Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGACTCTCAGCGCCAACTATTCAACTTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAAAACCAAACTCCATACCTCAGACACCAGATAAGGCAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACCAGGATGGATAGAAGATGTTTTTCCATTCTATGTAGTCTGTTGAGAACGACGTCCGGGTTGGTAGGAACGGAAATCGTAGATGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGCCGTACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGACTTCTTGCCAAGATGGGAGGTGGAAATGGTTTGAGGTATGGACACTATACGTTTGTACACATCGTTAAGATTTTACAACGTCCTTCTGACATTTGTAATGCGATGTGGAAACAGAATTGTTTAGGTGCATTGGACGGTACGTATGTAAAGGTCCATGTTAGTGCAGCTGATCGACCAAGGTATAGGACGCGAAAGGGTGAGATTGCAACAAATGTATTGGGCGTTGTGTCCCCAAAAGGTGAATTCATTTTTGTTATGCCGGGATGGGAAGGTTCGGCTGCTGATTCTCGTGTACTCAGAGATGCTATATCACGCCCCAATGGACTAATAGTGCCGAAGGGTATGGAACGAAGTATGAATGTAAAATAGGATCGATTACGTCATCCTTTGGTATTAAACATCTTTTATGAACAGGTTACTACTACCTCTGTGATGCCGGGTACCCAAACGCAGAGGGTTTCTTGACACCTTATAGAGGAGAGCGGTACCACTTAACCGACTGGCGTGGGGGAGGCAATCCACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTTCTGCATGGAATGTTATCGAGAGAGCATTCGGTGCTCTACAAGGACGGTGGGCGATACTTCGGGGGAAGTCCTACTACCCTGCTCGGACCCAGTGTTGAATCATAACAGCGTGTTGTTTACTCCACAACCTTATCACCCGAGAGATGGGTCTGGACGTTGGATTGGATGAAGGTGATGTTGGTCGATCTGAACCCGTACCTCTAGATGGTGAGAACATAACCTTCATTCAAAGCTCCACTGAATGGACGCAAAAGCGAGATGACCTAGCGAACAGGATGTTCAACGCGTGGGGACAACATATTCCCTGATCCAGTTTCGACATACGACTATCTGCTATGTTGTAATTTATACAGTTTTGACATTTCTTCGGCCGTACATTTTTTCTACAATCTAAACGATCTATTCCATGTAACTCAGTTTAGATTTATGGAAAACAATCGTTCATGTTGTTATTCTACATTATGTTTCTAACTTCTTGTCTGCGATTACTTCATAACTAACTATTCTACATTATGTCGCCGATAGTGTGAATTGATCAGAATACATACTTACGAAATCTAATGACACAATACTTTATGCATGTAGACTAATGGCAGGTGCAGATAAACAACAGAAGCACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCTTCCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCAGGCTGCAGTGGATTTGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGGTACGATCATTAGTCATTCATTGATGTAAATCATGTACAATATCGTTGCTAAAACACTCTTCAATACATGCAGTCACACTCGGCCGCAAAGGGGTTGCTGAACAAGCCATTTCCTCATTACTAGGATCTTGCTTTCGTGTTCGACAAAGACTGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCGAAACAGGCAGAAAACACCCACGGGGACGACGGGGGTGATCAGAATGTCCAGGCGGAACAGGATTGTTACGTCCCCGCCCCTCCAGACATTAATCTGGCCGCGGACATGGACTTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAGGGTCCTCCCAGAGTCGAAAGCGGAGCAGAGCTTCATATGAAGCTGAAGCCTTGATATTATGA
mRNA sequence
ATGGCTGACTCTCAGCGCCAACTATTCAACTTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAAAACCAAACTCCATACCTCAGACACCAGATAAGGCAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACCAGGATGGATAGAAGATGTTTTTCCATTCTATGTAGTCTGTTGAGAACGACGTCCGGGTTGGTAGGAACGGAAATCGTAGATGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGCCGTACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGACTTCTTGCCAAGATGGGAGACTAATGGCAGGTGCAGATAAACAACAGAAGCACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCTTCCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCAGGCTGCAGTGGATTTGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGGATCTTGCTTTCGTGTTCGACAAAGACTGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCGAAACAGGCAGAAAACACCCACGGGGACGACGGGGGTGATCAGAATGTCCAGGCGGAACAGGATTGTTACGTCCCCGCCCCTCCAGACATTAATCTGGCCGCGGACATGGACTTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAGGGTCCTCCCAGAGTCGAAAGCGGAGCAGAGCTTCATATGAAGCTGAAGCCTTGATATTATGA
Coding sequence (CDS)
ATGGCTGACTCTCAGCGCCAACTATTCAACTTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAAAACCAAACTCCATACCTCAGACACCAGATAAGGCAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAGCACCAGGATGGATAGAAGATGTTTTTCCATTCTATGTAGTCTGTTGAGAACGACGTCCGGGTTGGTAGGAACGGAAATCGTAGATGTGGAAGAGATGGTCGCGATGTTCTTGCACATCATTGCTCATGATGTTAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCGGGCGAAACCGTTTCTCGGCACTTCAACGCGACTTTGAGTGCCGTACTACGATTGTACGACGTTCTACTTAAGAAACCTGAACCGATCACGACTTCTTGCCAAGATGGGAGACTAATGGCAGGTGCAGATAAACAACAGAAGCACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCTTCCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCAGGCTGCAGTGGATTTGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGGATCTTGCTTTCGTGTTCGACAAAGACTGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCGAAACAGGCAGAAAACACCCACGGGGACGACGGGGGTGATCAGAATGTCCAGGCGGAACAGGATTGTTACGTCCCCGCCCCTCCAGACATTAATCTGGCCGCGGACATGGACTTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAGGGTCCTCCCAGAGTCGAAAGCGGAGCAGAGCTTCATATGAAGCTGAAGCCTTGATATTATGA
Protein sequence
MADSQRQLFNLINSFMNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPEPITTSCQDGRLMAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKDLAFVFDKDWASGGACNVPAKQAENTHGDDGGDQNVQAEQDCYVPAPPDINLAADMDFEDVPITPTSRPSTAGSSQSRKRSRASYEAEALIL
Homology
BLAST of Spg025011 vs. NCBI nr
Match:
KAA0036474.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 248.8 bits (634), Expect = 6.8e-62
Identity = 154/448 (34.38%), Postives = 198/448 (44.20%), Query Frame = 0
Query: 16 MNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFSILCSLLRTTSGLVG 75
MNN+ R+ + P RH+IR+LA FR+IHESDL CR+STRMDRR F+ILC LLR +GL
Sbjct: 1 MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60
Query: 76 TEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPE 135
TEIVDVEEMVAMFLHI AHDVKNRVI+R+F RSGETVSRHFN L AVLRLY+ L+K+P
Sbjct: 61 TEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120
Query: 136 PITTSCQDGRL------------------------------------------------- 195
P+T++C D R
Sbjct: 121 PVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 180
Query: 196 ------------------------------------------------------------ 255
Sbjct: 181 YVLAGWKGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 240
Query: 256 ------------------------------------------------------------ 260
Sbjct: 241 RGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSEMTYCDDVEDEDEGDST 300
BLAST of Spg025011 vs. NCBI nr
Match:
TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])
HSP 1 Score: 248.4 bits (633), Expect = 8.9e-62
Identity = 134/299 (44.82%), Postives = 184/299 (61.54%), Query Frame = 0
Query: 66 LLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLR 125
+LRT GL T+ VDVEEMV +FLHI+AHDVKNRV RR FARSGETVSRHFN L+ VLR
Sbjct: 1 MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60
Query: 126 LYDVLLKKPEPITTSCQDGR-----LMAGADKQQKHIWTRQEEARLVESLVELVHEGGWR 185
L+++LLK+P+ +T SC + + + K KH WT E+ LVE L++LV +G WR
Sbjct: 61 LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120
Query: 186 GDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGW 245
DNGTF+ GYL ++++++K+K+ I+ T ++ V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180
Query: 246 NDEFKCIQAEREVYDAWVK-----------------DLAFVFDKDWASGGACNVPAKQAE 305
N E KCI+AE+ V + WVK DL VF +D A+GG C P +
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
Query: 306 NTHGDDGGDQNVQAEQDCYVPAPPDINLAADMDFEDVPITPTSRPSTAGSSQSRKRSRA 343
T D D + +D +P P + + ED+P TPTS AGSS+ K+ R+
Sbjct: 241 QTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAHDAGSSRPSKKRRS 296
BLAST of Spg025011 vs. NCBI nr
Match:
KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])
HSP 1 Score: 246.1 bits (627), Expect = 4.4e-61
Identity = 133/299 (44.48%), Postives = 183/299 (61.20%), Query Frame = 0
Query: 66 LLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLR 125
+LRT GL T+ VDVEEMV +FLHI+AHDVKNRV RR FARSGETVSRHFN L+ VLR
Sbjct: 1 MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60
Query: 126 LYDVLLKKPEPITTSCQDGR-----LMAGADKQQKHIWTRQEEARLVESLVELVHEGGWR 185
L+++LLK+P+ +T SC + + + K KH WT E+ LVE L++LV +G WR
Sbjct: 61 LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120
Query: 186 GDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGW 245
DNGTF+ GYL ++++++K+K+ I+ T ++ V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180
Query: 246 NDEFKCIQAEREVYDAWVK-----------------DLAFVFDKDWASGGACNVPAKQAE 305
N E KCI+AE+ V + WVK DL VF +D A+GG C P +
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
Query: 306 NTHGDDGGDQNVQAEQDCYVPAPPDINLAADMDFEDVPITPTSRPSTAGSSQSRKRSRA 343
T D D + +D +P P + + ED+P TPTS AGS + K+ R+
Sbjct: 241 QTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAHDAGSFRPSKKRRS 296
BLAST of Spg025011 vs. NCBI nr
Match:
KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 243.0 bits (619), Expect = 3.7e-60
Identity = 179/550 (32.55%), Postives = 231/550 (42.00%), Query Frame = 0
Query: 4 SQRQLFNLINSFMNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFSIL 63
SQRQL ++ N+ RI + RH+IRQLA FR+IH SDL CR+STRMDRRCF+IL
Sbjct: 16 SQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAIL 75
Query: 64 CSLLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAV 123
C LLRT +GL TE+VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGET+SRHFN L AV
Sbjct: 76 CHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAV 135
Query: 124 LRLYDVLLKKPEPITTSCQDGR-------------------------------------- 183
+RL+D LLKKP+P+ C D R
Sbjct: 136 IRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATN 195
Query: 184 ------------------------------------------------------------ 243
Sbjct: 196 VLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLA 255
Query: 244 ------------------------------------------------------------ 303
Sbjct: 256 PYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYHPVE 315
Query: 304 ------------------------------LMAGADKQQKHIWTRQEEARLVESLVELVH 349
M + + KH WT++EEA LVELV+
Sbjct: 316 VQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEEA----GLVELVN 375
BLAST of Spg025011 vs. NCBI nr
Match:
TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 235.0 bits (598), Expect = 1.0e-57
Identity = 144/358 (40.22%), Postives = 185/358 (51.68%), Query Frame = 0
Query: 55 MDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSR 114
MDRRCF+ILC++LRT GL T+ VDV+EMV +FLHI+AHDVKNRV RR ARSGETVSR
Sbjct: 1 MDRRCFTILCTMLRTRGGLEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSR 60
Query: 115 HFNATLSAVLRLYDVLLKKPEPITTSCQ-DG----------------------------- 174
HFNA L+AVLRL+++LLK+P+P+T SC DG
Sbjct: 61 HFNAVLNAVLRLHEILLKQPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTT 120
Query: 175 ----------------RLMAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRA 234
+ + K KH WT E+ LVE L++LV EGGWR DNGTF+
Sbjct: 121 YVMLVIQMLKDSSLHTEMASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKL 180
Query: 235 GYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQ 294
GYL +QY+AI+EM+GP CSGFGWN+ KCI+
Sbjct: 181 GYL------------------------------KQYTAIAEMMGPACSGFGWNEGQKCIE 240
Query: 295 AEREVYDAWVK-----------------DLAFVFDKDWASGGACNVPAKQAENTHGDDGG 350
E+ V+D WVK DL VF +D A+GG C P + + T D
Sbjct: 241 VEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQTARDTEE 300
BLAST of Spg025011 vs. ExPASy TrEMBL
Match:
A0A5A7SYW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00430 PE=3 SV=1)
HSP 1 Score: 248.8 bits (634), Expect = 3.3e-62
Identity = 154/448 (34.38%), Postives = 198/448 (44.20%), Query Frame = 0
Query: 16 MNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFSILCSLLRTTSGLVG 75
MNN+ R+ + P RH+IR+LA FR+IHESDL CR+STRMDRR F+ILC LLR +GL
Sbjct: 1 MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60
Query: 76 TEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLRLYDVLLKKPE 135
TEIVDVEEMVAMFLHI AHDVKNRVI+R+F RSGETVSRHFN L AVLRLY+ L+K+P
Sbjct: 61 TEIVDVEEMVAMFLHIFAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPV 120
Query: 136 PITTSCQDGRL------------------------------------------------- 195
P+T++C D R
Sbjct: 121 PVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFV 180
Query: 196 ------------------------------------------------------------ 255
Sbjct: 181 YVLAGWKGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRYHLQEW 240
Query: 256 ------------------------------------------------------------ 260
Sbjct: 241 RGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSEMTYCDDVEDEDEGDST 300
BLAST of Spg025011 vs. ExPASy TrEMBL
Match:
A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)
HSP 1 Score: 248.4 bits (633), Expect = 4.3e-62
Identity = 134/299 (44.82%), Postives = 184/299 (61.54%), Query Frame = 0
Query: 66 LLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLR 125
+LRT GL T+ VDVEEMV +FLHI+AHDVKNRV RR FARSGETVSRHFN L+ VLR
Sbjct: 1 MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60
Query: 126 LYDVLLKKPEPITTSCQDGR-----LMAGADKQQKHIWTRQEEARLVESLVELVHEGGWR 185
L+++LLK+P+ +T SC + + + K KH WT E+ LVE L++LV +G WR
Sbjct: 61 LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120
Query: 186 GDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGW 245
DNGTF+ GYL ++++++K+K+ I+ T ++ V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180
Query: 246 NDEFKCIQAEREVYDAWVK-----------------DLAFVFDKDWASGGACNVPAKQAE 305
N E KCI+AE+ V + WVK DL VF +D A+GG C P +
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
Query: 306 NTHGDDGGDQNVQAEQDCYVPAPPDINLAADMDFEDVPITPTSRPSTAGSSQSRKRSRA 343
T D D + +D +P P + + ED+P TPTS AGSS+ K+ R+
Sbjct: 241 QTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAHDAGSSRPSKKRRS 296
BLAST of Spg025011 vs. ExPASy TrEMBL
Match:
A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)
HSP 1 Score: 246.1 bits (627), Expect = 2.1e-61
Identity = 133/299 (44.48%), Postives = 183/299 (61.20%), Query Frame = 0
Query: 66 LLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAVLR 125
+LRT GL T+ VDVEEMV +FLHI+AHDVKNRV RR FARSGETVSRHFN L+ VLR
Sbjct: 1 MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60
Query: 126 LYDVLLKKPEPITTSCQDGR-----LMAGADKQQKHIWTRQEEARLVESLVELVHEGGWR 185
L+++LLK+P+ +T SC + + + K KH WT E+ LVE L++LV +G WR
Sbjct: 61 LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120
Query: 186 GDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGW 245
DNGTF+ GYL ++++++K+K+ I+ T ++ V+ LK+QY+ I+EM+GP CSGF W
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180
Query: 246 NDEFKCIQAEREVYDAWVK-----------------DLAFVFDKDWASGGACNVPAKQAE 305
N E KCI+AE+ V + WVK DL VF +D A+GG C P +
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
Query: 306 NTHGDDGGDQNVQAEQDCYVPAPPDINLAADMDFEDVPITPTSRPSTAGSSQSRKRSRA 343
T D D + +D +P P + + ED+P TPTS AGS + K+ R+
Sbjct: 241 QTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAHDAGSFRPSKKRRS 296
BLAST of Spg025011 vs. ExPASy TrEMBL
Match:
A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)
HSP 1 Score: 243.0 bits (619), Expect = 1.8e-60
Identity = 179/550 (32.55%), Postives = 231/550 (42.00%), Query Frame = 0
Query: 4 SQRQLFNLINSFMNNHPRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFSIL 63
SQRQL ++ N+ RI + RH+IRQLA FR+IH SDL CR+STRMDRRCF+IL
Sbjct: 16 SQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAIL 75
Query: 64 CSLLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSRHFNATLSAV 123
C LLRT +GL TE+VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGET+SRHFN L AV
Sbjct: 76 CHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAV 135
Query: 124 LRLYDVLLKKPEPITTSCQDGR-------------------------------------- 183
+RL+D LLKKP+P+ C D R
Sbjct: 136 IRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATN 195
Query: 184 ------------------------------------------------------------ 243
Sbjct: 196 VLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLA 255
Query: 244 ------------------------------------------------------------ 303
Sbjct: 256 PYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYHPVE 315
Query: 304 ------------------------------LMAGADKQQKHIWTRQEEARLVESLVELVH 349
M + + KH WT++EEA LVELV+
Sbjct: 316 VQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEEA----GLVELVN 375
BLAST of Spg025011 vs. ExPASy TrEMBL
Match:
A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)
HSP 1 Score: 235.0 bits (598), Expect = 4.9e-58
Identity = 144/358 (40.22%), Postives = 185/358 (51.68%), Query Frame = 0
Query: 55 MDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVIRRQFARSGETVSR 114
MDRRCF+ILC++LRT GL T+ VDV+EMV +FLHI+AHDVKNRV RR ARSGETVSR
Sbjct: 1 MDRRCFTILCTMLRTRGGLEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSR 60
Query: 115 HFNATLSAVLRLYDVLLKKPEPITTSCQ-DG----------------------------- 174
HFNA L+AVLRL+++LLK+P+P+T SC DG
Sbjct: 61 HFNAVLNAVLRLHEILLKQPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTT 120
Query: 175 ----------------RLMAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRA 234
+ + K KH WT E+ LVE L++LV EGGWR DNGTF+
Sbjct: 121 YVMLVIQMLKDSSLHTEMASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKL 180
Query: 235 GYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQ 294
GYL +QY+AI+EM+GP CSGFGWN+ KCI+
Sbjct: 181 GYL------------------------------KQYTAIAEMMGPACSGFGWNEGQKCIE 240
Query: 295 AEREVYDAWVK-----------------DLAFVFDKDWASGGACNVPAKQAENTHGDDGG 350
E+ V+D WVK DL VF +D A+GG C P + + T D
Sbjct: 241 VEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQTARDTEE 300
BLAST of Spg025011 vs. TAIR 10
Match:
AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 68.9 bits (167), Expect = 9.0e-12
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = 0
Query: 39 FRLIHESDLCCRESTRMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKN 98
+++++ + C E+ RMD+ F LC LL+T L T + +E +A+FL II H+++
Sbjct: 32 YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91
Query: 99 RVIRRQFARSGETVSRHFNATLSAVLRL 127
R ++ F SGET+SRHFN L+AV+ +
Sbjct: 92 RAVQELFCYSGETISRHFNNVLNAVIAI 119
BLAST of Spg025011 vs. TAIR 10
Match:
AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 48.9 bits (115), Expect = 9.6e-06
Identity = 28/85 (32.94%), Postives = 46/85 (54.12%), Query Frame = 0
Query: 42 IHESDLCCRESTRMDRRCFSILCSLLRTTSGLVGTEIVDVEEMVAMFLHIIAHDVKNRVI 101
I+ +++ C+ RM F+ LC +L GL + + ++E VA+FL I A + R I
Sbjct: 17 IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76
Query: 102 RRQFARSGETVSRHFNATLSAVLRL 127
+F + ET+ R F+ L A+ RL
Sbjct: 77 ALRFGHAQETIWRKFHDVLKAMERL 101
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0036474.1 | 6.8e-62 | 34.38 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK26842.1 | 8.9e-62 | 44.82 | uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa] | [more] |
KAA0033487.1 | 4.4e-61 | 44.48 | uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa] | [more] |
KAA0034843.1 | 3.7e-60 | 32.55 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK07921.1 | 1.0e-57 | 40.22 | hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SYW1 | 3.3e-62 | 34.38 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3DTL0 | 4.3e-62 | 44.82 | Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7SW62 | 2.1e-61 | 44.48 | Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7SWD8 | 1.8e-60 | 32.55 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3C7T4 | 4.9e-58 | 40.22 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
AT5G41980.1 | 9.0e-12 | 38.64 | CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... | [more] |
AT5G28730.1 | 9.6e-06 | 32.94 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |