Spg025011 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg025011
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Locationscaffold12: 12489783 .. 12492089 (-)
RNA-Seq ExpressionSpg025011
SyntenySpg025011
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGACTCTCAGCGCCAACTATTCAACTTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAAAACCAAACTCCATACCTCAGACACCAGATAAGGCAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACCAGGATGGATAGAAGATGTTTTTCCATTCTATGTAGTCTGTTGAGAACGACGTCCGGGTTGGTAGGAACGGAAATCGTAGATGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGCCGTACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGACTTCTTGCCAAGATGGGAGGTGGAAATGGTTTGAGGTATGGACACTATACGTTTGTACACATCGTTAAGATTTTACAACGTCCTTCTGACATTTGTAATGCGATGTGGAAACAGAATTGTTTAGGTGCATTGGACGGTACGTATGTAAAGGTCCATGTTAGTGCAGCTGATCGACCAAGGTATAGGACGCGAAAGGGTGAGATTGCAACAAATGTATTGGGCGTTGTGTCCCCAAAAGGTGAATTCATTTTTGTTATGCCGGGATGGGAAGGTTCGGCTGCTGATTCTCGTGTACTCAGAGATGCTATATCACGCCCCAATGGACTAATAGTGCCGAAGGGTATGGAACGAAGTATGAATGTAAAATAGGATCGATTACGTCATCCTTTGGTATTAAACATCTTTTATGAACAGGTTACTACTACCTCTGTGATGCCGGGTACCCAAACGCAGAGGGTTTCTTGACACCTTATAGAGGAGAGCGGTACCACTTAACCGACTGGCGTGGGGGAGGCAATCCACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTTCTGCATGGAATGTTATCGAGAGAGCATTCGGTGCTCTACAAGGACGGTGGGCGATACTTCGGGGGAAGTCCTACTACCCTGCTCGGACCCAGTGTTGAATCATAACAGCGTGTTGTTTACTCCACAACCTTATCACCCGAGAGATGGGTCTGGACGTTGGATTGGATGAAGGTGATGTTGGTCGATCTGAACCCGTACCTCTAGATGGTGAGAACATAACCTTCATTCAAAGCTCCACTGAATGGACGCAAAAGCGAGATGACCTAGCGAACAGGATGTTCAACGCGTGGGGACAACATATTCCCTGATCCAGTTTCGACATACGACTATCTGCTATGTTGTAATTTATACAGTTTTGACATTTCTTCGGCCGTACATTTTTTCTACAATCTAAACGATCTATTCCATGTAACTCAGTTTAGATTTATGGAAAACAATCGTTCATGTTGTTATTCTACATTATGTTTCTAACTTCTTGTCTGCGATTACTTCATAACTAACTATTCTACATTATGTCGCCGATAGTGTGAATTGATCAGAATACATACTTACGAAATCTAATGACACAATACTTTATGCATGTAGACTAATGGCAGGTGCAGATAAACAACAGAAGCACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCTTCCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCAGGCTGCAGTGGATTTGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGGTACGATCATTAGTCATTCATTGATGTAAATCATGTACAATATCGTTGCTAAAACACTCTTCAATACATGCAGTCACACTCGGCCGCAAAGGGGTTGCTGAACAAGCCATTTCCTCATTACTAGGATCTTGCTTTCGTGTTCGACAAAGACTGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCGAAACAGGCAGAAAACACCCACGGGGACGACGGGGGTGATCAGAATGTCCAGGCGGAACAGGATTGTTACGTCCCCGCCCCTCCAGACATTAATCTGGCCGCGGACATGGACTTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAGGGTCCTCCCAGAGTCGAAAGCGGAGCAGAGCTTCATATGAAGCTGAAGCCTTGATATTATGA

mRNA sequence

ATGGCTGACTCTCAGCGCCAACTATTCAACTTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAAAACCAAACTCCATACCTCAGACACCAGATAAGGCAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACCAGGATGGATAGAAGATGTTTTTCCATTCTATGTAGTCTGTTGAGAACGACGTCCGGGTTGGTAGGAACGGAAATCGTAGATGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGCCGTACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGACTTCTTGCCAAGATGGGAGACTAATGGCAGGTGCAGATAAACAACAGAAGCACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCTTCCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCAGGCTGCAGTGGATTTGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGGATCTTGCTTTCGTGTTCGACAAAGACTGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCGAAACAGGCAGAAAACACCCACGGGGACGACGGGGGTGATCAGAATGTCCAGGCGGAACAGGATTGTTACGTCCCCGCCCCTCCAGACATTAATCTGGCCGCGGACATGGACTTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAGGGTCCTCCCAGAGTCGAAAGCGGAGCAGAGCTTCATATGAAGCTGAAGCCTTGATATTATGA

Coding sequence (CDS)

ATGGCTGACTCTCAGCGCCAACTATTCAACTTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAAAACCAAACTCCATACCTCAGACACCAGATAAGGCAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACCAGGATGGATAGAAGATGTTTTTCCATTCTATGTAGTCTGTTGAGAACGACGTCCGGGTTGGTAGGAACGGAAATCGTAGATGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGCCGTACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGACTTCTTGCCAAGATGGGAGACTAATGGCAGGTGCAGATAAACAACAGAAGCACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCTTCCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCAGGCTGCAGTGGATTTGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGGATCTTGCTTTCGTGTTCGACAAAGACTGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCGAAACAGGCAGAAAACACCCACGGGGACGACGGGGGTGATCAGAATGTCCAGGCGGAACAGGATTGTTACGTCCCCGCCCCTCCAGACATTAATCTGGCCGCGGACATGGACTTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAGGGTCCTCCCAGAGTCGAAAGCGGAGCAGAGCTTCATATGAAGCTGAAGCCTTGATATTATGA

Protein sequence

MADSQRQLFNLINSFMNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPEPITTSCQDGRLMAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKDLAFVFDKDWASGGACNVPAKQAENTHGDDGGDQNVQAEQDCYVPAPPDINLAADMDFEDVPITPTSRPSTAGSSQSRKRSRASYEAEALIL
Homology
BLAST of Spg025011 vs. NCBI nr
Match: KAA0036474.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 248.8 bits (634), Expect = 6.8e-62
Identity = 154/448 (34.38%), Postives = 198/448 (44.20%), Query Frame = 0

Query: 16  MNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFSILCSLLRTTSGLVG 75
           MNN+ R+ +  P  RH+IR+LA FR+IHESDL CR+STRMDRR F+ILC LLR  +GL  
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 76  TEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPE 135
           TEIVDVEEMVAMFLHI AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P 
Sbjct: 61  TEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120

Query: 136 PITTSCQDGRL------------------------------------------------- 195
           P+T++C D R                                                  
Sbjct: 121 PVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 180

Query: 196 ------------------------------------------------------------ 255
                                                                       
Sbjct: 181 YVLAGWKGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 240

Query: 256 ------------------------------------------------------------ 260
                                                                       
Sbjct: 241 RGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSEMTYCDDVEDEDEGDST 300

BLAST of Spg025011 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 248.4 bits (633), Expect = 8.9e-62
Identity = 134/299 (44.82%), Postives = 184/299 (61.54%), Query Frame = 0

Query: 66  LLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLR 125
           +LRT  GL  T+ VDVEEMV +FLHI+AHDVKNRV RR FARSGETVSRHFN  L+ VLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 126 LYDVLLKKPEPITTSCQDGR-----LMAGADKQQKHIWTRQEEARLVESLVELVHEGGWR 185
           L+++LLK+P+ +T SC   +     + +   K  KH WT  E+  LVE L++LV +G WR
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 186 GDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGW 245
            DNGTF+ GYL ++++++K+K+    I+ T  ++  V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 246 NDEFKCIQAEREVYDAWVK-----------------DLAFVFDKDWASGGACNVPAKQAE 305
           N E KCI+AE+ V + WVK                 DL  VF +D A+GG C  P +   
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

Query: 306 NTHGDDGGDQNVQAEQDCYVPAPPDINLAADMDFEDVPITPTSRPSTAGSSQSRKRSRA 343
            T  D   D  +   +D  +P P  +   +    ED+P TPTS    AGSS+  K+ R+
Sbjct: 241 QTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAHDAGSSRPSKKRRS 296

BLAST of Spg025011 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 246.1 bits (627), Expect = 4.4e-61
Identity = 133/299 (44.48%), Postives = 183/299 (61.20%), Query Frame = 0

Query: 66  LLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLR 125
           +LRT  GL  T+ VDVEEMV +FLHI+AHDVKNRV RR FARSGETVSRHFN  L+ VLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 126 LYDVLLKKPEPITTSCQDGR-----LMAGADKQQKHIWTRQEEARLVESLVELVHEGGWR 185
           L+++LLK+P+ +T SC   +     + +   K  KH WT  E+  LVE L++LV +G WR
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 186 GDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGW 245
            DNGTF+ GYL ++++++K+K+    I+ T  ++  V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 246 NDEFKCIQAEREVYDAWVK-----------------DLAFVFDKDWASGGACNVPAKQAE 305
           N E KCI+AE+ V + WVK                 DL  VF +D A+GG C  P +   
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

Query: 306 NTHGDDGGDQNVQAEQDCYVPAPPDINLAADMDFEDVPITPTSRPSTAGSSQSRKRSRA 343
            T  D   D  +   +D  +P P  +   +    ED+P TPTS    AGS +  K+ R+
Sbjct: 241 QTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAHDAGSFRPSKKRRS 296

BLAST of Spg025011 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 243.0 bits (619), Expect = 3.7e-60
Identity = 179/550 (32.55%), Postives = 231/550 (42.00%), Query Frame = 0

Query: 4   SQRQLFNLINSFMNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFSIL 63
           SQRQL  ++    N+  RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCF+IL
Sbjct: 16  SQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAIL 75

Query: 64  CSLLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAV 123
           C LLRT +GL  TE+VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGET+SRHFN  L AV
Sbjct: 76  CHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAV 135

Query: 124 LRLYDVLLKKPEPITTSCQDGR-------------------------------------- 183
           +RL+D LLKKP+P+   C D R                                      
Sbjct: 136 IRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATN 195

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 196 VLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLA 255

Query: 244 ------------------------------------------------------------ 303
                                                                       
Sbjct: 256 PYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYHPVE 315

Query: 304 ------------------------------LMAGADKQQKHIWTRQEEARLVESLVELVH 349
                                          M  + +  KH WT++EEA     LVELV+
Sbjct: 316 VQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEEA----GLVELVN 375

BLAST of Spg025011 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 235.0 bits (598), Expect = 1.0e-57
Identity = 144/358 (40.22%), Postives = 185/358 (51.68%), Query Frame = 0

Query: 55  MDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSR 114
           MDRRCF+ILC++LRT  GL  T+ VDV+EMV +FLHI+AHDVKNRV RR  ARSGETVSR
Sbjct: 1   MDRRCFTILCTMLRTRGGLEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSR 60

Query: 115 HFNATLSAVLRLYDVLLKKPEPITTSCQ-DG----------------------------- 174
           HFNA L+AVLRL+++LLK+P+P+T SC  DG                             
Sbjct: 61  HFNAVLNAVLRLHEILLKQPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTT 120

Query: 175 ----------------RLMAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRA 234
                            + +   K  KH WT  E+  LVE L++LV EGGWR DNGTF+ 
Sbjct: 121 YVMLVIQMLKDSSLHTEMASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKL 180

Query: 235 GYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQ 294
           GYL                              +QY+AI+EM+GP CSGFGWN+  KCI+
Sbjct: 181 GYL------------------------------KQYTAIAEMMGPACSGFGWNEGQKCIE 240

Query: 295 AEREVYDAWVK-----------------DLAFVFDKDWASGGACNVPAKQAENTHGDDGG 350
            E+ V+D WVK                 DL  VF +D A+GG C  P + +  T  D   
Sbjct: 241 VEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQTARDTEE 300

BLAST of Spg025011 vs. ExPASy TrEMBL
Match: A0A5A7SYW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00430 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.3e-62
Identity = 154/448 (34.38%), Postives = 198/448 (44.20%), Query Frame = 0

Query: 16  MNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFSILCSLLRTTSGLVG 75
           MNN+ R+ +  P  RH+IR+LA FR+IHESDL CR+STRMDRR F+ILC LLR  +GL  
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 76  TEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPE 135
           TEIVDVEEMVAMFLHI AHDVKNRVI+R+F RSGETVSRHFN  L AVLRLY+ L+K+P 
Sbjct: 61  TEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120

Query: 136 PITTSCQDGRL------------------------------------------------- 195
           P+T++C D R                                                  
Sbjct: 121 PVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 180

Query: 196 ------------------------------------------------------------ 255
                                                                       
Sbjct: 181 YVLAGWKGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 240

Query: 256 ------------------------------------------------------------ 260
                                                                       
Sbjct: 241 RGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSEMTYCDDVEDEDEGDST 300

BLAST of Spg025011 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.3e-62
Identity = 134/299 (44.82%), Postives = 184/299 (61.54%), Query Frame = 0

Query: 66  LLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLR 125
           +LRT  GL  T+ VDVEEMV +FLHI+AHDVKNRV RR FARSGETVSRHFN  L+ VLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 126 LYDVLLKKPEPITTSCQDGR-----LMAGADKQQKHIWTRQEEARLVESLVELVHEGGWR 185
           L+++LLK+P+ +T SC   +     + +   K  KH WT  E+  LVE L++LV +G WR
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 186 GDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGW 245
            DNGTF+ GYL ++++++K+K+    I+ T  ++  V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 246 NDEFKCIQAEREVYDAWVK-----------------DLAFVFDKDWASGGACNVPAKQAE 305
           N E KCI+AE+ V + WVK                 DL  VF +D A+GG C  P +   
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

Query: 306 NTHGDDGGDQNVQAEQDCYVPAPPDINLAADMDFEDVPITPTSRPSTAGSSQSRKRSRA 343
            T  D   D  +   +D  +P P  +   +    ED+P TPTS    AGSS+  K+ R+
Sbjct: 241 QTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAHDAGSSRPSKKRRS 296

BLAST of Spg025011 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.1e-61
Identity = 133/299 (44.48%), Postives = 183/299 (61.20%), Query Frame = 0

Query: 66  LLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLR 125
           +LRT  GL  T+ VDVEEMV +FLHI+AHDVKNRV RR FARSGETVSRHFN  L+ VLR
Sbjct: 1   MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60

Query: 126 LYDVLLKKPEPITTSCQDGR-----LMAGADKQQKHIWTRQEEARLVESLVELVHEGGWR 185
           L+++LLK+P+ +T SC   +     + +   K  KH WT  E+  LVE L++LV +G WR
Sbjct: 61  LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120

Query: 186 GDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGW 245
            DNGTF+ GYL ++++++K+K+    I+ T  ++  V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180

Query: 246 NDEFKCIQAEREVYDAWVK-----------------DLAFVFDKDWASGGACNVPAKQAE 305
           N E KCI+AE+ V + WVK                 DL  VF +D A+GG C  P +   
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240

Query: 306 NTHGDDGGDQNVQAEQDCYVPAPPDINLAADMDFEDVPITPTSRPSTAGSSQSRKRSRA 343
            T  D   D  +   +D  +P P  +   +    ED+P TPTS    AGS +  K+ R+
Sbjct: 241 QTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAHDAGSFRPSKKRRS 296

BLAST of Spg025011 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-60
Identity = 179/550 (32.55%), Postives = 231/550 (42.00%), Query Frame = 0

Query: 4   SQRQLFNLINSFMNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFSIL 63
           SQRQL  ++    N+  RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCF+IL
Sbjct: 16  SQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAIL 75

Query: 64  CSLLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAV 123
           C LLRT +GL  TE+VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGET+SRHFN  L AV
Sbjct: 76  CHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAV 135

Query: 124 LRLYDVLLKKPEPITTSCQDGR-------------------------------------- 183
           +RL+D LLKKP+P+   C D R                                      
Sbjct: 136 IRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATN 195

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 196 VLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLA 255

Query: 244 ------------------------------------------------------------ 303
                                                                       
Sbjct: 256 PYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYHPVE 315

Query: 304 ------------------------------LMAGADKQQKHIWTRQEEARLVESLVELVH 349
                                          M  + +  KH WT++EEA     LVELV+
Sbjct: 316 VQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEEA----GLVELVN 375

BLAST of Spg025011 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 4.9e-58
Identity = 144/358 (40.22%), Postives = 185/358 (51.68%), Query Frame = 0

Query: 55  MDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSR 114
           MDRRCF+ILC++LRT  GL  T+ VDV+EMV +FLHI+AHDVKNRV RR  ARSGETVSR
Sbjct: 1   MDRRCFTILCTMLRTRGGLEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSR 60

Query: 115 HFNATLSAVLRLYDVLLKKPEPITTSCQ-DG----------------------------- 174
           HFNA L+AVLRL+++LLK+P+P+T SC  DG                             
Sbjct: 61  HFNAVLNAVLRLHEILLKQPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTT 120

Query: 175 ----------------RLMAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRA 234
                            + +   K  KH WT  E+  LVE L++LV EGGWR DNGTF+ 
Sbjct: 121 YVMLVIQMLKDSSLHTEMASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKL 180

Query: 235 GYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQ 294
           GYL                              +QY+AI+EM+GP CSGFGWN+  KCI+
Sbjct: 181 GYL------------------------------KQYTAIAEMMGPACSGFGWNEGQKCIE 240

Query: 295 AEREVYDAWVK-----------------DLAFVFDKDWASGGACNVPAKQAENTHGDDGG 350
            E+ V+D WVK                 DL  VF +D A+GG C  P + +  T  D   
Sbjct: 241 VEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQTARDTEE 300

BLAST of Spg025011 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 9.0e-12
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = 0

Query: 39  FRLIHESDLCCRESTRMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKN 98
           +++++  +  C E+ RMD+  F  LC LL+T   L  T  + +E  +A+FL II H+++ 
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91

Query: 99  RVIRRQFARSGETVSRHFNATLSAVLRL 127
           R ++  F  SGET+SRHFN  L+AV+ +
Sbjct: 92  RAVQELFCYSGETISRHFNNVLNAVIAI 119

BLAST of Spg025011 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 9.6e-06
Identity = 28/85 (32.94%), Postives = 46/85 (54.12%), Query Frame = 0

Query: 42  IHESDLCCRESTRMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVI 101
           I+ +++ C+   RM    F+ LC +L    GL  +  + ++E VA+FL I A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 102 RRQFARSGETVSRHFNATLSAVLRL 127
             +F  + ET+ R F+  L A+ RL
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERL 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0036474.16.8e-6234.38retrotransposon protein [Cucumis melo var. makuwa][more]
TYK26842.18.9e-6244.82uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa][more]
KAA0033487.14.4e-6144.48uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa][more]
KAA0034843.13.7e-6032.55retrotransposon protein [Cucumis melo var. makuwa][more]
TYK07921.11.0e-5740.22hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SYW13.3e-6234.38Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DTL04.3e-6244.82Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7SW622.1e-6144.48Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7SWD81.8e-6032.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C7T44.9e-5840.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT5G41980.19.0e-1238.64CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT5G28730.19.6e-0632.94unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024752Myb/SANT-like domainPFAMPF12776Myb_DNA-bind_3coord: 158..256
e-value: 1.1E-6
score: 29.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 316..351
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 323..339
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 151..317
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 151..317

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg025011.1Spg025011.1mRNA