Spg024801 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024801
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Dynein light chain
Location	scaffold12: 8011787 .. 8012686 (+)
RNA-Seq Expression	Spg024801
Synteny	Spg024801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGAAGGGAAGGCTTTGATTGATGATACAGACATGCCTCTCAAATTGCAGATCCAAGCCATGAAAGCTGCTTCTGAAGCTCTCGATCTCTATGATGTTTTTGACTGTAAATCCATTGCTGCCCACATCAAGAAGGTTCTCTCTCCACTTTGTTCTAAAGTTTAAGTTGATAGGCTACTATAGAATTTAGTTTACTTCCTGAATTTTTAAATTTGCGTTTAACAAGTCTTTTAACCTTTAGAAAATAACTAATAGATTTTTAAAGTTACTTTCGATAACCATTTAGGTTTTGAAAATTAATATAAGTTTTTTTTTTTATCTATTTTGAAACATATCTTCAAAATTCAAAGTCCTTTGAATCTTGAAAATTAATTTTTTTAAAAAAAAACTTATTTTGTGCTTTTGGATTAAAAAGGATGAAAACCATGTAAAAGAAGGATGAGAAAACACCCACCATTTTTAAAAAGTTGAAAATTAAATGAAATCCATACAAAACTTGAACTAAACTTTTAATTTCGTTGTCTGATAAATTCTTAAACTTTAAAGTGTCTACTAGTTAGGTTCTTAAATTTTGAACGTTGGGTATGATATACTAGATTTTTTAAAAAAGATATTATGAACCTATTTAGAAGTTTTAATAGACACTTTTAAAGTTTAGGGATTTATCATTTAAAAGTTTATCGATGTATTAGAAAGTTTGAGATTTATTTCAATCACATGGTTAATTTTTTTGTGCAGAAATTTGATGATGGGCATGGGACGGGATGGCAATGTGTGGTGGGTTCAAATTTTGGGAGCTTTTTCACTCATTCTAAAGGGACTTTCATCTACTTCACTTTGGAGACTCTCAACTTTCTTATCTTCAAAGGGGCTTCTTCTCATTCTCTCTCAAACTAA

mRNA sequence

ATGCTGGAAGGGAAGGCTTTGATTGATGATACAGACATGCCTCTCAAATTGCAGATCCAAGCCATGAAAGCTGCTTCTGAAGCTCTCGATCTCTATGATGTTTTTGACTGTAAATCCATTGCTGCCCACATCAAGAAGTTTGAGATTTATTTCAATCACATGGTTAATTTTTTTGTGCAGAAATTTGATGATGGGCATGGGACGGGATGGCAATGTGTGGTGGGTTCAAATTTTGGGAGCTTTTTCACTCATTCTAAAGGGACTTTCATCTACTTCACTTTGGAGACTCTCAACTTTCTTATCTTCAAAGGGGCTTCTTCTCATTCTCTCTCAAACTAA

Coding sequence (CDS)

ATGCTGGAAGGGAAGGCTTTGATTGATGATACAGACATGCCTCTCAAATTGCAGATCCAAGCCATGAAAGCTGCTTCTGAAGCTCTCGATCTCTATGATGTTTTTGACTGTAAATCCATTGCTGCCCACATCAAGAAGTTTGAGATTTATTTCAATCACATGGTTAATTTTTTTGTGCAGAAATTTGATGATGGGCATGGGACGGGATGGCAATGTGTGGTGGGTTCAAATTTTGGGAGCTTTTTCACTCATTCTAAAGGGACTTTCATCTACTTCACTTTGGAGACTCTCAACTTTCTTATCTTCAAAGGGGCTTCTTCTCATTCTCTCTCAAACTAA

Protein sequence

MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQKFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFKGASSHSLSN

Homology

[Close]

BLAST of Spg024801 vs. NCBI nr
Match: KAG6581892.1 (Dynein light chain 1, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018326.1 Dynein light chain 1, cytoplasmic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-37
Identity = 87/106 (82.08%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           MLEGKALI DTDMPLKLQIQAMKAASEALDLYDVFD KSIAAHIKK              
Sbjct: 1   MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFKGAS 107
           KFDDGHG GWQCVVGSNFGSFFTHS+GTFIYFTLETLNFLIFKG S
Sbjct: 61  KFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPS 92

[Close]

BLAST of Spg024801 vs. NCBI nr
Match: XP_022955724.1 (dynein light chain 1, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-37
Identity = 87/106 (82.08%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           MLEGKALI DTDMPLKLQIQAMKAASEALDLYDVFD KSIAAHIKK              
Sbjct: 1   MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFKGAS 107
           KFDDGHG GWQCVVGSNFGSFFTHS+GTFIYFTLETLNFLIFKG S
Sbjct: 61  KFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPS 92

[Close]

BLAST of Spg024801 vs. NCBI nr
Match: XP_023529016.1 (dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.2 bits (417), Expect = 3.2e-37
Identity = 86/106 (81.13%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           MLEGKALI DTDMPLKLQIQAMKAASEALDLYDV+D KSIAAHIKK              
Sbjct: 1   MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVYDSKSIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFKGAS 107
           KFDDGHG GWQCVVGSNFGSFFTHS+GTFIYFTLETLNFLIFKG S
Sbjct: 61  KFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPS 92

[Close]

BLAST of Spg024801 vs. NCBI nr
Match: KAG6780462.1 (hypothetical protein POTOM_013322 [Populus tomentosa] >KAG6782179.1 hypothetical protein POTOM_011571 [Populus tomentosa])

HSP 1 Score: 158.3 bits (399), Expect = 3.9e-35
Identity = 81/107 (75.70%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           MLEGKALI+DTDMPLK+QIQAM +AS+ALDLYDV DCKS+A+HIKK          F  Q
Sbjct: 1   MLEGKALIEDTDMPLKMQIQAMASASQALDLYDVLDCKSVASHIKKI---------FHDQ 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFKGASS 108
           +FD  +G GWQCVVGSNFG FFTHSKGTFIYFTLETLNFLIFKGASS
Sbjct: 61  EFDLRYGGGWQCVVGSNFGCFFTHSKGTFIYFTLETLNFLIFKGASS 98

[Close]

BLAST of Spg024801 vs. NCBI nr
Match: XP_027926174.1 (probable dynein light chain [Vigna unguiculata] >QCE08963.1 dynein light chain LC8-type [Vigna unguiculata])

HSP 1 Score: 157.5 bits (397), Expect = 6.6e-35
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           MLEGKA+I+DTDMPLK+QIQAM +ASEALDLYDV DC SIAAHIKK              
Sbjct: 1   MLEGKAVIEDTDMPLKMQIQAMASASEALDLYDVLDCTSIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFKGASSH 109
           +FD  HG+GWQCVVGS+FG FFTHSKGTF+YFTLETLNFLIFKGAS H
Sbjct: 61  EFDTKHGSGWQCVVGSSFGCFFTHSKGTFVYFTLETLNFLIFKGASDH 94

[Close]

BLAST of Spg024801 vs. ExPASy Swiss-Prot
Match: P61285 (Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-10
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           M + KA+I + DM  ++Q  +++ A++AL+ Y++   K IAAHIKK              
Sbjct: 1   MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFK 104
           +FD  +   W C+VG NFGS+ TH    FIYF L  +  L+FK
Sbjct: 61  EFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Spg024801 vs. ExPASy Swiss-Prot
Match: P63167 (Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-10
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           M + KA+I + DM  ++Q  +++ A++AL+ Y++   K IAAHIKK              
Sbjct: 1   MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFK 104
           +FD  +   W C+VG NFGS+ TH    FIYF L  +  L+FK
Sbjct: 61  EFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Spg024801 vs. ExPASy Swiss-Prot
Match: P61273 (Dynein light chain 1, cytoplasmic OS=Macaca fascicularis OX=9541 GN=DYNLL1 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-10
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           M + KA+I + DM  ++Q  +++ A++AL+ Y++   K IAAHIKK              
Sbjct: 1   MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFK 104
           +FD  +   W C+VG NFGS+ TH    FIYF L  +  L+FK
Sbjct: 61  EFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Spg024801 vs. ExPASy Swiss-Prot
Match: P63168 (Dynein light chain 1, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-10
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           M + KA+I + DM  ++Q  +++ A++AL+ Y++   K IAAHIKK              
Sbjct: 1   MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFK 104
           +FD  +   W C+VG NFGS+ TH    FIYF L  +  L+FK
Sbjct: 61  EFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Spg024801 vs. ExPASy Swiss-Prot
Match: P63169 (Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus OX=9986 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-10
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           M + KA+I + DM  ++Q  +++ A++AL+ Y++   K IAAHIKK              
Sbjct: 1   MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFK 104
           +FD  +   W C+VG NFGS+ TH    FIYF L  +  L+FK
Sbjct: 61  EFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Spg024801 vs. ExPASy TrEMBL
Match: A0A6J1GX40 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111457636 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.9e-38
Identity = 87/106 (82.08%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           MLEGKALI DTDMPLKLQIQAMKAASEALDLYDVFD KSIAAHIKK              
Sbjct: 1   MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFKGAS 107
           KFDDGHG GWQCVVGSNFGSFFTHS+GTFIYFTLETLNFLIFKG S
Sbjct: 61  KFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPS 92

[Close]

BLAST of Spg024801 vs. ExPASy TrEMBL
Match: A0A4D6N583 (Dynein light chain OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g182 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.2e-35
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           MLEGKA+I+DTDMPLK+QIQAM +ASEALDLYDV DC SIAAHIKK              
Sbjct: 1   MLEGKAVIEDTDMPLKMQIQAMASASEALDLYDVLDCTSIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFKGASSH 109
           +FD  HG+GWQCVVGS+FG FFTHSKGTF+YFTLETLNFLIFKGAS H
Sbjct: 61  EFDTKHGSGWQCVVGSSFGCFFTHSKGTFVYFTLETLNFLIFKGASDH 94

[Close]

BLAST of Spg024801 vs. ExPASy TrEMBL
Match: A0A7J0GB86 (Dynein light chain OS=Actinidia rufa OX=165716 GN=Acr_19g0009910 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.2e-35
Identity = 81/111 (72.97%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           MLEGK L++DTDMPLK+QIQAM AAS+ALDLYDV DCKSIAAHIKK              
Sbjct: 1   MLEGKGLVEDTDMPLKMQIQAMAAASQALDLYDVLDCKSIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFKGASSHSLS 112
           +FD  +G GWQCVVGSNFG FFTH+KGTFIYFTLETLNFLIFKGASS S S
Sbjct: 61  EFDKRYGNGWQCVVGSNFGCFFTHTKGTFIYFTLETLNFLIFKGASSPSSS 97

[Close]

BLAST of Spg024801 vs. ExPASy TrEMBL
Match: A0A2R6PUY2 (Dynein light chain OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc26920 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.1e-35
Identity = 80/109 (73.39%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           MLEGK L++DTDMPLK+QIQAM AAS+ALDLYDV DCKSIAAHIKK              
Sbjct: 1   MLEGKGLVEDTDMPLKIQIQAMAAASKALDLYDVLDCKSIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFKGASSHS 110
           +FD  +G GWQCVVGSNFG FFTH+KGTFIYFTLETLNFLIFKGASS S
Sbjct: 61  EFDKRYGNGWQCVVGSNFGCFFTHTKGTFIYFTLETLNFLIFKGASSPS 95

[Close]

BLAST of Spg024801 vs. ExPASy TrEMBL
Match: W9RUV7 (Dynein light chain OS=Morus notabilis OX=981085 GN=L484_026208 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.1e-35
Identity = 80/111 (72.07%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           MLEGKALI+DTDMP+K+QIQAM AAS+ALD+YDVFDC+SIAAHIKK              
Sbjct: 1   MLEGKALIEDTDMPVKMQIQAMAAASQALDIYDVFDCRSIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFKGASSHSLS 112
           +FD  +G GWQCVVGSNFG FFTHSKGTFIYFTLETL+FLIFKGA+S S S
Sbjct: 61  EFDKRYGPGWQCVVGSNFGCFFTHSKGTFIYFTLETLSFLIFKGATSSSSS 97

[Close]

BLAST of Spg024801 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 146.4 bits (368), Expect = 1.4e-35
Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           MLEGKA+++D+DMP+K+Q+QAM  AS+ALDL+DVFDCKSIA HIKK              
Sbjct: 1   MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFKGASS 108
           +FD+ +G+GWQCVVGSNFG FFTHSKGTFIYF LETL FLIFKGAS+
Sbjct: 61  EFDERYGSGWQCVVGSNFGCFFTHSKGTFIYFQLETLKFLIFKGAST 93

[Close]

BLAST of Spg024801 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 137.9 bits (346), Expect = 5.0e-33
Identity = 69/106 (65.09%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           MLEGKA +++TDMP+K+Q+QAMK AS++LDL+DVFD  SIAAHIKK              
Sbjct: 1   MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFKGAS 107
           +FD+ +G+GWQCVVG+NFG FFTHSKGTFIYF L TLNFLIFKGA+
Sbjct: 61  EFDERYGSGWQCVVGTNFGCFFTHSKGTFIYFHLGTLNFLIFKGAT 92

[Close]

BLAST of Spg024801 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 90.9 bits (224), Expect = 7.1e-19
Identity = 47/105 (44.76%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 1   MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
           MLEGKA++ DTDM   ++  A+  AS+ALD +DV +   IA  IKK              
Sbjct: 1   MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKK-------------- 60

Query: 61  KFDDGHGTGWQCVVGSNFGSFFTHSKGTFIYFTLETLNFLIFKGA 106
           +FD  +G+GWQC+VG++FGSF TH  G FI+F++ +L  L+FKG+
Sbjct: 61  EFDRSYGSGWQCIVGTHFGSFVTHCSGCFIHFSVGSLTILLFKGS 91

[Close]

BLAST of Spg024801 vs. TAIR 10
Match: AT1G52240.1 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 88.6 bits (218), Expect = 3.5e-18
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 1  MLEGKALIDDTDMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQ 60
          MLEGKA+++D+DMP+K+Q+QAM  AS+ALDL+DVFDCKSIA HIKK              
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKK-------------- 59

Query: 61 KFDDGHGTGWQCV 74
          +FD+ +G+GWQCV
Sbjct: 61 EFDERYGSGWQCV 59

[Close]

BLAST of Spg024801 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-13
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 12  DMPLKLQIQAMKAASEALDLYDVFDCKSIAAHIKKFEIYFNHMVNFFVQKFDDGHGTGWQ 71
           DMP  +Q  A + A   LD  + F  K +A ++KK              +FD G+G  W 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKK--------------EFDKGYGPAWH 182

Query: 72  CVVGSNFGSFFTHSKGTFIYFTLETLNFLIFK 104
           C+VGS+FGSF THS G FIYF+++ L  L+FK
Sbjct: 183 CIVGSSFGSFVTHSTGCFIYFSMDKLYVLLFK 200

The following BLAST results are available for this feature:

BLAST of Spg024801 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581892.1	1.4e-37	82.08	Dynein light chain 1, cytoplasmic, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022955724.1	1.4e-37	82.08	dynein light chain 1, cytoplasmic-like [Cucurbita moschata]	[more]
XP_023529016.1	3.2e-37	81.13	dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6780462.1	3.9e-35	75.70	hypothetical protein POTOM_013322 [Populus tomentosa] >KAG6782179.1 hypothetical...	[more]
XP_027926174.1	6.6e-35	73.15	probable dynein light chain [Vigna unguiculata] >QCE08963.1 dynein light chain L...	[more]

BLAST of Spg024801 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P61285	2.0e-10	37.86	Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1	[more]
P63167	2.0e-10	37.86	Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1	[more]
P61273	2.0e-10	37.86	Dynein light chain 1, cytoplasmic OS=Macaca fascicularis OX=9541 GN=DYNLL1 PE=3 ...	[more]
P63168	2.0e-10	37.86	Dynein light chain 1, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll1 PE=1 SV=1	[more]
P63169	2.0e-10	37.86	Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus OX=9986 GN=DYNLL1 PE=...	[more]

BLAST of Spg024801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GX40	6.9e-38	82.08	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111457636 PE=3 SV=1	[more]
A0A4D6N583	3.2e-35	73.15	Dynein light chain OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g182 PE=3 SV=1	[more]
A0A7J0GB86	4.2e-35	72.97	Dynein light chain OS=Actinidia rufa OX=165716 GN=Acr_19g0009910 PE=3 SV=1	[more]
A0A2R6PUY2	7.1e-35	73.39	Dynein light chain OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc...	[more]
W9RUV7	7.1e-35	72.07	Dynein light chain OS=Morus notabilis OX=981085 GN=L484_026208 PE=3 SV=1	[more]

BLAST of Spg024801 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52240.2	1.4e-35	67.29	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	5.0e-33	65.09	Dynein light chain type 1 family protein	[more]
AT4G27360.1	7.1e-19	44.76	Dynein light chain type 1 family protein	[more]
AT1G52240.1	3.5e-18	57.53	RHO guanyl-nucleotide exchange factor 11	[more]
AT5G20110.1	4.4e-13	41.30	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..104 e-value: 5.5E-32 score: 122.3
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 6..103 e-value: 1.0E-21 score: 77.1
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..106
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..104 e-value: 1.7E-25 score: 90.8
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..104
None	No IPR available	PANTHER	PTHR11886:SF78	DYNEIN LIGHT CHAIN	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024801.1	Spg024801.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding