Spg027335 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg027335
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold7: 41418922 .. 41429503 (-)
RNA-Seq ExpressionSpg027335
SyntenySpg027335
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCATCCCCTTATCTAGCCGATGTGGGACTTTGGGCGCACTCCCAACAATCCTCCCCTCGAACAAAGTACCACCGAGCCTCCCCTCAAATAGTCATCTATCCGTCCAACTCTCTAGGCTTCACCGCCGCTTTACCGAGAGTTTGCTCTTATCCAAGACAACTCCTTTCTCCGGAGTACACCCGCTTGCCCAGAGCTCAACCACGGATCTCCCCATGACTACTTCAAGGCTCACAACTTCTTTGTTCTGCACCCGAGGATTCTACCCGACACGGCTACGCCTGGGGCATGGCTCTGATACCACTTGTAAGATTGGAATTCCCAATTCCGTTACAGCGGAAGCAATTGGACCGAATCGTATTTTAATTTCGTTTGGCAAAATACCAATACATTGGCAATTTTTCAGAATTCATAATTCTACAATTTAAGGTTAAGCAAACTTACTATCGTGGACGACTCAGAATTCAAGGATGCTTCTGGATTGTGCAAGGACCAAATGTGTGAATCTACCATTTGAACACCACCACAAGGGCTTCCCCGCTATCCTCTGAGATTGGGAACTTGGTTGTGGGACCACGATCTTGAGAGGGAATATTTTACAGAGAAGAACTTCTCTGTGTTTCTTGTTGAGAGAGAATTGAGAGAGGGAGAGTTCAGAGAGATTTCTTCTGTAGAATGAGTGTGAAGAATATGACCCCTCATGCATGTGTTATTCATGTGAGGGATGAGATCTAATCTCAACCGTCCACCTCATCATAAGGTTATTAATTAATAAATTAATTAAAATTAATTAACTATATGCTAACCAATTAATCATATTAATTAATTAAGCATATTTACATTTAAATCATATTTAAATGCAATGCCCTCACATAATATATAGTTTTAATTAAACTTAATTAAATCACATTTAATTAAATTAATTAAACCACACAATTAATTAATTCTTCGATCAATTAAACATCACATATATTTAATTAATCAAACATTCAAATCATATTCAAATGTGCATCTCTCTTATAACCTATAGTTTTAATATAAATCATATTCACATTAAAATTAATCTATAGTTTTAATTTAATTAAATCACATTTAACTAAATTAAATTGAACAATTAATTAATTCAAAATTAATTAATTTTATAATTAATTAAACATCTACCATATTTAATTAATTACATATTAGGATTATATTCTAATATATATATCTCATATGATATAGTTTAATTAAATCACATTTAATTAAACTTTAATTAACTAATTCATAATTAATTAATTAATTTACTAATTAAATATCATATACTTAATTAGCTATATATTTGAACTCTTTCAAATATATTATTCTCTCAATTAATAAAGTTTAATCTCAAATTAAACTTTATATTATAATGTATCACAGTACATTATATTAATTGTATCTCATACAATTAATTTGATTCCCAAGATGAATTTGAACTATTCAAATTCTTTCAAGATAAATTGTTCCCAATTACTCTTTACGAGTTAGCAGGGAGACCTAATGGATCTACAGATCAGAAGCTCCAATGATATGAGGTTAACTGACTAAACTCATTAATCAAGTTAACCAATATTCATTAACTGTGGGTCACTCCACTAAAGACCCACAGTTGCACTCTTCTCACTGTAGAATATTTCTGTGTCCACGAATATTGACCAATAACGGTAAGTCAATCCTTCACGAGTGTTCGTAACTACAGCTGGGTCAAATTACTGTTTTACCCCTGAGTTACCTCTGGCTCCTTAGGGCCCGTTTGGTAACGTTCTCGTTTCTTGTTTCCGTTTCTTTATTTTTAATAAAGAAAAATAGAATTTCATGACCCTAACACGTATACATTCAATAATAATAAACCTATATTCTTATTTATGTTTGGAAAAAATTGGAAACAAGAACAAAAAAGGAGAAACTAGTTTTAGTTGTTCCCAAAAGTTCTATACAAATTTTGGGAGTGTTTCTAAAAAATGAGAAACAAGAAACATACATAGTTATTAAATGCTTAGATTTCTTAATAAAATTGGAAACAAGAAACAAGAAACGAGAACGTTACCAAACGGGCCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTATGGTCCAACCAATAAACAGAAAGTCCCTCTCGGGCCAGTGAGAGGGCGGGATCCCTTTGTTCAAGACCCGGAGTCACCACTTAAGGGAACACTCATCTACTTCTCCTAGAAGTGGGAAGGAGTGAATTCCATCTTGTGTTGTCATGTCCCCAGCCCCCCACTCGGTCTTGTCCCCAAGAAGGTAGGCTTATTGAGTCGGCGTGCAGGCCACTCTCACCCGTACTAATCAAAGGACAATCTCTCGTGAGAAGGAGTTCATGACACACTCAGGATTAAGACTGAGTTACCTAGGTCATCCTATTGAAATAGGAGCCTAACTAGTTAACGGTGTTACATCTAGTGGTTTACTATTTCGTGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCCCGCTCGCATGTCTCCTACATGGACGCCTTGGATCAATACGTCTGTATCGAATACAAATCGGGTCGTATCACATAGTGTTACCAGGATAAGGTACCCAACCTTATCCTTGTACTATAGACCTTTTAGGTTGTTACTTGAACACTGATCCCCGTATGTCCCCACATACTAGTTCAAGTTACATATCAACAACCTTGGATCTTAGTTTATTGGATTTGGGCTATATTGTGCAATTTTAGACTTAAAATGACAATAACATTTTATTGCATAAACCTCAATAACACTTTATTGATACAAGTGTATAATTCGTTAACATTCACTATCTACGAGTTTTAGGACATAAAACCCAACAAACTCCCACTTGTACTAAAAAACTAGTTTAGTGGGATGTACAATAATCTATCCCGGCAGTGGGTGTATAAATACATAAAATGTATTTACAATGTATAAATACAATAAACTAGGGCATCACTATACCCATTACATAATGGTATCACTATACCCATTACACTTCTCCCACTTGCCCTAGATTACATCTTTGTACATAACTCGTAGACCTAGACCATCTAGATGACCCTCATACACTTTAGCCGAGAGGGCCTTCGTGAATGAATCAACAATATATCCTTTTAGATTCAATGTGCATGCTTGTCTTGAAATATGCAAGTTCATATTTGGAACACCTTCCAAATTAGGCTTGAACTTCCTAAGTCACACAGTCTCTATCGCTGCTTCATAAGCAACTGCTTGTCGGCCTATATGATCGAGACTGCAGATATGTCATACTATAGCTCCTCCATTAAGGGTGAACACAGACAGTGTGAACATCTGTGTGTTAGTGTATCCAGTAAGGATCCAATCCTTAGTGCCATACACGAGCATATAGATCCTTGTTCTCCAAAGATACTGGAGGATTTACTTAACGGCTCACCAGAGATCAAATCCTGGATTTGATTGATATTTACTGACAATCCCTACTTCATAGGGCTTATGTCTCATGTCCTCAATTTCTTGAGGTAGCTAAGGACACTGTTCCTTAGACTAATGAATTCCATGCTTGAAAGGTAATGAACCTTTCTTGGAATTCTACATCTTATATCTAACTAACATCTTGTAGACATAAGACACATGAGACAAGGCTAGCTCAGCTTCTCCCAAACTTTCATTTGAAATGAGCTGCTAGCCTCTTTTAATGTCAGTAAGATAACCTACATCATTCTCAATGATTAGGATATCAATCATATACAACACTAAGTGAGCTACTGAATCATTGATGATTACTTGTAAACACAAGACTCATCAATGTTCTGATTAAAGCCAAAAAATTTGATCACTGTATCAAATCTTAAATTCCAAGATCGAAATACTTAGGTCAATCCATGAATGGACCACTTAAGCTTGCAAACCCTTTTGCTTTTGATCTTGCTCAATGGACCCTTCTGGTTGAGACCTTAAATGTCTCGTTTCCTCTTGTAAATCCACTTGTAACTAATAGGTGTTACCCCATCAAGCAAATCTACAAGATCCCAGATGGAATTGAAGCGCAAAGACTTCATTTCCAGATTCATGACTTTAATCCTCTGATCGTTGTCAACATCATTCATTTTCTTTCTAAAAGACAATGAATCCTCTATGTTATCATCAAGTATGACGACATAGGCTTGAACCAAGCCCATGTAATGTTCAGGTTATAAAACAACCCTCCCACTACATCAAGGCACTCTCAACTATTGAGATGGGTGAACTGACCAGATGCTTTGGTCCATCAACAACTCTTGATGAACAGCCAGCCTCATCAACAACTCTTGTTGATGTTCCTGTAGCTTCATTAGCTTTCCACTTAAATCGACCTTACTTTGTGGCAAATGATTTCCCATGTGGTCTTCTTCTTAGAATGTAGCATTTGTCGATACAAATTCTTTATTCTCTTGTGGATTGAAGAAGTATCCATTACTCGTTTCCTTTGGGGTTGCCTACTGCAACCAATACTGCATGACCCCAAAACGAGCTAGGCAATTGAGCATAGCTCAACATGGATCGAACCATATTCAATAGGGTTCTATTTCTCCTAAATGAGATTTAGGGTGTGATCCCATGTACTATCAAATAGTCCTAGAATCTCAAATCCCTATACTCAACACTTTGATCAGATCAAAATGTTTTTATCATCTCACCTAACAAGTTTCCAACTTCAGTCCTAAGCCCCTTCGAATATCTCAAGAGCTTCAAACTTAAGTTGCATTAGGTAAAGATACTCATACCTTTGAATAACCATCCAAAAGAGATGAATTATTCATGCCCTCCCACTACTTTAACATGTTGGACTACAATGATCCAAATGTACAAGTTTAAGGGCTCTTTGGCTCTTTGGCTCTTTTCCAGTAAAAGACCTATTAGTCACATTGCCCTTAAGGCATGACTTACAAGATAGTAGAGAGTCATCTTCTAACTCGCTTAGAAGTCTACTCTTGACCAATCTCCCAATCAAATTGAGATTAATTTGGCCTAATCTTAAGTGCCAAAGAAAAGTATGTTCCTTTAGGAGAAATCCTTTGCCTCTATTGCTTTGAGTATAAGCAGGCTTAAACAACTCAGTGCTTATAACTACTTTACTCTCGATTAATCTTAAAACACAAGGTTATTTTCCAATCTGGCTGAACAATTATCAACTCCCTTTGTTGAAATAAAATTGCGTTAGCAGAAAAAGGTAAAGAGCAACATTGTTCTAGCATTAAAGATACAGAAATCTAATTTCTGTTCATCTTAGGAAATACATACACATTATCTAATAATATGTATTTTTCTCCCACTGAGAAAAATAACTTAATGTTCCCCACTGCTACAGCCAAGATAACCTCTCTAGTTCTCAACTTGAGAGTTATTACACAAGCAGCAAGCTGCAGTCAGAAACTCATGCCTTTAAAAGAAGAACACACATGATTTGTAACCCCTGAATCAAGTATTCAGGGAGAATCACTATTCTTTACTAATCACGTTTTCAAGACAAGTAAATGAAAATTACGGTCTTGAACAAGTTCTCTTTTGCTAAGCAGGGTCCTATGTCATATTCACCAAGAACAATTCTTAATGAATTAGACATATGGGGCATGAGGACATTCCTCAGTTGAGACTAACCCTAGACTCATTTACCACAATCTGTCGTTTAAGCTTGTTGTATTACAGTTATTTATAACATAGCGAAAGACAATGCACATTAAAAAATTATATAATTGCTGAAGTAACAAAGTACTTGTATTATTAATCGCACTAACCCATTACAGATAATCCAATCAAATTCTGCAAAAACAAACAAGCAATCAAAGAAACCCTATAAAACTATTGATTTAGTTTTTGCAACGATACTTCAAAGGTTTAGAGCAATAGCCACCGAAGGGTGGTCAGCTACTCCTCCTCTGAATTGAGACAATCTCAACCAAAATCTAACACCAGAATAACTCATATTCCGTTAGCGTTTAGTTACCGTTGTTTGGTCAAGGATTTGTTAACACATTTAACTCATCCCCGTAAGTGTAACCGTCCCACTTTCAGATCCCAGAGGTACGGACCAACAGGCTACCATAAGAAAAGACAACTGTTGGTAATTAACCTAAGTGACTCTATCCATTTCTGGAGTTCGCGGTGTTCTGAAACCTATGATCAGGCCCTCCGAAGGGATGGTCGCTCCAGGACGACACGCAGGCGGATCATAAGAATCTCACGGTGCGACCTAGGGGTGGAGACCGTAGGATACGTTGACACGCATCCTGCTCCCACTTACTATAGACATTCTCCCCATTCACCTTGGTATTGACCCATGAAAACACTTTCCTAAGGGAGGCCGCGCCCAGGGCGACACGAAGCCGAGCATGGATCTCACGGTGTGAACACAGGGGGACGTGAGAGTAAAAACTCGATATGAAAATCTTGTTTTTATATTTTTCCTCCCACTGAAATGTCCTATCATATTTAGGGTTATTAAACTTAGATAAATCCGGCTAAGTCAATCTATCTAAGTCTATGCCTATTATAACTCTTATAATAAGGTCTTTACACTAATGTCTAGGTCAATTAAACCCTTTTAATTACCTAGTGACATTGCATGCTAATAGGACAATGGTTAATTCAACTCAGGTACCGGGTCAGTTCCCAGGTAGGAGAAAACTCCAGCCTAGACAGAACCTCATCGGGAGAGTTCCCTTATAACCAAAATCCTATTTGTCCTACTTACCATATTTTAAATCTATTAAAATACTAAGCAAGACATAATTTCTAATCCTATTAGAAATTGTGATCTTAGGTCTAATTAATTTTAAACAATTTTAAAACTAATTCATTTTTCCTAAGATCCTATGTTTGCATGCAATTCTTTGTTATAGGTTAATAAATTTCTAATCATTAATATTATAACTATTATAAATTTTAATGAATTAGACCTATAACATGCTACTATGGTGAATAAATCAACAATCACATTCGAATTAATTTATTAATCATACAATAGCAAACATGACATTAAATAATATAACAATTATATTAAACTATGGTAATGTCATGCTCAATGCAATTTTAATTTTCTTTAATTAATTTAACTCTTAAAATAATTATATAAGAAAATCCATTTTCATACATTAATATAACCCTTTATATTAATAGCTCATGAAAAATACATTAACAGAAAAAGGGAAGATTGTGCAAACAATCTATTATGCAAGCAAGACACTTAACGAAGCACAGTTGAACTATACATTAACAGAAAAAAAACTACTTGCAGTAGATTTTGCGTTTGACAAGTTTAGATCCTACTTAGTAGGAACTAAAGTTATAGTTCATACTTATCATTCAACCCTTAAACACTTGTTATCCAAGAAAGATGCTAAACCCCGACTAATCCACTGGATTTTACTCTTGCAGGAATTTGATATTGAAATTCAGGACATAAAAGGGACTGAAAATCAAGGGGCAGATCATCTAACAAGGCTTGGGGAAGAGGCGCAGGTGGAGAAGAGGCTGGACGTTCGAGAGTCATTTGCAGATGAATAGATATTGGCAGTAAGGGCAATTGAGATTCCATGGTTTGCAGAGTACGTGAACTACTTAGCCAGTGGACTGAAGCCTCCAAAAGCCACAACTCAACAACTGAAAACGTTTCTGAAAGATGTAAAGGAATATTATTGGGATGAGCCATACCTATACAAACTAGGCGTAGATTAAATACTCAGACGATGTGTAACAGAGGAGGAAGTACCATTCATTTTCGAAGCCTGCCACTCAACTCCATATGGATGGCACTTCGCAGGACTAAAAACTACAGCCAAAGTCCTCCAATCAGGGTACTTTTGGTCGAGTCTCTTCAAGCTTGCACATCTATTTACAAAGAACTGCGATTAGTGCCAGAGAACAGGGAATTTAACAGTTAGGAATGAAATGCCACTAAACTTCATACTTGAAGTGGAAATCTTTGATGCATGGGGAATAGATTTCATTGGCCCATTCCCTCCGTCCTTTGGAAATTTCTATATTCTACTTGCAGTTGATTATGTATCAAAGTGGATCGAGGCCATAGTCACATCAACCAATGATGCGAAGGTAGTAAAGAAATTCTTTATGAAGAAATTTTTACAAGATACGAGACTCCTCGATTTATCATAAGCGATGAAGGTACGCATTTTTTTAATAAGATGATAGCAAATCTGTTTTCCAAATATAACATCAGGCATAGGGTTGCAACTGCTTACCATCCTCAGATGAATGGACAAGCAGAGCTCTCTAACTGAGAGATAAAGACAATTTTGGAGAAAACATTAGACCCTTCTCTGAAGGATTGGCCGTTACGTCTTGATGAGGCACTATAGGCGCATAGAACAACATATAAGGCACCCTTGGGAATGTCTCTGTACCAGATTGTATTTGCAAAGACTTGTCATCTACCGCTACAACTGGAACACAAGGCATATTGGGCGTTGAAGAAATTCAACTTCAATATAGACAAAGCTGGAGTTAAAAGAAAATTGCAGCTGAATGAATTAGAAAAGCTCCGTCATTTCTTGTAAACCCGAGACTTTCCCTTAGATAACTTTCTCTTATCATCTATTGTGGCTTCATGGTTGAATCTAAGTTGTTGGAAATTATACATTTAAAAAGAAAGGAAAGAAAGGAATTAAACAAGTGAAGAAAAGAAAAGAAAAGAAAAGGAAAAGGAAAAGGGAAAAAGGAAAAAAAAAAAAAAAAGAAAAGGAAAGAAAGAAGATGGGAAATGACAGCAAGACACCCACCACCGACTACACTTTTTATCAGCCCATTTCCATTTCATTTCTCATCTTTTTCCATCCACATCTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAACAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGATTTGATTTTCATGAAATTTAGTTCAGTTTCTAACAAATTTCATGAAGGAAGCTTGACCTAAATCGTATGAGAAGTGGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGAGTATTCAATTATCTACAACTTGCATGAAGAATTTGTGAGCCAAAAATGACTTGAAGTAGGTTTAAGTTCAGGAGGAAGATTAAGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGAGCAGTTCTGGGCAAATTGGTTGGGAATCTCGTTTTCATTTCTTTAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTTATGGGTATTTTATTAATTTTGGTTCAGTATTGAGGAAGTTATGAGTATTGGAAGTTAGGGTATAGAATTTGGAAAATCTGGAAAGTAGAATTGTGAATGTGATTCTTAATCAAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTGAGTGACAAAATGAATTTCGAAAATGTTCTTAAACGGTTGTTCATGATTATATGTTTTACCTGCTTTCCTATGAATGATACATGGTTTTTATGAACGGTTTCAAGCATGAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGTCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGCAAAGTATGGATTAGCAAGTACTTTTAAACGATTTCCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTATCGAAAGATAGCGATAAGCAGGCATGTTTTAATGTTTCCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTCGACGTTGAGTGTTCTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCCTACATCGTAGGGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGATTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATATTTTAGAAAGCCTTTTTCATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA

mRNA sequence

ATGATCATCCCCTTATCTAGCCGATGTGGGACTTTGGGCGCACTCCCAACAATCCTCCCCTCGAACAAAGTACCACCGAGCCTCCCCTCAAATAGTCATCTATCCGTCCAACTCTCTAGGCTTCACCGCCGCTTTACCGAGAGTTTGCTCTTATCCAAGACAACTCCTTTCTCCGGAGTACACCCGCTTGCCCAGAGCTCAACCACGGATCTCCCCATGACTACTTCAAGGCTCACAACTTCTTTGTTCTGCACCCGAGGATTCTACCCGACACGGCTACGCCTGGGGCATGGCTCTGATACCACTTGTAAGATTGGAATTCCCAATTCCGATACCCCCGCTCGCATGTCTCCTACATGGACGCCTTGGATCAATACGTCTGTATCGAATACAAATCGGGTCGTATCACATAGTGTTACCAGGATAAGTTCGCGGTGTTCTGAAACCTATGATCAGGCCCTCCGAAGGGATGGTCGCTCCAGGACGACACGCAGGCGGATCATAAGAATCTCACGGTGCGACCTAGGGGTGGAGACCGTAGGATACGTTGACACGCATCCTGCTCCCACTTACTATAGACATTCTCCCCATTCACCTTGGTACCGGGTCAGTTCCCAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTCGACGTTGAGTGTTCTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCCTACATCGTAGGGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA

Coding sequence (CDS)

ATGATCATCCCCTTATCTAGCCGATGTGGGACTTTGGGCGCACTCCCAACAATCCTCCCCTCGAACAAAGTACCACCGAGCCTCCCCTCAAATAGTCATCTATCCGTCCAACTCTCTAGGCTTCACCGCCGCTTTACCGAGAGTTTGCTCTTATCCAAGACAACTCCTTTCTCCGGAGTACACCCGCTTGCCCAGAGCTCAACCACGGATCTCCCCATGACTACTTCAAGGCTCACAACTTCTTTGTTCTGCACCCGAGGATTCTACCCGACACGGCTACGCCTGGGGCATGGCTCTGATACCACTTGTAAGATTGGAATTCCCAATTCCGATACCCCCGCTCGCATGTCTCCTACATGGACGCCTTGGATCAATACGTCTGTATCGAATACAAATCGGGTCGTATCACATAGTGTTACCAGGATAAGTTCGCGGTGTTCTGAAACCTATGATCAGGCCCTCCGAAGGGATGGTCGCTCCAGGACGACACGCAGGCGGATCATAAGAATCTCACGGTGCGACCTAGGGGTGGAGACCGTAGGATACGTTGACACGCATCCTGCTCCCACTTACTATAGACATTCTCCCCATTCACCTTGGTACCGGGTCAGTTCCCAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTCGACGTTGAGTGTTCTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCCTACATCGTAGGGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA

Protein sequence

MIIPLSSRCGTLGALPTILPSNKVPPSLPSNSHLSVQLSRLHRRFTESLLLSKTTPFSGVHPLAQSSTTDLPMTTSRLTTSLFCTRGFYPTRLRLGHGSDTTCKIGIPNSDTPARMSPTWTPWINTSVSNTNRVVSHSVTRISSRCSETYDQALRRDGRSRTTRRRIIRISRCDLGVETVGYVDTHPAPTYYRHSPHSPWYRVSSQGKAHAKPAIAGSEINLSTSGFLFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVL
Homology
[Close]
BLAST of Spg027335 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 8.1e-26
Identity = 74/129 (57.36%), Postives = 84/129 (65.12%), Query Frame = 0 

Query: 231 LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPL 290
           +S  E ++ PRGNR SLQT E+DKT              LSTLSVL DNDAVVSAG+APL
Sbjct: 74  ISNLENLEMPRGNRLSLQTEEIDKTV----------IFPLSTLSVLSDNDAVVSAGQAPL 133

Query: 291 RQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRTSSSTWV 350
           RQRRWEC  GP                +  S  LVEIELPVPD LPTSAESSR++SSTW+
Sbjct: 134 RQRRWECRTGPT-----------TSFFKMFSTFLVEIELPVPDILPTSAESSRSNSSTWL 181

Query: 351 ELYIESVHI 360
           ELY ESVH+
Sbjct: 194 ELYFESVHV 181

[Close]
BLAST of Spg027335 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 8.1e-26
Identity = 74/129 (57.36%), Postives = 84/129 (65.12%), Query Frame = 0 

Query: 231 LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPL 290
           +S  E ++ PRGNR SLQT E+DKT              LSTLSVL DNDAVVSAG+APL
Sbjct: 74  ISNLENLEMPRGNRLSLQTEEIDKTV----------IFPLSTLSVLSDNDAVVSAGQAPL 133

Query: 291 RQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRTSSSTWV 350
           RQRRWEC  GP                +  S  LVEIELPVPD LPTSAESSR++SSTW+
Sbjct: 134 RQRRWECRTGPT-----------TSFFKMFSTFLVEIELPVPDILPTSAESSRSNSSTWL 181

Query: 351 ELYIESVHI 360
           ELY ESVH+
Sbjct: 194 ELYFESVHV 181

[Close]
BLAST of Spg027335 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 5.3e-25
Identity = 74/117 (63.25%), Postives = 77/117 (65.81%), Query Frame = 0 

Query: 240 PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWA 299
           PRGNRSSLQTGELDKT             SLSTLSVLRDNDAVVSAG     +       
Sbjct: 520 PRGNRSSLQTGELDKTVR----------FSLSTLSVLRDNDAVVSAGGPHYDKDDGNAVR 579

Query: 300 GPLHRRASKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRTSS 347
            PLHRR SKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS ++S
Sbjct: 580 APLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIELSVPDTLPTSAESSESNS 626

[Close]
BLAST of Spg027335 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 5.3e-25
Identity = 74/117 (63.25%), Postives = 77/117 (65.81%), Query Frame = 0 

Query: 240 PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWA 299
           PRGNRSSLQTGELDKT             SLSTLSVLRDNDAVVSAG     +       
Sbjct: 106 PRGNRSSLQTGELDKTVR----------FSLSTLSVLRDNDAVVSAGGPHYDKDDGNAVR 165

Query: 300 GPLHRRASKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRTSS 347
            PLHRR SKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS ++S
Sbjct: 166 APLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIELSVPDTLPTSAESSESNS 212

[Close]
BLAST of Spg027335 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-17
Identity = 65/132 (49.24%), Postives = 70/132 (53.03%), Query Frame = 0 

Query: 228 LFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGR 287
           LFGL Y EG KRPRGNR+SLQTGELDKT             SLSTLSVLRDNDAV     
Sbjct: 19  LFGLGYPEGTKRPRGNRTSLQTGELDKTV----------IFSLSTLSVLRDNDAV----- 78

Query: 288 APLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRTSSS 347
                                                VEIELPVPDTLPTSAESS ++SS
Sbjct: 79  -------------------------------------VEIELPVPDTLPTSAESSGSNSS 98

Query: 348 TWVELYIESVHI 360
           TW+EL  E VH+
Sbjct: 139 TWLELNFEFVHV 98

[Close]
BLAST of Spg027335 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.9e-26
Identity = 74/129 (57.36%), Postives = 84/129 (65.12%), Query Frame = 0 

Query: 231 LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPL 290
           +S  E ++ PRGNR SLQT E+DKT              LSTLSVL DNDAVVSAG+APL
Sbjct: 74  ISNLENLEMPRGNRLSLQTEEIDKTV----------IFPLSTLSVLSDNDAVVSAGQAPL 133

Query: 291 RQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRTSSSTWV 350
           RQRRWEC  GP                +  S  LVEIELPVPD LPTSAESSR++SSTW+
Sbjct: 134 RQRRWECRTGPT-----------TSFFKMFSTFLVEIELPVPDILPTSAESSRSNSSTWL 181

Query: 351 ELYIESVHI 360
           ELY ESVH+
Sbjct: 194 ELYFESVHV 181

[Close]
BLAST of Spg027335 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.9e-26
Identity = 74/129 (57.36%), Postives = 84/129 (65.12%), Query Frame = 0 

Query: 231 LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPL 290
           +S  E ++ PRGNR SLQT E+DKT              LSTLSVL DNDAVVSAG+APL
Sbjct: 74  ISNLENLEMPRGNRLSLQTEEIDKTV----------IFPLSTLSVLSDNDAVVSAGQAPL 133

Query: 291 RQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRTSSSTWV 350
           RQRRWEC  GP                +  S  LVEIELPVPD LPTSAESSR++SSTW+
Sbjct: 134 RQRRWECRTGPT-----------TSFFKMFSTFLVEIELPVPDILPTSAESSRSNSSTWL 181

Query: 351 ELYIESVHI 360
           ELY ESVH+
Sbjct: 194 ELYFESVHV 181

[Close]
BLAST of Spg027335 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-25
Identity = 74/117 (63.25%), Postives = 77/117 (65.81%), Query Frame = 0 

Query: 240 PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWA 299
           PRGNRSSLQTGELDKT             SLSTLSVLRDNDAVVSAG     +       
Sbjct: 520 PRGNRSSLQTGELDKTVR----------FSLSTLSVLRDNDAVVSAGGPHYDKDDGNAVR 579

Query: 300 GPLHRRASKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRTSS 347
            PLHRR SKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS ++S
Sbjct: 580 APLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIELSVPDTLPTSAESSESNS 626

[Close]
BLAST of Spg027335 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-25
Identity = 74/117 (63.25%), Postives = 77/117 (65.81%), Query Frame = 0 

Query: 240 PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGRAPLRQRRWECWA 299
           PRGNRSSLQTGELDKT             SLSTLSVLRDNDAVVSAG     +       
Sbjct: 106 PRGNRSSLQTGELDKTVR----------FSLSTLSVLRDNDAVVSAGGPHYDKDDGNAVR 165

Query: 300 GPLHRRASKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRTSS 347
            PLHRR SKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS ++S
Sbjct: 166 APLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIELSVPDTLPTSAESSESNS 212

[Close]
BLAST of Spg027335 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.8e-18
Identity = 65/132 (49.24%), Postives = 70/132 (53.03%), Query Frame = 0 

Query: 228 LFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVSAGR 287
           LFGL Y EG KRPRGNR+SLQTGELDKT             SLSTLSVLRDNDAV     
Sbjct: 19  LFGLGYPEGTKRPRGNRTSLQTGELDKTV----------IFSLSTLSVLRDNDAV----- 78

Query: 288 APLRQRRWECWAGPLHRRASKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRTSSS 347
                                                VEIELPVPDTLPTSAESS ++SS
Sbjct: 79  -------------------------------------VEIELPVPDTLPTSAESSGSNSS 98

Query: 348 TWVELYIESVHI 360
           TW+EL  E VH+
Sbjct: 139 TWLELNFEFVHV 98

The following BLAST results are available for this feature:
BLAST of Spg027335 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037581.18.1e-2657.36reverse transcriptase [Cucumis melo var. makuwa][more]
TYK03091.18.1e-2657.36reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0065516.15.3e-2563.25uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa][more]
TYJ98800.15.3e-2563.25uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa][more]
KAA0051980.11.8e-1749.24DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D... [more]
BLAST of Spg027335 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg027335 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BTP33.9e-2657.36Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5A7T7M63.9e-2657.36Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7VGQ52.6e-2563.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BG852.6e-2563.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U9X48.8e-1849.24DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of Spg027335 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg027335.1Spg027335.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016740 transferase activity