGSKEIKH 272
           +D  Q RQ +TL E   R+F      E    ++C           Y + EE   S EIK 
Sbjct: 428 EDFLQPRQSITLAEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQ 487

Query: 273 RTSVFDRIEPSTTRPSVFQRMSMATAGEEYQSLMSTITRHSAFQRLNVSASRKSRLSTSV 332
           RTSVFDRI+P TTR SVFQR+SMAT  EE Q   ST  R SAF+RL++S S+K R STS 
Sbjct: 488 RTSVFDRIKPLTTRSSVFQRLSMATKKEENQCPTSTYARTSAFKRLSISTSKKHRPSTSA 547

Query: 333 FDTLKVTSDRHERKMDNLKANLFDEINNDNKLHSTTPSRMKRKV 366
           FD LK+T+D+ +R+M  LKA  F E N+D+K+HS  PS MKRK+
Sbjct: 548 FDRLKMTNDQQQREMKTLKAKPFHEENDDDKIHSRVPSHMKRKL 588

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BLAST of Spg027446 vs. ExPASy Swiss-Prot
Match: Q9SJL2 (Heavy metal-associated isoprenylated plant protein 5 OS=Arabidopsis thaliana OX=3702 GN=HIPP05 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 9.8e-04
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 0


Query: 382 AVIFQIDMHCEGCAKKVKRAVKRLDG 408
           A ++++DMHCEGCAKK+KR VK  DG
Sbjct: 51  AFVYKVDMHCEGCAKKIKRMVKHFDG 76

[Close]

BLAST of Spg027446 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.9e-28
Identity = 98/226 (43.36%), Postives = 132/226 (58.41%), Query Frame = 0


Query: 151 LRDKSQDTVNLVVHEDKGSTIMTRKKKQGRHLVQKVCCSSKRMNKHRRPKNPRKPKLEKE 210
           + D+ ++ + +V H+ +  T   + K        K   S K+  K RR K   KPK  K 
Sbjct: 12  IEDEGEEWI-VVAHKKERQTSSVQTKSHFHQKHSKGNISHKK--KGRRNKKMWKPKPIKG 71

Query: 211 RNQDPSQHRQLVTLKESSLRTFCPIKKVEENFASSC-----------YINVEEDGGSKEI 270
           +++D  Q RQ +TL E   R+F      E    ++C           Y + EE   S EI
Sbjct: 72  KDEDCLQPRQSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEI 131

Query: 271 KHRTSVFDRIEPSTTRPSVFQRMSMATAGEEYQSLMSTITRHSAFQRLNVSASRKSRLST 330
           K RTSVFDRI+P TTR SVFQR+SMAT  EE Q   ST  R SAF+RL++S S+K R ST
Sbjct: 132 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 191

Query: 331 SVFDTLKVTSDRHERKMDNLKANLFDEINNDNKLHSTTPSRMKRKV 366
           S FD LK+T+D+ +R+M +LKA  F E N+D+K+HS  PSRMKRK+
Sbjct: 192 SAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKL 234

[Close]

BLAST of Spg027446 vs. ExPASy TrEMBL
Match: A0A5A7U974 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00280 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.3e-27
Identity = 97/226 (42.92%), Postives = 134/226 (59.29%), Query Frame = 0


Query: 151 LRDKSQDTVNLVVHEDKGSTIMTRKKKQGRHLVQKVCCSSKRMNKHRRPKNPRKPKLEKE 210
           + D+ ++ + +V H+ +  T   + K        K   S K+  K RR K   KPK  KE
Sbjct: 263 IEDEGEEWI-VVAHKKERRTSSVQTKSHFHQKHSKGNISHKK--KGRRNKKMWKPKPIKE 322

Query: 211 RNQDPSQHRQLVTLKESSLRTFCPIKKVEENFASSC-----------YINVEEDGGSKEI 270
           +++   Q R+ +TL E   R+F      E    ++C           Y + EE   S EI
Sbjct: 323 KDEKFLQPRRSITLAEFFPRSFLEDHSEEILEVTACHTTSIVEVDNNYDSYEEVDNSNEI 382

Query: 271 KHRTSVFDRIEPSTTRPSVFQRMSMATAGEEYQSLMSTITRHSAFQRLNVSASRKSRLST 330
           K RTSVFDRI+P TTR SVFQR+SMAT  EE Q  MST TR SAF+RL++S S+K R ST
Sbjct: 383 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPST 442

Query: 331 SVFDTLKVTSDRHERKMDNLKANLFDEINNDNKLHSTTPSRMKRKV 366
           S FD LK+T+D+ +R+M +LKA  F E N+D+K++S  PSR+KRK+
Sbjct: 443 SAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIYSRVPSRIKRKL 485

[Close]

BLAST of Spg027446 vs. ExPASy TrEMBL
Match: A0A5D3BLW3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00640 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.6e-27
Identity = 96/228 (42.11%), Postives = 133/228 (58.33%), Query Frame = 0


Query: 151 LRDKSQDTVNLVVHEDKGSTIMTRKKKQGRHLVQKVCCSSKRMNKHRRPKNPRKPKLEKE 210
           + D+ ++ + +V H+ +  T   + K        K   S K+  K RR K   K K  K 
Sbjct: 12  IEDEGKEWI-VVAHKKERQTSSVQTKSHFHQKHSKGNISHKK--KGRRNKKMLKSKPIKG 71

Query: 211 RNQDPSQHRQLVTLKESSLRTFCPIKKVEENFASSC-----------YINVEEDGGSKEI 270
           +++D  Q RQ +TL E   R+F      E    ++C           Y + EE   S EI
Sbjct: 72  KDEDFLQPRQSITLAEFFPRSFLEDHLEEILEVTACHTTSFVEFDKNYDSYEEVDNSNEI 131

Query: 271 KHRTSVFDRIEPSTTRPSVFQRMSMATAGEEYQSLMSTITRHSAFQRLNVSASRKSRLST 330
           K RTSVFDRI+P TTR SVFQR+SMAT  E+ Q   ST TR SAF+RL++S S+K R ST
Sbjct: 132 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTCTRTSAFKRLSISTSKKDRPST 191

Query: 331 SVFDTLKVTSDRHERKMDNLKANLFDEINNDNKLHSTTPSRMKRKVFM 368
           S FD +K+ +D+ +R+M +LKA  F E N+D+K+HS  PSRMKRK+F+
Sbjct: 192 SAFDRVKMINDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLFV 236

[Close]

BLAST of Spg027446 vs. ExPASy TrEMBL
Match: A0A5D3BVC5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00860 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.6e-27
Identity = 97/227 (42.73%), Postives = 131/227 (57.71%), Query Frame = 0


Query: 165 EDKGSTIMTRKKKQGRHLVQKVCC--------SSKRMNKHRRPKNPRKPKLEKERNQDPS 224
           +D+G   +TR+K++  + + K           S     K RR K   KPK  K +++D  
Sbjct: 261 DDEGWIAITRQKERKPNFIPKESLFHQKYAKGSISHKKKGRRNKKIWKPKPTKGKHEDFL 320

Query: 225 QHRQLVTLKESSLRTFCPIKKVEEN-----FASSC-----------YINVEEDGGSKEIK 284
           Q R  +TL E     F PI  +E+N       ++C           Y + EE   S EIK
Sbjct: 321 QTRWSITLTE-----FLPISFLEDNPEEILEVTACNAASIVKVGKNYGSSEEVDNSNEIK 380

Query: 285 HRTSVFDRIEPSTTRPSVFQRMSMATAGEEYQSLMSTITRHSAFQRLNVSASRKSRLSTS 344
              SVFD I+PSTTR SVFQR+SMAT  EE Q   ST T+ SAF+RL +SAS+K + STS
Sbjct: 381 KMNSVFDHIKPSTTRSSVFQRLSMATKEEETQCPTSTYTQTSAFKRLGISASKKDQPSTS 440

Query: 345 VFDTLKVTSDRHERKMDNLKANLFDEINNDNKLHSTTPSRMKRKVFM 368
            FD LK+T+D+ + KM +LKA LF E NNDN++HS  PSRM+R +F+
Sbjct: 441 AFDHLKMTNDQQQGKMKSLKAKLFHEENNDNEIHSHVPSRMERNLFV 482

[Close]

BLAST of Spg027446 vs. ExPASy TrEMBL
Match: A0A5D3DQU7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00080 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-26
Identity = 95/226 (42.04%), Postives = 130/226 (57.52%), Query Frame = 0


Query: 151 LRDKSQDTVNLVVHEDKGSTIMTRKKKQGRHLVQKVCCSSKRMNKHRRPKNPRKPKLEKE 210
           + D+ ++ + +V H+ +  T   + K        K   S K+  K  R K   KPK  K 
Sbjct: 123 IEDEGEEWI-VVAHKKERQTSFVQMKSHFHQKHSKGNISHKK--KGIRNKKMWKPKPIKG 182

Query: 211 RNQDPSQHRQLVTLKESSLRTFCPIKKVEENFASSC-----------YINVEEDGGSKEI 270
           +++D  Q RQ +TL E  LR+F      E    ++C           Y + EE   S EI
Sbjct: 183 KDEDFLQPRQSITLTEFLLRSFLEDHPEEVLEVTACHTTSIIEVDNNYDSYEEVDNSNEI 242

Query: 271 KHRTSVFDRIEPSTTRPSVFQRMSMATAGEEYQSLMSTITRHSAFQRLNVSASRKSRLST 330
           K RTS+FD I+P TTR SVFQR+SMAT  EE Q   ST  R SAF+RL++S S+K R ST
Sbjct: 243 KQRTSIFDHIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 302

Query: 331 SVFDTLKVTSDRHERKMDNLKANLFDEINNDNKLHSTTPSRMKRKV 366
           S FD LK+T+D+ +R+M +LKA  F E N+D+K+HS  PS MKRK+
Sbjct: 303 SAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSHMKRKL 345

[Close]

BLAST of Spg027446 vs. TAIR 10
Match: AT5G42140.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 48.1 bits (113), Expect = 2.4e-05
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 428 FTIKALIALKKGAQLLKYGHKEKSKFFPLRLSS--VSLVPI------MLLISLVKALYP- 487
           + ++ALIALKKGAQLLKYG K K KF P RLS+   SL+ I       L ++ V  + P 
Sbjct: 8   YVLQALIALKKGAQLLKYGRKGKPKFCPFRLSNDETSLIWISNGGEKRLKLATVSKIVPG 67

Query: 488 --LDIFNSYLRGD 490
               +F  YLR D
Sbjct: 68  QRTAVFQRYLRPD 80

[Close]

BLAST of Spg027446 vs. TAIR 10
Match: AT2G36950.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 7.0e-05
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 0


Query: 382 AVIFQIDMHCEGCAKKVKRAVKRLDG 408
           A ++++DMHCEGCAKK+KR VK  DG
Sbjct: 51  AFVYKVDMHCEGCAKKIKRMVKHFDG 76

[Close]

BLAST of Spg027446 vs. TAIR 10
Match: AT1G76950.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 46.2 bits (108), Expect = 9.1e-05
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 431 KALIALKKGAQLLKYGHKEKSKFFPLRLSS 461
           +ALI LKKG QLLKYG K K KF+P RLSS
Sbjct: 16  QALITLKKGTQLLKYGRKGKPKFYPFRLSS 45

The following BLAST results are available for this feature:

BLAST of Spg027446 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044978.1	1.2e-27	43.36	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0050736.1	4.6e-27	42.92	retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotranspos...	[more]
TYK02186.1	1.8e-26	42.73	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK00108.1	1.8e-26	42.11	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0052018.1	2.3e-26	43.30	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg027446 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJL2	9.8e-04	65.38	Heavy metal-associated isoprenylated plant protein 5 OS=Arabidopsis thaliana OX=...	[more]

BLAST of Spg027446 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQ06	5.9e-28	43.36	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7U974	2.3e-27	42.92	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3BLW3	8.6e-27	42.11	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3BVC5	8.6e-27	42.73	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3DQU7	1.1e-26	42.04	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Spg027446 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42140.1	2.4e-05	46.58	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT2G36950.1	7.0e-05	65.38	Heavy metal transport/detoxification superfamily protein	[more]
AT1G76950.1	9.1e-05	73.33	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 322..342
None	No IPR available	COILS	Coil	Coil	coord: 115..142
None	No IPR available	GENE3D	3.30.70.100		coord: 380..435 e-value: 1.2E-6 score: 30.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..79
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 385..407 e-value: 3.7E-6 score: 27.3
IPR006121	Heavy metal-associated domain, HMA	CDD	cd00371	HMA	coord: 385..407 e-value: 6.23098E-5 score: 39.1261
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 383..413

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg027446.1	Spg027446.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding