Spg025302 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTCCTGGCATCTTCCCGTTGCACTCTTTCTTGAAATCCTTTTGCGGCCCGCAGCTTAAGGCTGCTGTTTGGTAACAAGTTGCCCCACCAAAACTGTAGGGAAATGTGTGCAGTCACAACTTTATGGACAAGTTGTGACAAATTATTGGAGTGGAAAGGACGAAGAAGGGCAAGTGGCGACATTGGGAGATGGGCAAAATAAAGATAATGGATCCCAACTTGTGAGCCGTCGTGGTAGGTAAGTGCATGTTTGGAGGAATGACTAAAATCATTTTTGTCATGTTCGAAATTACTTCGAAATATATCTTTAATTATTCAAAATCAATGTCATTGTTTGGTTGTACCATTTTAAACGTGACTTTCATACCATCAAAATTAATTTTGAATTATTAAAGACATATGTCGGAGTGATTTTGAATATGACAAAAATGATTTTGACTATTTTAAAATCACTTGCAAACATGCACTAAATTATTGAAAAGTTACTTTTCAGTCAAAATCATTCCAAATCAATCAACTACGACCAATTAAGCTTAGTTTAATGATTGAAGTGTCAAAAAAGAGAAAAGGATTCGCTGAATTAGGTTCATATTCTGATTAAAATTATTTATGTGGAAGTGCGACTTTGCTAGATAAGAGGATGATCATGGATTTATAAGGGAGGACAAATATCTCCATTGGTATGAAATCTTTTGGATGGAACAAAAAACAAACTCATGAGAACTTATGTCCAAAGTAAACAATATCATACTATTCTCGAGATCTATGTCTTGTGTCCTGATCCTTACCCAGATTAAAACGACTTAGGCATTGACTTAGAGTCAAGAATCAGTAGAGGCAAATTTTGACACTCAAACACATTTCGTTTTTTAATGGCTTTGTCTCTTCTTGGAATGAAAACTTTTCCATGTCAGGCAACTTCAACGAAATCCTCCCCACCCTTTTCAACTCATTATATATATAGCCAAATATCCAAAAGATCAACAACCCAATCGGAGAAATTCATCAGAACACTCAATTATCTTTCTCTCGTTCCAAAGGTTTCCAAGTTCATCCTCAACGATGTCAGCCAAAGAAGCATCAGTACTATCTATAGAAACTGAAACTGGAAATGGAAAGAACGTCAGCTCCAAGGACGGGGATAGAGATTTCCTAATGGTGATAACAACATTCATCGCAACCATGGCCTTCCAAGCCGGAATCAACCCTCCCGGCGGCGTATGGGACGATGACGACAAGGGCCATGTAGCAGGCAAATCCATAATGGCTACAAAATCGCCAAATCAATTCATCCTTTTCATTACTGGCGTTACGGTCTGTCTTTCAGTTTCAGCTATGCAGCTTGTTGTGCTGTTGGTTAATTCAACAGACAACAGAAGGTCGGTTTCGAAGACTTTTATGTTCTTCTCCATTGGCTCCACCATATCATTCATGGCTGTAGCTTATTGGAACTCTGTTACAGCTTTGACGCCGGAATCAGAGATGTCTAAAGTCAAGCCTATGTTTTGGTTTACTATTGGATTCTCTGTTTTGCTGCCAATTTTAGTGTACCTATCGAAGAAACTTTTATCTCACTGCTACAAGAAGAATTGCCTTACTTGA ATGGTTCCTGGCATCTTCCCGTTGCACTCTTTCTTGAAATCCTTTTGCGGCCCGCAGCTTAAGGCTGCTGTTTGTGGAAAGGACGAAGAAGGGCAAGTGGCGACATTGGGAGATGGGCAAAATAAAGATAATGGATCCCAACTTGTGAGCCGTCGTGGTAGGTTTCCAAGTTCATCCTCAACGATGTCAGCCAAAGAAGCATCAGTACTATCTATAGAAACTGAAACTGGAAATGGAAAGAACGTCAGCTCCAAGGACGGGGATAGAGATTTCCTAATGGTGATAACAACATTCATCGCAACCATGGCCTTCCAAGCCGGAATCAACCCTCCCGGCGGCGTATGGGACGATGACGACAAGGGCCATGTAGCAGGCAAATCCATAATGGCTACAAAATCGCCAAATCAATTCATCCTTTTCATTACTGGCGTTACGGTCTGTCTTTCAGTTTCAGCTATGCAGCTTGTTGTGCTGTTGGTTAATTCAACAGACAACAGAAGGTCGGTTTCGAAGACTTTTATGTTCTTCTCCATTGGCTCCACCATATCATTCATGGCTGTAGCTTATTGGAACTCTGTTACAGCTTTGACGCCGGAATCAGAGATGTCTAAAGTCAAGCCTATGTTTTGGTTTACTATTGGATTCTCTGTTTTGCTGCCAATTTTAGTGTACCTATCGAAGAAACTTTTATCTCACTGCTACAAGAAGAATTGCCTTACTTGA ATGGTTCCTGGCATCTTCCCGTTGCACTCTTTCTTGAAATCCTTTTGCGGCCCGCAGCTTAAGGCTGCTGTTTGTGGAAAGGACGAAGAAGGGCAAGTGGCGACATTGGGAGATGGGCAAAATAAAGATAATGGATCCCAACTTGTGAGCCGTCGTGGTAGGTTTCCAAGTTCATCCTCAACGATGTCAGCCAAAGAAGCATCAGTACTATCTATAGAAACTGAAACTGGAAATGGAAAGAACGTCAGCTCCAAGGACGGGGATAGAGATTTCCTAATGGTGATAACAACATTCATCGCAACCATGGCCTTCCAAGCCGGAATCAACCCTCCCGGCGGCGTATGGGACGATGACGACAAGGGCCATGTAGCAGGCAAATCCATAATGGCTACAAAATCGCCAAATCAATTCATCCTTTTCATTACTGGCGTTACGGTCTGTCTTTCAGTTTCAGCTATGCAGCTTGTTGTGCTGTTGGTTAATTCAACAGACAACAGAAGGTCGGTTTCGAAGACTTTTATGTTCTTCTCCATTGGCTCCACCATATCATTCATGGCTGTAGCTTATTGGAACTCTGTTACAGCTTTGACGCCGGAATCAGAGATGTCTAAAGTCAAGCCTATGTTTTGGTTTACTATTGGATTCTCTGTTTTGCTGCCAATTTTAGTGTACCTATCGAAGAAACTTTTATCTCACTGCTACAAGAAGAATTGCCTTACTTGA MVPGIFPLHSFLKSFCGPQLKAAVCGKDEEGQVATLGDGQNKDNGSQLVSRRGRFPSSSSTMSAKEASVLSIETETGNGKNVSSKDGDRDFLMVITTFIATMAFQAGINPPGGVWDDDDKGHVAGKSIMATKSPNQFILFITGVTVCLSVSAMQLVVLLVNSTDNRRSVSKTFMFFSIGSTISFMAVAYWNSVTALTPESEMSKVKPMFWFTIGFSVLLPILVYLSKKLLSHCYKKNCLT Homology
BLAST of Spg025302 vs. NCBI nr
Match: XP_016899921.1 (PREDICTED: uncharacterized protein LOC107990705 [Cucumis melo]) HSP 1 Score: 167.2 bits (422), Expect = 1.8e-37 Identity = 98/179 (54.75%), Postives = 127/179 (70.95%), Query Frame = 0
BLAST of Spg025302 vs. NCBI nr
Match: KAA0064719.1 (ankyrin repeat-containing protein-like [Cucumis melo var. makuwa] >TYK00739.1 ankyrin repeat-containing protein-like [Cucumis melo var. makuwa]) HSP 1 Score: 150.6 bits (379), Expect = 1.7e-32 Identity = 82/141 (58.16%), Postives = 107/141 (75.89%), Query Frame = 0
BLAST of Spg025302 vs. NCBI nr
Match: XP_038884181.1 (uncharacterized protein LOC120075089 [Benincasa hispida]) HSP 1 Score: 143.3 bits (360), Expect = 2.8e-30 Identity = 84/178 (47.19%), Postives = 119/178 (66.85%), Query Frame = 0
BLAST of Spg025302 vs. NCBI nr
Match: KAE8647228.1 (hypothetical protein Csa_018955 [Cucumis sativus]) HSP 1 Score: 132.5 bits (332), Expect = 4.9e-27 Identity = 93/238 (39.08%), Postives = 133/238 (55.88%), Query Frame = 0
BLAST of Spg025302 vs. NCBI nr
Match: XP_004144204.1 (uncharacterized protein LOC101208403 [Cucumis sativus]) HSP 1 Score: 131.3 bits (329), Expect = 1.1e-26 Identity = 79/176 (44.89%), Postives = 111/176 (63.07%), Query Frame = 0
BLAST of Spg025302 vs. ExPASy TrEMBL
Match: A0A1S4DVA8 (uncharacterized protein LOC107990705 OS=Cucumis melo OX=3656 GN=LOC107990705 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 8.6e-38 Identity = 98/179 (54.75%), Postives = 127/179 (70.95%), Query Frame = 0
BLAST of Spg025302 vs. ExPASy TrEMBL
Match: A0A5D3BRK9 (Ankyrin repeat-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00290 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 8.4e-33 Identity = 82/141 (58.16%), Postives = 107/141 (75.89%), Query Frame = 0
BLAST of Spg025302 vs. ExPASy TrEMBL
Match: A0A0A0KIL3 (PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363520 PE=4 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 5.2e-27 Identity = 79/176 (44.89%), Postives = 111/176 (63.07%), Query Frame = 0
BLAST of Spg025302 vs. ExPASy TrEMBL
Match: A0A1S3BCY4 (uncharacterized protein LOC103488512 OS=Cucumis melo OX=3656 GN=LOC103488512 PE=4 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 5.2e-27 Identity = 78/176 (44.32%), Postives = 113/176 (64.20%), Query Frame = 0
BLAST of Spg025302 vs. ExPASy TrEMBL
Match: A0A0A0KFJ5 (PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363010 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 1.5e-26 Identity = 75/175 (42.86%), Postives = 114/175 (65.14%), Query Frame = 0
BLAST of Spg025302 vs. TAIR 10
Match: AT5G51160.1 (Ankyrin repeat family protein ) HSP 1 Score: 52.0 bits (123), Expect = 7.8e-07 Identity = 37/124 (29.84%), Postives = 58/124 (46.77%), Query Frame = 0
BLAST of Spg025302 vs. TAIR 10
Match: AT5G54710.1 (Ankyrin repeat family protein ) HSP 1 Score: 48.5 bits (114), Expect = 8.6e-06 Identity = 39/151 (25.83%), Postives = 65/151 (43.05%), Query Frame = 0
BLAST of Spg025302 vs. TAIR 10
Match: AT3G13950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13266.1); Has 339 Blast hits to 265 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.1 bits (113), Expect = 1.1e-05 Identity = 40/152 (26.32%), Postives = 75/152 (49.34%), Query Frame = 0
BLAST of Spg025302 vs. TAIR 10
Match: AT5G50140.1 (Ankyrin repeat family protein ) HSP 1 Score: 47.4 bits (111), Expect = 1.9e-05 Identity = 43/151 (28.48%), Postives = 69/151 (45.70%), Query Frame = 0
BLAST of Spg025302 vs. TAIR 10
Match: AT1G34050.1 (Ankyrin repeat family protein ) HSP 1 Score: 46.2 bits (108), Expect = 4.3e-05 Identity = 38/151 (25.17%), Postives = 71/151 (47.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|