Spg024495 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024495
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposable element Tf2
Location	scaffold12: 15649960 .. 15655405 (+)
RNA-Seq Expression	Spg024495
Synteny	Spg024495

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAAAGTAGAGGCAGAGCCTCCTCCTCAAGGGGCAGTCGCCCATCTTCTTCTTCCACAGCACCTCCACCTATGAGTGCTGACCAATACGCTATGGATTTAGGGTTTACTACGGTAACCCAATCCAGATCTAGGCAAGGCGGAATACGCCCTATGCCCCCAATGGAGTCATCAACTCCACCTCCAAGGCCTTCGGCCAACCTCGTCCGTCCTTCAGGCGGAATCATTCAATTGAGACCTCCTGTCTCTCCTTCTTCAGCAATAGGATCATCGATCCCGTCCTCTTCAACATACTCTGCGGCTGTAACGCCTGAAAAGAGGTTTGTACCTCGCCCAGAGATCAAAGGTTACTTTCAAAAATCGCAGGTTATCTATGAACCCATCATAGAGCCTGAATTTCAGGGTCTCAACCTAGAAGAGACCATTTCAAACATGTATCCTACAGGTTTCAATTTCATGCCTGAGGATTTAAACAAAACAAGAACCTTCTATGAGTTTATCCTAGTTGACACCAAGTCAGCTGAGATAACCCATATTCCTGACAAAAACGATCCCTCTAAGATCGCTTATTCAAAACTAAAGATCTTCAAAGCCTTGAATCCAACCCACTGGAATCAAGGATTATATACAGACAAATCATTTTCAAAACCCTTTGTTCCACAAACATATTCATATCGGGACTACGTTAGAGCCTGGTATAATATGATGTGGTATTCACCCTCCAAACATTCTTGGTTCATTTCTTTCTGCCAGAATGCTTACAAAATCACATTCCCATTGTGGTTCATTCAATGGTGGAATACATTCGGTCTTACGAATGATATTTTGCCTACTCCCTTGCAAGAGTCATATTATCATTTTGCAAGGAATATTCAAAAAACAGCATTTCATAACTCTATGAGATTCTGTTTATATTTCCAAATTCCTTGGATATTTTGCTGGAACTTCTCAACCAGCAACCAACCTCAGTACAAAACCGTCACGAAGATCCTAAAGATCAAATGGTGGGACAAATTCAATTTCCAGAACGCCACCCTTAATAAGGTAAAGGAGTGGTTCGCAGCCAATGGTTATCTTCAAGATATCGACATAAAGAGGAACGCAGAGTTTCTCAATGACAAATCAAAGCTCTTAGCAGCTCTTGCACAGACGACATCTGATGCAGACTTCCAAAGGATTCTACAGATGGCGGCTTCAGATAGAAGCGCATCCCCAGCTTCTTCTGCACAAGGAGAAGAAGAAAATGAAGATCCGGATTACGATCTGGACGACCCGTTTCTCGACTCACAACCTATGTGAGCTCCGAGCCAAATGATTCTGTTTCACAAAGAAGCAGTCAGCATAAACCTGGAATACTTCGAAAGGAAGTAATTCCATCAAATTAATTTTTTTAAAAAAAAAAGTGTTGTAAATTCTCACCCTTTAGTCTAAAGAGGTGTAAACTCTGTAAATAATCTAGTTTACACTGTAAATACATTTCTGCTAAAGCACAGCTTTAGAAGATGAAGCAGCAGAGCAATCAAGACAAAAGAATGCTATATCCTGAAAGCAAAGATTGTTAGCAACTTTCCTAGATCGTGAGGACCTAGTTTGGCGTTTTCCGGCAGATGATGATGTAAGACCGGGTTTAGCCTGTAATCAACCTAGGGTGATCGAGGGTTAGGATTGGAGCTAATAATTCAGCCTACAAGATATGGAATCTTATCTTCTGAAAAGAGATAAAGCTGAAGCATCTTCAACAGTTGTAAAGTAGTAGACGTGAAATCTTATCTTTTCTTTTATCTTTATGTCTAGTCTATCCGGTCAGGGGTCCTGTCCTGTCGGCTTAATAATTTAGTTTTACTTTTTCAATTTTTCGTTTTTACTTTTTCAAAAGACGAATCTATCAGGGGTCCTGTCCTGACGATTCGATCTTATCTTTTAATTTTCCGCATTCAATTATCATTTGAATTCCGGGGTCTATATAAGACTTCCAAGTTGTATTTCAAAGGCATGCTCTGAGACTTCTCAAGCTATCTTCACTTGTAAAGCTTGAATCTCACCTTGCTTTCTGTAATCAGCTAGTCGATCCTTGATAGGGAGTCACAAGCTGTTCCAATTTTGTATCAGAGCCAAATAAATCCAATACAATTTCTCAATTTTGTTGATTTCAAATTTTTCTGGGGGGAGAAGGGATTCTATTCCAGAAAAACCAATCCTCTTAAATTCATTCCATAATCTTTAAAGTTAAAACCTATCTTCGACGAAGAGATCGTCAGAAGCTATTTACGTTCATCTACTCCGAAGGACTGTTGCGAAGGACTGTTGCGGTTGGTGGTCCCGGTCGTAAGACGCAAAGAAGAGCGCAGTGAATCCGTTGGTCAGCCTACCTTGCCTTCTTGCCAAAAGAGTAAGTGAAGGTATATATCTTTTGATCTTCAACTCAGAGAAAATAGTTTTCAATTTCAAAGTTTATTGTTTGAATTTTTGAAAATGTTTTTCTTTAATTAATCCATGTCTCTCTTAAAGAAAATTTTGTTCAAAACTCTTCCTTCAAAACCAGCTTCCTCTAAGGAGCTAACTCAAAATGAAATTGAGGACCAGCATATGGCCTCATCAGGCTCTGACATCTCTAATGAAGCTTTGCATATAGCAAAGATCGAAAACAACCTTCAAGCCTGGGGTCTACCCAAACTTGACAACAAAACAATCTATATGCATAATACGTTCAATTTCAAAGAGCAACACTGCATCAAGATTGTTGAACGCAAAATTCCAGTCTATGGGAATATTGATTCAATTCAATTATTTCCAAAAGACGATATCCTCAAGCACCGAAAGGATTTTCAGTTCCTTCATATAGGAGCAGTTCAAGTCGCTCTCCGTCCAATGTTCAGAATGGGTCTCGACACTCCTGTTCTTGCAATCCTGAGAGATAGACGTCACAAAGACTTCTCTAACTCTCTTCTTGGAATCATCGAGTCCAATCTTGCCGATGGTCCAGTCTATTTCAATTGTTTCCCAAACTTTATGGTGGCCCTTGATGACCCCCATATTCTCAAGACCTTAACTCTGGAGGTTACAGGTCAAGGTTTGAATCTTGAAGAAGGTGTCAAGAAGATGACACTGTTATACAAGATCACCTACAAAACTCTTACCTCTTCAATGGAACCAAAAGCACTGGTCCAATCCCCAAAGGGAAAAACCATGCTGATCGAAACAAACATCAATAAATCCTCTGTAAGTGTCCCAAAGATGCTTTCATGGGATAACCTCACAAGAAATCCTAGATGGACAATCGAAAATGCTTTTGTCCCGAATAAGAAAGAAAAAGAACTTTCCCATATTATCGAACATCCAGATGGGAGAGTAGAAATCAAATTTGAGGATGAAGAACCTCGTTTCCCAGTGGTCAAAGAAAACATGAACAAAAAGGAGTTTATGAGTTCTAGACCAAGTACCTCTGGCATTAGGCCAGAATCTCTTCAAAGTATTGGCAGAACTAGCTCACTCAGAGTTAAGTCTGTAAGACTAGAACACGGAGTTCCAAATCTCCAATATGAAGAAGAAAGACCTCCTTCTCCAACCCAAACCGATATGGAAACCGAATCAGTTTTCAAAAGCCAACTGAACGTTATCATTGCTGATAACGAATTCAAAGTTGACAAAGAAGCTCTGCAAACGGAGTTTATGGCCAAAGAAAACAGAGAAGAAAGAAAACGCTTCTTTAAGACTCACTCTGAAGAACAGAGAAAAGTTATTAAAGAAGAATACTTTCAAACTCTTGAAAAGCTTCAAGAACATATTTCCTTTTTCAGATGGTTCAATCAGAGAAAAGAATATTCTCACATATGCGCCATAAGAGAAAAAGAAAAATGGAAAACAATGAGGCGAGGAGAAGTTCAAGGAAACTTCCCTCCAATGGAAGATGTTGAGTTCGACAGTTTTTACCATGAAAAAATTGTCGCAAAACCCTTTCAACTCATTAGAGAAGCTGAAGAGGCTCAACCTCCTACCAATAAAGAAATCAAAAGCATTCAGGTCCAAAACAATTTCTCGAACCGAATGCTAACCTTCATAGCTGAACAAGTTTACCGGCTAGAGGAATTAATCGATCCTCCTCCAGCACCTATCAAACCCATGTTCAGCCCTCTTGAACAAGTCAATCTCAGGACGCCAAAGACTAAACTCTTGGAAGAGATTGATAGAAAGCTTTCTGCCATAGCAAGAGGAGAAAGCTCAAGTCAGATAAATGTTTTGAATGATAGTGACAGTGATGAAACTGATTCTATTATTGAACAATTATCTGGCCTCCAAATTGAAGAGCCTCAATCCCTTAGGCCCCGTTTGATAACCATTTGGTTTTTTGTTTTTGGTTTTTGAAAATTAAGCTTAAAAACACTACTCCTACACATAAGTTTCTTGATTTTGTTACCTACCTTCTTCTTATGTTTTCAAAAACCAAGCCGAATTTTGAAAACTAAAAAAAGTAGTTTCCAAAAACTTGTTTTTGTTTTTAGAATTTAGCTAGGAAGTTAAATGTGTCATTGATAAAGATGCAAACCATGATAAGAAAATTGGGAAAAAACAAGCATAACTTTCAAAAACCAAAAACCAAAAACCAAATGGTTATCAAACGGGGCCTTAACAAACTGGGTTATCTAAAACCAGGAGATCGTGTGAACTGGTATCAAAGACCCTCGATGCCAGACCTCAATTACGAACAAAGTCACAAGTTCGTCAAAACCAAACAATTTGACGGTCAATCTATTGTTGTTTGGAACCTTGATGGAAAGTCCGATAGACAGATTCAAGATATGCTGTCAGAAATGCTCATAGCATCAACAGCATACCAAGAAAATGGGAATTCAAACCATGTAGCCTGTGTAACCTTAATCAATGGTTTTACAGGTGTCCTTAAGGCATGGTGGGACTGCCTCAGTACTTCTCTCAAATTAGAAATCAAGCTACATACTACAAAGGTCAAGAGAAAAAGAGAGATTTCTGATACAAAGGCAGACCCAGGTATAAGGATAGGTGGAGAACCTATCACTAAACCTGAAACCTCTAAAACCCCTCCAAAGGTAGTTGTCATAGAAGAAGAGGTAGACCAGCAAGATGCCGTTGAGGCATTAATTTATGCTATCTCTTGGGCCTTCACAACTGCTCACAATGTGAAGCATGACGATACCCAAAGAACCATTCTCAAAAACCTCAGGTACAAAAATCTTGCTAACTTCAATTGGTACAAAGACATGTACCGATTCCTCAGTTTTGTTATCTCTTATCTCTTTTTTGAGATTGTTGATATCAAATTGCAAGTCTTGAATTGAAGAGGGTTGAATATCAGACTTTTGTTTAAACAAATCATTTCTTTGTAGGATCTCAGAAAGGGTAGAATGTTTTACCTCAATTTTTTCTTTGGCGTAATCAGAGGTACTTGGAGAAGACAAAGATTGCTTAA

mRNA sequence

ATGAGTGAAAGTAGAGGCAGAGCCTCCTCCTCAAGGGGCAGTCGCCCATCTTCTTCTTCCACAGCACCTCCACCTATGAGTGCTGACCAATACGCTATGGATTTAGGGTTTACTACGGTAACCCAATCCAGATCTAGGCAAGGCGGAATACGCCCTATGCCCCCAATGGAGTCATCAACTCCACCTCCAAGGCCTTCGGCCAACCTCGTCCGTCCTTCAGGCGGAATCATTCAATTGAGACCTCCTGTCTCTCCTTCTTCAGCAATAGGATCATCGATCCCGTCCTCTTCAACATACTCTGCGGCTGTAACGCCTGAAAAGAGGTTTGTACCTCGCCCAGAGATCAAAGGTTACTTTCAAAAATCGCAGGTTATCTATGAACCCATCATAGAGCCTGAATTTCAGGGTCTCAACCTAGAAGAGACCATTTCAAACATGTATCCTACAGGTTTCAATTTCATGCCTGAGGATTTAAACAAAACAAGAACCTTCTATGAGTTTATCCTAGTTGACACCAAGTCAGCTGAGATAACCCATATTCCTGACAAAAACGATCCCTCTAAGATCGCTTATTCAAAACTAAAGATCTTCAAAGCCTTGAATCCAACCCACTGGAATCAAGGATTATATACAGACAAATCATTTTCAAAACCCTTTGTTCCACAAACATATTCATATCGGGACTACGTTAGAGCCTGGTATAATATGATGTGGTATTCACCCTCCAAACATTCTTGGTTCATTTCTTTCTGCCAGAATGCTTACAAAATCACATTCCCATTGTGGTTCATTCAATGGTGGAATACATTCGGTCTTACGAATGATATTTTGCCTACTCCCTTGCAAGAGTCATATTATCATTTTGCAAGGAATATTCAAAAAACAGCATTTCATAACTCTATGAGATTCTGTTTATATTTCCAAATTCCTTGGATATTTTGCTGGAACTTCTCAACCAGCAACCAACCTCAGTACAAAACCGTCACGAAGATCCTAAAGATCAAATGGTGGGACAAATTCAATTTCCAGAACGCCACCCTTAATAAGGTAAAGGAGTGGTTCGCAGCCAATGGTTATCTTCAAGATATCGACATAAAGAGGAACGCAGAGTTTCTCAATGACAAATCAAAGCTCTTAGCAGCTCTTGCACAGACGACATCTGATGCAGACTTCCAAAGGATTCTACAGATGGCGGCTTCAGATAGAAGCGCATCCCCAGCTTCTTCTGCACAAGGAGAAGAAGAAAATGAAGATCCGGATTACGATCTGGACGACCCGTTTCTCGACTCACAACCTATCCTACAAGATATGGAATCTTATCTTCTGAAAAGAGATAAAGCTGAAGCATCTTCAACAGTTTTAAAACCTATCTTCGACGAAGAGATCGTCAGAAGCTATTTACGTTCATCTACTCCGAAGGACTGTTGCGAAGGACTGTTGCGGTTGGTGGTCCCGGTCGTAAGACGCAAAGAAGAGCGCAGTGAATCCGTTGGTCAGCCTACCTTGCCTTCTTGCCAAAAGACTTCCTCTAAGGAGCTAACTCAAAATGAAATTGAGGACCAGCATATGGCCTCATCAGGCTCTGACATCTCTAATGAAGCTTTGCATATAGCAAAGATCGAAAACAACCTTCAAGCCTGGGGTCTACCCAAACTTGACAACAAAACAATCTATATGCATAATACGTTCAATTTCAAAGAGCAACACTGCATCAAGATTGTTGAACGCAAAATTCCAGTCTATGGGAATATTGATTCAATTCAATTATTTCCAAAAGACGATATCCTCAAGCACCGAAAGGATTTTCAGTTCCTTCATATAGGAGCAGTTCAAGTCGCTCTCCGTCCAATGTTCAGAATGGCACTGGTCCAATCCCCAAAGGGAAAAACCATGCTGATCGAAACAAACATCAATAAATCCTCTGTAAGTGTCCCAAAGATGCTTTCATGGGATAACCTCACAAGAAATCCTAGATGGACAATCGAAAATGCTTTTGTCCCGAATAAGAAAGAAAAAGAACTTTCCCATATTATCGAACATCCAGATGGGAGAGTAGAAATCAAATTTGAGGATGAAGAACCTCGTTTCCCAGTGGTCAAAGAAAACATGAACAAAAAGGAGTTTATGAGTTCTAGACCAAGTACCTCTGGCATTAGGCCAGAATCTCTTCAAAGTATTGGCAGAACTAGCTCACTCAGAGTTAAGTCTGTAAGACTAGAACACGGAGTTCCAAATCTCCAATATGAAGAAGAAAGACCTCCTTCTCCAACCCAAACCGATATGGAAACCGAATCAGTTTTCAAAAGCCAACTGAACGTTATCATTGCTGATAACGAATTCAAAGTTGACAAAGAAGCTCTGCAAACGGAGTTTATGGCCAAAGAAAACAGAGAAGAAAGAAAACGCTTCTTTAAGACTCACTCTGAAGAACAGAGAAAAGTTATTAAAGAAGAATACTTTCAAACTCTTGAAAAGCTTCAAGAACATATTTCCTTTTTCAGATGGTTCAATCAGAGAAAAGAATATTCTCACATATGCGCCATAAGAGAAAAAGAAAAATGGAAAACAATGAGGCGAGGAGAAGTTCAAGGAAACTTCCCTCCAATGGAAGATGTTGAGTTCGACAGTTTTTACCATGAAAAAATTGTCGCAAAACCCTTTCAACTCATTAGAGAAGCTGAAGAGGCTCAACCTCCTACCAATAAAGAAATCAAAAGCATTCAGGTCCAAAACAATTTCTCGAACCGAATGCTAACCTTCATAGCTGAACAAGTTTACCGGCTAGAGGAATTAATCGATCCTCCTCCAGCACCTATCAAACCCATGTTCAGCCCTCTTGAACAAGTCAATCTCAGGACGCCAAAGACTAAACTCTTGGAAGAGATTGATAGAAAGCTTTCTGCCATAGCAAGAGGAGAAAGCTCAAGTCAGATAAATGTTTTGAATGATAGTGACAGTGATGAAACTGATTCTATTATTGAACAATTATCTGGCCTCCAAATTGAAGAGCCTCAATCCCTTAGGCCCCGAGATCGTGTGAACTGGTATCAAAGACCCTCGATGCCAGACCTCAATTACGAACAAAGTCACAAGTTCGTCAAAACCAAACAATTTGACGGTCAATCTATTGTTGTTTGGAACCTTGATGGAAAGTCCGATAGACAGATTCAAGATATGCTGTCAGAAATGCTCATAGCATCAACAGCATACCAAGAAAATGGGAATTCAAACCATGTAGCCTGTGTAACCTTAATCAATGGTTTTACAGGTGTCCTTAAGGCATGGTGGGACTGCCTCAGTACTTCTCTCAAATTAGAAATCAAGCTACATACTACAAAGGTCAAGAGAAAAAGAGAGATTTCTGATACAAAGGCAGACCCAGGTATAAGGATAGGTGGAGAACCTATCACTAAACCTGAAACCTCTAAAACCCCTCCAAAGGTAGTTGTCATAGAAGAAGAGGTAGACCAGCAAGATGCCGTTGAGGCATTAATTTATGCTATCTCTTGGGCCTTCACAACTGCTCACAATGTGAAGCATGACGATACCCAAAGAACCATTCTCAAAAACCTCAGGTACTTGGAGAAGACAAAGATTGCTTAA

Coding sequence (CDS)

ATGAGTGAAAGTAGAGGCAGAGCCTCCTCCTCAAGGGGCAGTCGCCCATCTTCTTCTTCCACAGCACCTCCACCTATGAGTGCTGACCAATACGCTATGGATTTAGGGTTTACTACGGTAACCCAATCCAGATCTAGGCAAGGCGGAATACGCCCTATGCCCCCAATGGAGTCATCAACTCCACCTCCAAGGCCTTCGGCCAACCTCGTCCGTCCTTCAGGCGGAATCATTCAATTGAGACCTCCTGTCTCTCCTTCTTCAGCAATAGGATCATCGATCCCGTCCTCTTCAACATACTCTGCGGCTGTAACGCCTGAAAAGAGGTTTGTACCTCGCCCAGAGATCAAAGGTTACTTTCAAAAATCGCAGGTTATCTATGAACCCATCATAGAGCCTGAATTTCAGGGTCTCAACCTAGAAGAGACCATTTCAAACATGTATCCTACAGGTTTCAATTTCATGCCTGAGGATTTAAACAAAACAAGAACCTTCTATGAGTTTATCCTAGTTGACACCAAGTCAGCTGAGATAACCCATATTCCTGACAAAAACGATCCCTCTAAGATCGCTTATTCAAAACTAAAGATCTTCAAAGCCTTGAATCCAACCCACTGGAATCAAGGATTATATACAGACAAATCATTTTCAAAACCCTTTGTTCCACAAACATATTCATATCGGGACTACGTTAGAGCCTGGTATAATATGATGTGGTATTCACCCTCCAAACATTCTTGGTTCATTTCTTTCTGCCAGAATGCTTACAAAATCACATTCCCATTGTGGTTCATTCAATGGTGGAATACATTCGGTCTTACGAATGATATTTTGCCTACTCCCTTGCAAGAGTCATATTATCATTTTGCAAGGAATATTCAAAAAACAGCATTTCATAACTCTATGAGATTCTGTTTATATTTCCAAATTCCTTGGATATTTTGCTGGAACTTCTCAACCAGCAACCAACCTCAGTACAAAACCGTCACGAAGATCCTAAAGATCAAATGGTGGGACAAATTCAATTTCCAGAACGCCACCCTTAATAAGGTAAAGGAGTGGTTCGCAGCCAATGGTTATCTTCAAGATATCGACATAAAGAGGAACGCAGAGTTTCTCAATGACAAATCAAAGCTCTTAGCAGCTCTTGCACAGACGACATCTGATGCAGACTTCCAAAGGATTCTACAGATGGCGGCTTCAGATAGAAGCGCATCCCCAGCTTCTTCTGCACAAGGAGAAGAAGAAAATGAAGATCCGGATTACGATCTGGACGACCCGTTTCTCGACTCACAACCTATCCTACAAGATATGGAATCTTATCTTCTGAAAAGAGATAAAGCTGAAGCATCTTCAACAGTTTTAAAACCTATCTTCGACGAAGAGATCGTCAGAAGCTATTTACGTTCATCTACTCCGAAGGACTGTTGCGAAGGACTGTTGCGGTTGGTGGTCCCGGTCGTAAGACGCAAAGAAGAGCGCAGTGAATCCGTTGGTCAGCCTACCTTGCCTTCTTGCCAAAAGACTTCCTCTAAGGAGCTAACTCAAAATGAAATTGAGGACCAGCATATGGCCTCATCAGGCTCTGACATCTCTAATGAAGCTTTGCATATAGCAAAGATCGAAAACAACCTTCAAGCCTGGGGTCTACCCAAACTTGACAACAAAACAATCTATATGCATAATACGTTCAATTTCAAAGAGCAACACTGCATCAAGATTGTTGAACGCAAAATTCCAGTCTATGGGAATATTGATTCAATTCAATTATTTCCAAAAGACGATATCCTCAAGCACCGAAAGGATTTTCAGTTCCTTCATATAGGAGCAGTTCAAGTCGCTCTCCGTCCAATGTTCAGAATGGCACTGGTCCAATCCCCAAAGGGAAAAACCATGCTGATCGAAACAAACATCAATAAATCCTCTGTAAGTGTCCCAAAGATGCTTTCATGGGATAACCTCACAAGAAATCCTAGATGGACAATCGAAAATGCTTTTGTCCCGAATAAGAAAGAAAAAGAACTTTCCCATATTATCGAACATCCAGATGGGAGAGTAGAAATCAAATTTGAGGATGAAGAACCTCGTTTCCCAGTGGTCAAAGAAAACATGAACAAAAAGGAGTTTATGAGTTCTAGACCAAGTACCTCTGGCATTAGGCCAGAATCTCTTCAAAGTATTGGCAGAACTAGCTCACTCAGAGTTAAGTCTGTAAGACTAGAACACGGAGTTCCAAATCTCCAATATGAAGAAGAAAGACCTCCTTCTCCAACCCAAACCGATATGGAAACCGAATCAGTTTTCAAAAGCCAACTGAACGTTATCATTGCTGATAACGAATTCAAAGTTGACAAAGAAGCTCTGCAAACGGAGTTTATGGCCAAAGAAAACAGAGAAGAAAGAAAACGCTTCTTTAAGACTCACTCTGAAGAACAGAGAAAAGTTATTAAAGAAGAATACTTTCAAACTCTTGAAAAGCTTCAAGAACATATTTCCTTTTTCAGATGGTTCAATCAGAGAAAAGAATATTCTCACATATGCGCCATAAGAGAAAAAGAAAAATGGAAAACAATGAGGCGAGGAGAAGTTCAAGGAAACTTCCCTCCAATGGAAGATGTTGAGTTCGACAGTTTTTACCATGAAAAAATTGTCGCAAAACCCTTTCAACTCATTAGAGAAGCTGAAGAGGCTCAACCTCCTACCAATAAAGAAATCAAAAGCATTCAGGTCCAAAACAATTTCTCGAACCGAATGCTAACCTTCATAGCTGAACAAGTTTACCGGCTAGAGGAATTAATCGATCCTCCTCCAGCACCTATCAAACCCATGTTCAGCCCTCTTGAACAAGTCAATCTCAGGACGCCAAAGACTAAACTCTTGGAAGAGATTGATAGAAAGCTTTCTGCCATAGCAAGAGGAGAAAGCTCAAGTCAGATAAATGTTTTGAATGATAGTGACAGTGATGAAACTGATTCTATTATTGAACAATTATCTGGCCTCCAAATTGAAGAGCCTCAATCCCTTAGGCCCCGAGATCGTGTGAACTGGTATCAAAGACCCTCGATGCCAGACCTCAATTACGAACAAAGTCACAAGTTCGTCAAAACCAAACAATTTGACGGTCAATCTATTGTTGTTTGGAACCTTGATGGAAAGTCCGATAGACAGATTCAAGATATGCTGTCAGAAATGCTCATAGCATCAACAGCATACCAAGAAAATGGGAATTCAAACCATGTAGCCTGTGTAACCTTAATCAATGGTTTTACAGGTGTCCTTAAGGCATGGTGGGACTGCCTCAGTACTTCTCTCAAATTAGAAATCAAGCTACATACTACAAAGGTCAAGAGAAAAAGAGAGATTTCTGATACAAAGGCAGACCCAGGTATAAGGATAGGTGGAGAACCTATCACTAAACCTGAAACCTCTAAAACCCCTCCAAAGGTAGTTGTCATAGAAGAAGAGGTAGACCAGCAAGATGCCGTTGAGGCATTAATTTATGCTATCTCTTGGGCCTTCACAACTGCTCACAATGTGAAGCATGACGATACCCAAAGAACCATTCTCAAAAACCTCAGGTACTTGGAGAAGACAAAGATTGCTTAA

Protein sequence

MSESRGRASSSRGSRPSSSSTAPPPMSADQYAMDLGFTTVTQSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGIIQLRPPVSPSSAIGSSIPSSSTYSAAVTPEKRFVPRPEIKGYFQKSQVIYEPIIEPEFQGLNLEETISNMYPTGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKLKIFKALNPTHWNQGLYTDKSFSKPFVPQTYSYRDYVRAWYNMMWYSPSKHSWFISFCQNAYKITFPLWFIQWWNTFGLTNDILPTPLQESYYHFARNIQKTAFHNSMRFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASDRSASPASSAQGEEENEDPDYDLDDPFLDSQPILQDMESYLLKRDKAEASSTVLKPIFDEEIVRSYLRSSTPKDCCEGLLRLVVPVVRRKEERSESVGQPTLPSCQKTSSKELTQNEIEDQHMASSGSDISNEALHIAKIENNLQAWGLPKLDNKTIYMHNTFNFKEQHCIKIVERKIPVYGNIDSIQLFPKDDILKHRKDFQFLHIGAVQVALRPMFRMALVQSPKGKTMLIETNINKSSVSVPKMLSWDNLTRNPRWTIENAFVPNKKEKELSHIIEHPDGRVEIKFEDEEPRFPVVKENMNKKEFMSSRPSTSGIRPESLQSIGRTSSLRVKSVRLEHGVPNLQYEEERPPSPTQTDMETESVFKSQLNVIIADNEFKVDKEALQTEFMAKENREERKRFFKTHSEEQRKVIKEEYFQTLEKLQEHISFFRWFNQRKEYSHICAIREKEKWKTMRRGEVQGNFPPMEDVEFDSFYHEKIVAKPFQLIREAEEAQPPTNKEIKSIQVQNNFSNRMLTFIAEQVYRLEELIDPPPAPIKPMFSPLEQVNLRTPKTKLLEEIDRKLSAIARGESSSQINVLNDSDSDETDSIIEQLSGLQIEEPQSLRPRDRVNWYQRPSMPDLNYEQSHKFVKTKQFDGQSIVVWNLDGKSDRQIQDMLSEMLIASTAYQENGNSNHVACVTLINGFTGVLKAWWDCLSTSLKLEIKLHTTKVKRKREISDTKADPGIRIGGEPITKPETSKTPPKVVVIEEEVDQQDAVEALIYAISWAFTTAHNVKHDDTQRTILKNLRYLEKTKIA

Homology

[Close]

BLAST of Spg024495 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 377.1 bits (967), Expect = 5.7e-100
Identity = 197/422 (46.68%), Postives = 276/422 (65.40%), Query Frame = 0


Query: 26  MSADQYAMDLGFTTVTQSRSRQGGIRPMPPM--ESSTPPPRPSANLVRPSGGIIQLRPPV 85
           MSA+ YAMDL F  V  SR RQG  +    +  +SS+ PP PS  L+RPSG     +   
Sbjct: 1   MSAENYAMDLQFEQV--SRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAA 60

Query: 86  SP-SSAIGSSIP-SSSTYSAAVTPEKRFVPRPEIKGYFQKSQVIYEPIIEPEFQGLNLEE 145
           SP +S+  S+IP + S+YS  V P K F PRP I GYF K+ ++ +  IEPEF G +++E
Sbjct: 61  SPAASSSRSAIPRNPSSYSQIVRP-KIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQE 120

Query: 146 TISNMYPTGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKLKIFKALN 205
             S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSKL+IF+ L 
Sbjct: 121 VCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT 180

Query: 206 PTHWNQGLYTDKSFSKPFVPQTYSYRDYVRAWYNMMWYSPSKHSWFISFCQNAYKITFPL 265
           P++W QG++  + FS PF P +Y+YRDY +AWY + W     HSWF++FC+ AYK+ FP 
Sbjct: 181 PSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPN 240

Query: 266 WFIQWWNTFGLTNDILPTPLQESYYHFARNIQKTAFHNSMRFCLYFQIPWIFCWNFSTSN 325
           WF  WW  FGL+ +I P  +Q SY+ F ++I  +    + RF LYFQIPWIFCWNF    
Sbjct: 241 WFQNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGP 300

Query: 326 QPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAA 385
              +K ++K L+IKWW+KFN+ +  +NK+K+WF AN +LQD+  + +  FL  K+ +++ 
Sbjct: 301 SGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMST 360

Query: 386 LAQTTSDADFQRILQMAASDRS---------ASPASSAQGEEENEDP--DYDLDDPFLDS 433
           LA  ++  +F  ++     + S          SPAS    ++ + DP    D++DPFLD+
Sbjct: 361 LAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNADDFDYDPYEGLDINDPFLDT 418

[Close]

BLAST of Spg024495 vs. NCBI nr
Match: KAA0032923.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 377.1 bits (967), Expect = 5.7e-100
Identity = 198/422 (46.92%), Postives = 275/422 (65.17%), Query Frame = 0


Query: 26  MSADQYAMDLGFTTVTQSRSRQGGIRPMPPM--ESSTPPPRPSANLVRPSGGIIQLRPPV 85
           MSA+ YAMDL F  V  SR RQG  +    +  +SS+ PP PS  L+RPSG         
Sbjct: 1   MSAENYAMDLQFEQV--SRRRQGSAQRTLTIQSDSSSLPPIPSTELLRPSGPTTSNMRAA 60

Query: 86  SP-SSAIGSSIP-SSSTYSAAVTPEKRFVPRPEIKGYFQKSQVIYEPIIEPEFQGLNLEE 145
           SP +S+  S+IP + S+YS  V P K F PRP I GYF K+ ++ +  IEPEF G +++E
Sbjct: 61  SPDASSSRSAIPRNPSSYSQIVRP-KIFQPRPPINGYFTKTTIV-DLTIEPEFDGPSVQE 120

Query: 146 TISNMYPTGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKLKIFKALN 205
             S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSKL+IF+ L 
Sbjct: 121 VCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT 180

Query: 206 PTHWNQGLYTDKSFSKPFVPQTYSYRDYVRAWYNMMWYSPSKHSWFISFCQNAYKITFPL 265
           P++W QG++  + FS PF P +Y+YRDY +AWY + W     HSWF++FC+ AYK+ FP 
Sbjct: 181 PSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKMHFPN 240

Query: 266 WFIQWWNTFGLTNDILPTPLQESYYHFARNIQKTAFHNSMRFCLYFQIPWIFCWNFSTSN 325
           WF  WW  FGL+ +I P  +Q SY+ F ++I  +    + RF LYFQIPWIFCWNF    
Sbjct: 241 WFQNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGP 300

Query: 326 QPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAA 385
              +K ++K L IKWW+KFN+ +  +NK+K+WF AN +LQD+  + +  FL  K+ +++ 
Sbjct: 301 SGNFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMST 360

Query: 386 LAQTTSDADFQRILQMAASDRS---------ASPASSAQGEEENEDP--DYDLDDPFLDS 433
           LA  ++  +F  ++     + S         ASPAS    ++ + DP    D++DPFLD+
Sbjct: 361 LAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYVGLDINDPFLDT 418

[Close]

BLAST of Spg024495 vs. NCBI nr
Match: TYK28077.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 376.3 bits (965), Expect = 9.7e-100
Identity = 198/422 (46.92%), Postives = 275/422 (65.17%), Query Frame = 0


Query: 26  MSADQYAMDLGFTTVTQSRSRQGGIRPMPPM--ESSTPPPRPSANLVRPSGGIIQLRPPV 85
           MSA+ YAMDL F  V  SR RQG  +    +  +SS+ PP PS  L+RPSG         
Sbjct: 1   MSAENYAMDLQFEQV--SRRRQGSAQRTLTIQSDSSSLPPIPSTELLRPSGPTTSNMRAA 60

Query: 86  SP-SSAIGSSIP-SSSTYSAAVTPEKRFVPRPEIKGYFQKSQVIYEPIIEPEFQGLNLEE 145
           SP +S+  S+IP + S+YS  V P K F PRP I GYF K+ ++ +  IEPEF G +++E
Sbjct: 61  SPDASSSRSAIPRNPSSYSQIVRP-KIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQE 120

Query: 146 TISNMYPTGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKLKIFKALN 205
             S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSKL+IF+ L 
Sbjct: 121 VCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT 180

Query: 206 PTHWNQGLYTDKSFSKPFVPQTYSYRDYVRAWYNMMWYSPSKHSWFISFCQNAYKITFPL 265
           P++W QG++  + FS PF P +Y+YRDY +AWY + W     HSWF++FC+ AYK+ FP 
Sbjct: 181 PSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKMHFPN 240

Query: 266 WFIQWWNTFGLTNDILPTPLQESYYHFARNIQKTAFHNSMRFCLYFQIPWIFCWNFSTSN 325
           WF  WW  FGL+ +I P  +Q SY+ F ++I  +    + RF LYFQIPWIFCWNF    
Sbjct: 241 WFQNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGP 300

Query: 326 QPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAA 385
              +K ++K L IKWW+KFN+ +  +NK+K+WF AN +LQD+  + +  FL  K+ +++ 
Sbjct: 301 SGNFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMST 360

Query: 386 LAQTTSDADFQRILQMAASDRS---------ASPASSAQGEEENEDP--DYDLDDPFLDS 433
           LA  ++  +F  ++     + S         ASPAS    ++ + DP    D++DPFLD+
Sbjct: 361 LAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYEGLDINDPFLDT 418

[Close]

BLAST of Spg024495 vs. NCBI nr
Match: KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 375.9 bits (964), Expect = 1.3e-99
Identity = 197/422 (46.68%), Postives = 276/422 (65.40%), Query Frame = 0


Query: 26  MSADQYAMDLGFTTVTQSRSRQGGIRPMPPM--ESSTPPPRPSANLVRPSGGIIQLRPPV 85
           MSA+ YAMDL F  V  SR RQG  +    +  +SS+ PP PS  L+RPSG     +   
Sbjct: 1   MSAENYAMDLQFEQV--SRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAA 60

Query: 86  SP-SSAIGSSIP-SSSTYSAAVTPEKRFVPRPEIKGYFQKSQVIYEPIIEPEFQGLNLEE 145
           SP +S+  S+IP + S+YS  V P K F PRP I GYF K+ ++ +  IEPEF G +++E
Sbjct: 61  SPAASSSRSAIPRNPSSYSQIVRP-KIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQE 120

Query: 146 TISNMYPTGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKLKIFKALN 205
             S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSKL+IF+ L 
Sbjct: 121 VCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT 180

Query: 206 PTHWNQGLYTDKSFSKPFVPQTYSYRDYVRAWYNMMWYSPSKHSWFISFCQNAYKITFPL 265
           P++W QG++  + FS PF P +Y+YRDY +AWY + W     HSWF++FC+ AYK+ FP 
Sbjct: 181 PSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPN 240

Query: 266 WFIQWWNTFGLTNDILPTPLQESYYHFARNIQKTAFHNSMRFCLYFQIPWIFCWNFSTSN 325
           WF  WW  FGL+ +I P  +Q SY+ F ++I  +    + RF LYFQIPWIFCWNF    
Sbjct: 241 WFQNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGP 300

Query: 326 QPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAA 385
              +K ++K L+IKWW+KFN+ +  +NK+K+WF AN +LQD+  + +  FL  K+ +++ 
Sbjct: 301 SGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMST 360

Query: 386 LAQTTSDADFQRILQMAASDRS---------ASPASSAQGEEENEDP--DYDLDDPFLDS 433
           LA  ++  +F  ++     + S          SPAS    ++ + DP    D++DPFLD+
Sbjct: 361 LAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDFDYDPYEGLDINDPFLDT 418

[Close]

BLAST of Spg024495 vs. NCBI nr
Match: KAA0050443.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 374.4 bits (960), Expect = 3.7e-99
Identity = 203/444 (45.72%), Postives = 286/444 (64.41%), Query Frame = 0


Query: 4   SRGRASSSRGSRPSSSSTAPPPMSADQYAMDLGFTTVTQSRSRQGGIRPMPPM--ESSTP 63
           S    + S+G +PS+ S+AP  MSA+ YAMDL F  V  SR  QG  +    +  +SS+ 
Sbjct: 34  SSSETTPSKG-KPSTQSSAPSLMSAENYAMDLQFEQV--SRRHQGSAQRTLTIQSDSSSL 93

Query: 64  PPRPSANLVRPSGGIIQLRPPVSP-SSAIGSSIP-SSSTYSAAVTPEKRFVPRPEIKGYF 123
           PP PS  L+RPSG     +   SP +S+  S+IP + S+YS  V P K F PRP I GYF
Sbjct: 94  PPIPSTALLRPSGPTTPNKRAASPTASSSRSAIPRNPSSYSQIVRP-KVFQPRPSINGYF 153

Query: 124 QKSQVIYEPIIEPEFQGLNLEETISNMYPTGFNFMPEDLNKTRTFYEFILVDTKSAEITH 183
            K+ ++ +  IEPEF G ++ E  + ++P  FNF+PEDL KT TFYE+ILVD+KSAEITH
Sbjct: 154 TKTTMV-DLTIEPEFDGPSVHEVCNQIFPHEFNFLPEDLTKTMTFYEYILVDSKSAEITH 213

Query: 184 IPDKNDPSKIAYSKLKIFKALNPTHWNQGLYTDKSFSKPFVPQTYSYRDYVRAWYNMMWY 243
           +PDKNDPSKI YSKL+IF+ L P++W QG++  + FS PF P +Y+YRDY +AWY + W 
Sbjct: 214 VPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWL 273

Query: 244 SPSKHSWFISFCQNAYKITFPLWFIQWWNTFGLTNDILPTPLQESYYHFARNIQKTAFHN 303
               HSWF++FC+ AYK+ FP WF  WW  FGL+ +I P  +Q SY+ F ++I  +    
Sbjct: 274 QAYNHSWFMTFCKQAYKMHFPNWFQNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSK 333

Query: 304 SMRFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGY 363
           + RF LYFQIPWIFCWNF       +K ++K L+IKWW+KFN+ +  +NK+K+WF AN +
Sbjct: 334 TFRFALYFQIPWIFCWNFQLGPSENFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIH 393

Query: 364 LQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASDRS---------ASPASSA 423
           LQD+  + +  FL  K+ +++ LA  ++  +F  ++     +RS         ASPAS  
Sbjct: 394 LQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNYVVNNVVVNRSDDNDDLPEDASPASVN 453

Query: 424 QGEEENEDP--DYDLDDPFLDSQP 433
             ++ + DP    D++DPFLD+QP
Sbjct: 454 DVDDLDYDPYEGLDINDPFLDTQP 472

[Close]

BLAST of Spg024495 vs. ExPASy TrEMBL
Match: A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 2.7e-100
Identity = 197/422 (46.68%), Postives = 276/422 (65.40%), Query Frame = 0


Query: 26  MSADQYAMDLGFTTVTQSRSRQGGIRPMPPM--ESSTPPPRPSANLVRPSGGIIQLRPPV 85
           MSA+ YAMDL F  V  SR RQG  +    +  +SS+ PP PS  L+RPSG     +   
Sbjct: 1   MSAENYAMDLQFEQV--SRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAA 60

Query: 86  SP-SSAIGSSIP-SSSTYSAAVTPEKRFVPRPEIKGYFQKSQVIYEPIIEPEFQGLNLEE 145
           SP +S+  S+IP + S+YS  V P K F PRP I GYF K+ ++ +  IEPEF G +++E
Sbjct: 61  SPAASSSRSAIPRNPSSYSQIVRP-KIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQE 120

Query: 146 TISNMYPTGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKLKIFKALN 205
             S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSKL+IF+ L 
Sbjct: 121 VCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT 180

Query: 206 PTHWNQGLYTDKSFSKPFVPQTYSYRDYVRAWYNMMWYSPSKHSWFISFCQNAYKITFPL 265
           P++W QG++  + FS PF P +Y+YRDY +AWY + W     HSWF++FC+ AYK+ FP 
Sbjct: 181 PSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPN 240

Query: 266 WFIQWWNTFGLTNDILPTPLQESYYHFARNIQKTAFHNSMRFCLYFQIPWIFCWNFSTSN 325
           WF  WW  FGL+ +I P  +Q SY+ F ++I  +    + RF LYFQIPWIFCWNF    
Sbjct: 241 WFQNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGP 300

Query: 326 QPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAA 385
              +K ++K L+IKWW+KFN+ +  +NK+K+WF AN +LQD+  + +  FL  K+ +++ 
Sbjct: 301 SGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMST 360

Query: 386 LAQTTSDADFQRILQMAASDRS---------ASPASSAQGEEENEDP--DYDLDDPFLDS 433
           LA  ++  +F  ++     + S          SPAS    ++ + DP    D++DPFLD+
Sbjct: 361 LAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNADDFDYDPYEGLDINDPFLDT 418

[Close]

BLAST of Spg024495 vs. ExPASy TrEMBL
Match: A0A5A7SR64 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 2.7e-100
Identity = 198/422 (46.92%), Postives = 275/422 (65.17%), Query Frame = 0


Query: 26  MSADQYAMDLGFTTVTQSRSRQGGIRPMPPM--ESSTPPPRPSANLVRPSGGIIQLRPPV 85
           MSA+ YAMDL F  V  SR RQG  +    +  +SS+ PP PS  L+RPSG         
Sbjct: 1   MSAENYAMDLQFEQV--SRRRQGSAQRTLTIQSDSSSLPPIPSTELLRPSGPTTSNMRAA 60

Query: 86  SP-SSAIGSSIP-SSSTYSAAVTPEKRFVPRPEIKGYFQKSQVIYEPIIEPEFQGLNLEE 145
           SP +S+  S+IP + S+YS  V P K F PRP I GYF K+ ++ +  IEPEF G +++E
Sbjct: 61  SPDASSSRSAIPRNPSSYSQIVRP-KIFQPRPPINGYFTKTTIV-DLTIEPEFDGPSVQE 120

Query: 146 TISNMYPTGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKLKIFKALN 205
             S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSKL+IF+ L 
Sbjct: 121 VCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT 180

Query: 206 PTHWNQGLYTDKSFSKPFVPQTYSYRDYVRAWYNMMWYSPSKHSWFISFCQNAYKITFPL 265
           P++W QG++  + FS PF P +Y+YRDY +AWY + W     HSWF++FC+ AYK+ FP 
Sbjct: 181 PSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKMHFPN 240

Query: 266 WFIQWWNTFGLTNDILPTPLQESYYHFARNIQKTAFHNSMRFCLYFQIPWIFCWNFSTSN 325
           WF  WW  FGL+ +I P  +Q SY+ F ++I  +    + RF LYFQIPWIFCWNF    
Sbjct: 241 WFQNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGP 300

Query: 326 QPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAA 385
              +K ++K L IKWW+KFN+ +  +NK+K+WF AN +LQD+  + +  FL  K+ +++ 
Sbjct: 301 SGNFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMST 360

Query: 386 LAQTTSDADFQRILQMAASDRS---------ASPASSAQGEEENEDP--DYDLDDPFLDS 433
           LA  ++  +F  ++     + S         ASPAS    ++ + DP    D++DPFLD+
Sbjct: 361 LAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYVGLDINDPFLDT 418

[Close]

BLAST of Spg024495 vs. ExPASy TrEMBL
Match: A0A5D3DW87 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 4.7e-100
Identity = 198/422 (46.92%), Postives = 275/422 (65.17%), Query Frame = 0


Query: 26  MSADQYAMDLGFTTVTQSRSRQGGIRPMPPM--ESSTPPPRPSANLVRPSGGIIQLRPPV 85
           MSA+ YAMDL F  V  SR RQG  +    +  +SS+ PP PS  L+RPSG         
Sbjct: 1   MSAENYAMDLQFEQV--SRRRQGSAQRTLTIQSDSSSLPPIPSTELLRPSGPTTSNMRAA 60

Query: 86  SP-SSAIGSSIP-SSSTYSAAVTPEKRFVPRPEIKGYFQKSQVIYEPIIEPEFQGLNLEE 145
           SP +S+  S+IP + S+YS  V P K F PRP I GYF K+ ++ +  IEPEF G +++E
Sbjct: 61  SPDASSSRSAIPRNPSSYSQIVRP-KIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQE 120

Query: 146 TISNMYPTGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKLKIFKALN 205
             S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSKL+IF+ L 
Sbjct: 121 VCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT 180

Query: 206 PTHWNQGLYTDKSFSKPFVPQTYSYRDYVRAWYNMMWYSPSKHSWFISFCQNAYKITFPL 265
           P++W QG++  + FS PF P +Y+YRDY +AWY + W     HSWF++FC+ AYK+ FP 
Sbjct: 181 PSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKMHFPN 240

Query: 266 WFIQWWNTFGLTNDILPTPLQESYYHFARNIQKTAFHNSMRFCLYFQIPWIFCWNFSTSN 325
           WF  WW  FGL+ +I P  +Q SY+ F ++I  +    + RF LYFQIPWIFCWNF    
Sbjct: 241 WFQNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGP 300

Query: 326 QPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAA 385
              +K ++K L IKWW+KFN+ +  +NK+K+WF AN +LQD+  + +  FL  K+ +++ 
Sbjct: 301 SGNFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMST 360

Query: 386 LAQTTSDADFQRILQMAASDRS---------ASPASSAQGEEENEDP--DYDLDDPFLDS 433
           LA  ++  +F  ++     + S         ASPAS    ++ + DP    D++DPFLD+
Sbjct: 361 LAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYEGLDINDPFLDT 418

[Close]

BLAST of Spg024495 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 6.1e-100
Identity = 197/422 (46.68%), Postives = 276/422 (65.40%), Query Frame = 0


Query: 26  MSADQYAMDLGFTTVTQSRSRQGGIRPMPPM--ESSTPPPRPSANLVRPSGGIIQLRPPV 85
           MSA+ YAMDL F  V  SR RQG  +    +  +SS+ PP PS  L+RPSG     +   
Sbjct: 1   MSAENYAMDLQFEQV--SRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAA 60

Query: 86  SP-SSAIGSSIP-SSSTYSAAVTPEKRFVPRPEIKGYFQKSQVIYEPIIEPEFQGLNLEE 145
           SP +S+  S+IP + S+YS  V P K F PRP I GYF K+ ++ +  IEPEF G +++E
Sbjct: 61  SPAASSSRSAIPRNPSSYSQIVRP-KIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQE 120

Query: 146 TISNMYPTGFNFMPEDLNKTRTFYEFILVDTKSAEITHIPDKNDPSKIAYSKLKIFKALN 205
             S ++P GFNF+PEDL+KTRTFYE+ILVD+KSAEITH+PDKNDPSKI YSKL+IF+ L 
Sbjct: 121 VCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT 180

Query: 206 PTHWNQGLYTDKSFSKPFVPQTYSYRDYVRAWYNMMWYSPSKHSWFISFCQNAYKITFPL 265
           P++W QG++  + FS PF P +Y+YRDY +AWY + W     HSWF++FC+ AYK+ FP 
Sbjct: 181 PSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPN 240

Query: 266 WFIQWWNTFGLTNDILPTPLQESYYHFARNIQKTAFHNSMRFCLYFQIPWIFCWNFSTSN 325
           WF  WW  FGL+ +I P  +Q SY+ F ++I  +    + RF LYFQIPWIFCWNF    
Sbjct: 241 WFQNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGP 300

Query: 326 QPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAA 385
              +K ++K L+IKWW+KFN+ +  +NK+K+WF AN +LQD+  + +  FL  K+ +++ 
Sbjct: 301 SGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMST 360

Query: 386 LAQTTSDADFQRILQMAASDRS---------ASPASSAQGEEENEDP--DYDLDDPFLDS 433
           LA  ++  +F  ++     + S          SPAS    ++ + DP    D++DPFLD+
Sbjct: 361 LAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDFDYDPYEGLDINDPFLDT 418

[Close]

BLAST of Spg024495 vs. ExPASy TrEMBL
Match: A0A5A7U3G5 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.8e-99
Identity = 203/444 (45.72%), Postives = 286/444 (64.41%), Query Frame = 0


Query: 4   SRGRASSSRGSRPSSSSTAPPPMSADQYAMDLGFTTVTQSRSRQGGIRPMPPM--ESSTP 63
           S    + S+G +PS+ S+AP  MSA+ YAMDL F  V  SR  QG  +    +  +SS+ 
Sbjct: 34  SSSETTPSKG-KPSTQSSAPSLMSAENYAMDLQFEQV--SRRHQGSAQRTLTIQSDSSSL 93

Query: 64  PPRPSANLVRPSGGIIQLRPPVSP-SSAIGSSIP-SSSTYSAAVTPEKRFVPRPEIKGYF 123
           PP PS  L+RPSG     +   SP +S+  S+IP + S+YS  V P K F PRP I GYF
Sbjct: 94  PPIPSTALLRPSGPTTPNKRAASPTASSSRSAIPRNPSSYSQIVRP-KVFQPRPSINGYF 153

Query: 124 QKSQVIYEPIIEPEFQGLNLEETISNMYPTGFNFMPEDLNKTRTFYEFILVDTKSAEITH 183
            K+ ++ +  IEPEF G ++ E  + ++P  FNF+PEDL KT TFYE+ILVD+KSAEITH
Sbjct: 154 TKTTMV-DLTIEPEFDGPSVHEVCNQIFPHEFNFLPEDLTKTMTFYEYILVDSKSAEITH 213

Query: 184 IPDKNDPSKIAYSKLKIFKALNPTHWNQGLYTDKSFSKPFVPQTYSYRDYVRAWYNMMWY 243
           +PDKNDPSKI YSKL+IF+ L P++W QG++  + FS PF P +Y+YRDY +AWY + W 
Sbjct: 214 VPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWL 273

Query: 244 SPSKHSWFISFCQNAYKITFPLWFIQWWNTFGLTNDILPTPLQESYYHFARNIQKTAFHN 303
               HSWF++FC+ AYK+ FP WF  WW  FGL+ +I P  +Q SY+ F ++I  +    
Sbjct: 274 QAYNHSWFMTFCKQAYKMHFPNWFQNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSK 333

Query: 304 SMRFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGY 363
           + RF LYFQIPWIFCWNF       +K ++K L+IKWW+KFN+ +  +NK+K+WF AN +
Sbjct: 334 TFRFALYFQIPWIFCWNFQLGPSENFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIH 393

Query: 364 LQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASDRS---------ASPASSA 423
           LQD+  + +  FL  K+ +++ LA  ++  +F  ++     +RS         ASPAS  
Sbjct: 394 LQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNYVVNNVVVNRSDDNDDLPEDASPASVN 453

Query: 424 QGEEENEDP--DYDLDDPFLDSQP 433
             ++ + DP    D++DPFLD+QP
Sbjct: 454 DVDDLDYDPYEGLDINDPFLDTQP 472

The following BLAST results are available for this feature:

BLAST of Spg024495 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063832.1	5.7e-100	46.68	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0032923.1	5.7e-100	46.92	polyprotein [Cucumis melo var. makuwa]	[more]
TYK28077.1	9.7e-100	46.92	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0056777.1	1.3e-99	46.68	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran...	[more]
KAA0050443.1	3.7e-99	45.72	polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Spg024495 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg024495 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6D1	2.7e-100	46.68	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7SR64	2.7e-100	46.92	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE...	[more]
A0A5D3DW87	4.7e-100	46.92	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 P...	[more]
A0A5A7UVN1	6.1e-100	46.68	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U3G5	1.8e-99	45.72	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE...	[more]

BLAST of Spg024495 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 497..512
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 401..427
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 492..512
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1125..1145
None	No IPR available	PANTHER	PTHR46249:SF31	BNAC08G47480D PROTEIN	coord: 111..427
None	No IPR available	PANTHER	PTHR46249	FAMILY NOT NAMED	coord: 111..427

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024495.1	Spg024495.1	mRNA