Spg023934 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg023934
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionAB hydrolase-1 domain-containing protein
Locationscaffold13: 1011355 .. 1011906 (+)
RNA-Seq ExpressionSpg023934
SyntenySpg023934
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTCCTTCCTCTCCCGTTACCCATTCTCCTGTACTTCATCTCATCCTCTCTGTCGCCATTTTTGTACTCAAAAGAGGGCTGGAGCTCAACTTCAGGCTCTGCAACTTGTCGCCACGCCGCCTTTGGTTCGACAAAGACACGACAATGCAAGTTTGGACAACCAAAAAACCAAACCAAAACAAGCCCTGTCTTGTTCTGATCCATGGCTTTGATGGAAACTCCAAATGGCAATTCTTTTTCCAAGTTAGAGACTTGTCGAGAAGCTTCGACATGTACATGCCCGACTTGTTGTTCTTTGGGAATCTCAGCTCAGACCAACAAAGCCGACATGTCGGATCTGTTCCGAGCGATTTGTGTGGGGAAAGGGATGAAGAGTTGCTTGTACCAGAGACAGTACAAGATTTGAAGATGCTAATGAAGTTGTCTGTGTATAAGTATGATCTAAGGTGGAAAGAGTCGAACATCTTACCTCTTGATCTAGAGTACATGTCAATTACCGCCGAGTTATGTTCATTTTGGATGGTCAAAGAGTTTCTAAGAGTATAG

mRNA sequence

ATGTCTTCTCCTTCCTCTCCCGTTACCCATTCTCCTGTACTTCATCTCATCCTCTCTGTCGCCATTTTTGTACTCAAAAGAGGGCTGGAGCTCAACTTCAGGCTCTGCAACTTGTCGCCACGCCGCCTTTGGTTCGACAAAGACACGACAATGCAAGTTTGGACAACCAAAAAACCAAACCAAAACAAGCCCTGTCTTGTTCTGATCCATGGCTTTGATGGAAACTCCAAATGGCAATTCTTTTTCCAAGTTAGAGACTTGTCGAGAAGCTTCGACATGTACATGCCCGACTTGTTGTTCTTTGGGAATCTCAGCTCAGACCAACAAAGCCGACATGTCGGATCTGTTCCGAGCGATTTGTGTGGGGAAAGGGATGAAGAGTTGCTTGTACCAGAGACAGTACAAGATTTGAAGATGCTAATGAAGTTGTCTGTGTATAAGTATGATCTAAGGTGGAAAGAGTCGAACATCTTACCTCTTGATCTAGAGTACATGTCAATTACCGCCGAGTTATGTTCATTTTGGATGGTCAAAGAGTTTCTAAGAGTATAG

Coding sequence (CDS)

ATGTCTTCTCCTTCCTCTCCCGTTACCCATTCTCCTGTACTTCATCTCATCCTCTCTGTCGCCATTTTTGTACTCAAAAGAGGGCTGGAGCTCAACTTCAGGCTCTGCAACTTGTCGCCACGCCGCCTTTGGTTCGACAAAGACACGACAATGCAAGTTTGGACAACCAAAAAACCAAACCAAAACAAGCCCTGTCTTGTTCTGATCCATGGCTTTGATGGAAACTCCAAATGGCAATTCTTTTTCCAAGTTAGAGACTTGTCGAGAAGCTTCGACATGTACATGCCCGACTTGTTGTTCTTTGGGAATCTCAGCTCAGACCAACAAAGCCGACATGTCGGATCTGTTCCGAGCGATTTGTGTGGGGAAAGGGATGAAGAGTTGCTTGTACCAGAGACAGTACAAGATTTGAAGATGCTAATGAAGTTGTCTGTGTATAAGTATGATCTAAGGTGGAAAGAGTCGAACATCTTACCTCTTGATCTAGAGTACATGTCAATTACCGCCGAGTTATGTTCATTTTGGATGGTCAAAGAGTTTCTAAGAGTATAG

Protein sequence

MSSPSSPVTHSPVLHLILSVAIFVLKRGLELNFRLCNLSPRRLWFDKDTTMQVWTTKKPNQNKPCLVLIHGFDGNSKWQFFFQVRDLSRSFDMYMPDLLFFGNLSSDQQSRHVGSVPSDLCGERDEELLVPETVQDLKMLMKLSVYKYDLRWKESNILPLDLEYMSITAELCSFWMVKEFLRV
Homology
BLAST of Spg023934 vs. NCBI nr
Match: GEZ18225.1 (alpha/beta hydrolase fold-1 [Tanacetum cinerariifolium])

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-18
Identity = 56/147 (38.10%), Postives = 83/147 (56.46%), Query Frame = 0

Query: 8   VTHSPVLHLILSVAIFVLKRGLELNFRLCNLSPRRLWF-DKDTTMQVWTTKKPNQNKPCL 67
           ++  P+ ++I    +      L + FR C L+   +   D  TTM  W +K     KP L
Sbjct: 11  ISLQPLYNIITRFPVVFADALLSVYFRYCGLARSSVHIDDNQTTMYFWGSKHREYKKPNL 70

Query: 68  VLIHGFDGNSKWQFFFQVRDLSRSFDMYMPDLLFFGNLSSDQQSRHVGSVPSDLCGERDE 127
           VLIHGF GNSKWQF  Q+R L+R F++Y+PDL+FFG   S +  R               
Sbjct: 71  VLIHGFGGNSKWQFLLQIRQLARDFNVYVPDLVFFGESYSSKSDR-----------RNVV 130

Query: 128 ELLVPETVQDLKMLMKLSVYKYDL-RW 153
           +LLV +T +DL+ML ++S++KYD+ +W
Sbjct: 131 DLLVAKTPEDLRMLCRISIHKYDIGKW 146

BLAST of Spg023934 vs. NCBI nr
Match: GAV82710.1 (Abhydrolase_6 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 99.8 bits (247), Expect = 2.7e-17
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 0

Query: 11  SPVLHLILSVAIFVLKRGLELNFRLCNLSPRRLWFDKDTTMQVWTTKKPNQNKPCLVLIH 70
           S +L+L  ++++ V+ + L L F+ C+LSP  +  D  TTM  W+T     NKP LV++H
Sbjct: 26  SGLLYLNRTLSVLVMDKFLSLYFKSCDLSPCTIDLDNQTTMHFWSTNHRRFNKPILVMLH 85

Query: 71  GFDGNSKWQFFFQVRDLSRSFDMYMPDLLFFG 103
           G+  NSKWQF +QV  LSRSF++Y+PDLLFFG
Sbjct: 86  GYGSNSKWQFLYQVNSLSRSFNLYVPDLLFFG 117

BLAST of Spg023934 vs. NCBI nr
Match: KAG5229030.1 (pimeloyl-[acyl-carrier protein] methyl ester esterase [Salix suchowensis])

HSP 1 Score: 98.2 bits (243), Expect = 7.8e-17
Identity = 65/196 (33.16%), Postives = 89/196 (45.41%), Query Frame = 0

Query: 29  LELNFRLCNLSPRRLWFDKDTTMQVWTTKKPNQNKPCLVLIHGFDGNSKWQFFFQVRDLS 88
           + L FRLC LSP  +  D  TTM  WT+     NKP LV+IHG+ G+++WQF +QV  LS
Sbjct: 51  ISLYFRLCGLSPFTVDLDDQTTMHFWTSNHRRFNKPNLVMIHGYGGDARWQFVYQVGSLS 110

Query: 89  RSFDMYMPDLLFFGNLSSDQQSR------------------------------HVGSVPS 148
           R+F++Y+PDLLFFG  SS +  R                               V    +
Sbjct: 111 RNFNLYVPDLLFFGQSSSKRSGRTDAFQARCLAECLKRFGVDKFSVYSISYGGFVAYRMA 170

Query: 149 DLCGERDE----------------------------ELLVPETVQDLKMLMKLSVYK-YD 166
           ++C E  E                            E+L+P+  QDL++L+ LSVYK   
Sbjct: 171 EICPEEVEKVVIVSSGVGCSDDQIEEQIKKIGRDPAEILLPKNPQDLRLLVNLSVYKCKP 230

BLAST of Spg023934 vs. NCBI nr
Match: XP_038889078.1 (LOW QUALITY PROTEIN: lipase 1-like [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-16
Identity = 62/149 (41.61%), Postives = 72/149 (48.32%), Query Frame = 0

Query: 62  NKPCLVLIHGFDGNSKWQFFFQVRDLSRSFDMYMPDLLFFG-------NLSSDQQSRHVG 121
           NKPCLVLIHGF GNSKWQ FFQVRDLSRSF +Y+PDLLFFG       ++S   Q+  VG
Sbjct: 53  NKPCLVLIHGFGGNSKWQIFFQVRDLSRSFHLYIPDLLFFGESHTNKTDMSDLFQAICVG 112

Query: 122 S--------------------------------------VPSDLCGERDE---------- 153
                                                  V   +C   D+          
Sbjct: 113 GMNEKTGCGEXYSVVGISYGGYVAYRMXVIYEEVMKVVIVSCGICSNDDQKVEQLKNIGR 172

BLAST of Spg023934 vs. NCBI nr
Match: KAF9867335.1 (hypothetical protein H0E87_026171 [Populus deltoides])

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-16
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 0

Query: 29  LELNFRLCNLSPRRLWFDKDTTMQVWTTKKPNQNKPCLVLIHGFDGNSKWQFFFQVRDLS 88
           + L FRLC LSP  +  D  TTM  WT+     NKP LV+IHG+ G+++WQF +QVR LS
Sbjct: 45  ISLYFRLCGLSPFTIDLDDQTTMHFWTSNHRRFNKPNLVMIHGYGGDARWQFVYQVRSLS 104

Query: 89  RSFDMYMPDLLFFGNLSSDQQSR 112
           ++F++Y+PDLLFFG  SS +  R
Sbjct: 105 QNFNLYVPDLLFFGKSSSKRSGR 127

BLAST of Spg023934 vs. ExPASy TrEMBL
Match: A0A6N2KHW6 (AB hydrolase-1 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS86657 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.6e-18
Identity = 63/183 (34.43%), Postives = 86/183 (46.99%), Query Frame = 0

Query: 29  LELNFRLCNLSPRRLWFDKDTTMQVWTTKKPNQNKPCLVLIHGFDGNSKWQFFFQVRDLS 88
           + L FRLC LSP  +  D  TTM  WT+     NKP LV+IHG+ G+++WQFF+QV  LS
Sbjct: 45  ISLYFRLCGLSPFTIDLDDQTTMHFWTSNHRRFNKPNLVMIHGYGGDARWQFFYQVGSLS 104

Query: 89  RSFDMYMPDLLFFGNLSSDQQSR------------------------------HVGSVPS 148
           R+F++Y+PDLLFFG  SS +  R                               V    +
Sbjct: 105 RNFNLYVPDLLFFGQSSSKRSGRTDAFQARCLAECLKRFGVDKFSVYSISYGGFVAYRMA 164

Query: 149 DLCGERDE----------------------------ELLVPETVQDLKMLMKLSVYK-YD 153
           ++C E  E                            E+L+P+  QDL++L+ LSVYK   
Sbjct: 165 EICPEEVEKVVIVSSGVGCSDDQIEEQIKKIGRDPAEILLPKNPQDLRLLVNLSVYKCKP 224

BLAST of Spg023934 vs. ExPASy TrEMBL
Match: A0A1Q3CR44 (Abhydrolase_6 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_26161 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-17
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 0

Query: 11  SPVLHLILSVAIFVLKRGLELNFRLCNLSPRRLWFDKDTTMQVWTTKKPNQNKPCLVLIH 70
           S +L+L  ++++ V+ + L L F+ C+LSP  +  D  TTM  W+T     NKP LV++H
Sbjct: 26  SGLLYLNRTLSVLVMDKFLSLYFKSCDLSPCTIDLDNQTTMHFWSTNHRRFNKPILVMLH 85

Query: 71  GFDGNSKWQFFFQVRDLSRSFDMYMPDLLFFG 103
           G+  NSKWQF +QV  LSRSF++Y+PDLLFFG
Sbjct: 86  GYGSNSKWQFLYQVNSLSRSFNLYVPDLLFFG 117

BLAST of Spg023934 vs. ExPASy TrEMBL
Match: B9GKU1 (AB hydrolase-1 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G168600 PE=4 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 0

Query: 29  LELNFRLCNLSPRRLWFDKDTTMQVWTTKKPNQNKPCLVLIHGFDGNSKWQFFFQVRDLS 88
           + L FRLC LSP  +  D  TTM  WT+     NKP LV+IHG+ G+++WQF +QVR LS
Sbjct: 45  ISLYFRLCGLSPFTIDLDDQTTMHFWTSNHRRFNKPNLVMIHGYGGDARWQFVYQVRSLS 104

Query: 89  RSFDMYMPDLLFFGNLSSDQQSR 112
           ++F++Y+PDLLFFG  SS +  R
Sbjct: 105 QNFNLYVPDLLFFGKSSSKRSGR 127

BLAST of Spg023934 vs. ExPASy TrEMBL
Match: B9S5Q5 (Abhydrolase domain containing, putative OS=Ricinus communis OX=3988 GN=RCOM_0652430 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 0

Query: 21  AIFV--LKRGLELNFRLCNLSPRRLWFDKDTTMQVWTTKKPNQNKPCLVLIHGFDGNSKW 80
           AIFV  +   L L+F LC++SP  +  D  TT+  W T +   N+P LVLIHG+ GNS+W
Sbjct: 33  AIFVTFIDAMLSLHFLLCSMSPCTIDLDDQTTLHFWVTNRRQFNRPNLVLIHGYGGNSRW 92

Query: 81  QFFFQVRDLSRSFDMYMPDLLFFGNLSSDQQSR 112
           QF  QVR LS+SF++Y+PDLLFFG+  +++  R
Sbjct: 93  QFLNQVRPLSKSFNLYIPDLLFFGDSYTNRTDR 125

BLAST of Spg023934 vs. ExPASy TrEMBL
Match: A0A5N5P4L7 (AB hydrolase-1 domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_001382 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.1e-16
Identity = 64/200 (32.00%), Postives = 89/200 (44.50%), Query Frame = 0

Query: 12  PVLHLILSVAIFVLKRGLELNFRLCNLSPRRLWFDKDTTMQVWTTKKPNQNKPCLVLIHG 71
           P+L  I+   I        L FRLC LSP  +  D  TTM  WT+     NKP LV+IHG
Sbjct: 41  PILFTIVDTVI-------SLYFRLCGLSPFTIDLDDQTTMHFWTSNHRRFNKPNLVMIHG 100

Query: 72  FDGNSKWQFFFQVRDLSRSFDMYMPDLLFFGNLSSDQQSR-------------------- 131
           + G+++WQF +QV  LS++F++Y+PDLLFFG  SS +  R                    
Sbjct: 101 YGGDARWQFVYQVGSLSQNFNLYVPDLLFFGQSSSKRSGRTDAFQARCLAECLKRFGVDK 160

Query: 132 ----------HVGSVPSDLC----------------------------GERDEELLVPET 153
                      V    +++C                            G    E+L+P+ 
Sbjct: 161 FSVYSISYGGFVAYRMAEICPQEVEKVVIVSSGVGCSDDQIEEQIKKIGRDPAEILLPKH 220

BLAST of Spg023934 vs. TAIR 10
Match: AT1G72620.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-14
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 0

Query: 36  CNLSPRRLWF-DKDTTMQVWTTKKPNQNKPCLVLIHGFDGNSKWQFFFQVRDLSRSFDMY 95
           C+L P  +   D +TT+  W +     N+P LV++HG+ GNSKWQF  QV DLS+SF+++
Sbjct: 54  CDLRPITVDLNDGETTLHFWISGHRKINRPNLVMLHGYGGNSKWQFIHQVSDLSKSFNLF 113

Query: 96  MPDLLFFGNLSSDQQSRHV 114
           +PDL+FFG   S    R +
Sbjct: 114 IPDLVFFGKSYSRNTDRTI 132

BLAST of Spg023934 vs. TAIR 10
Match: AT1G17430.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-13
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 0

Query: 36  CNLSPRRLWFDK-DTTMQVWTTKKPNQNKPCLVLIHGFDGNSKWQFFFQVRDLSRSFDMY 95
           C+L P  +  D  +TT+  W +     ++  LV++HG+ GNSKWQF  QV DLS+SF+++
Sbjct: 50  CDLRPVTVDLDDGETTVHFWISGHRRISRQNLVMLHGYGGNSKWQFVHQVSDLSKSFNLF 109

Query: 96  MPDLLFFGNLSSDQQSRHV 114
           +PDL+FFG   S  + R V
Sbjct: 110 IPDLVFFGKSYSKNRDRSV 128

BLAST of Spg023934 vs. TAIR 10
Match: AT5G21950.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-13
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 0

Query: 18  LSVAIFVLKRGLELNFRLCNLSPRRLWFDKDTTMQVW----TTKKPNQNKPCLVLIHGFD 77
           LSVA FV +  L   F    LS + L  D +TT+Q W    ++   N  KP L+L+HGF 
Sbjct: 6   LSVARFV-EALLRRRFSSAGLSLQTLSIDSETTIQFWGPPPSSSSENTQKPSLLLLHGFG 65

Query: 78  GNSKWQFFFQVRDLSRSFDMYMPDLLFFGNLSSDQQSR 112
            ++ WQ+  QV+ LS  F +Y+PDL+FFG  SS  ++R
Sbjct: 66  PSAVWQWSHQVKPLSHFFRLYVPDLVFFGGSSSSGENR 102

BLAST of Spg023934 vs. TAIR 10
Match: AT5G09430.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-11
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 0

Query: 49  TTMQVWTTKKPNQNKPCLVLIHGFDGNSKWQFFFQVRDLSRSFDMYMPDLLFFGNLSSDQ 108
           T M  W  K PN++KP L+L+HGF  N+ WQ+   +R  +  F++Y+PDLLFFG  S+ +
Sbjct: 46  TAMHCWIPKSPNRSKPNLLLLHGFGANAMWQYGEHLRAFTGRFNVYVPDLLFFGLSSTSE 105

Query: 109 QSR 112
            +R
Sbjct: 106 PNR 108

BLAST of Spg023934 vs. TAIR 10
Match: AT1G78210.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.5e-10
Identity = 32/89 (35.96%), Postives = 49/89 (55.06%), Query Frame = 0

Query: 25  LKRGLELNFRLCNLSPRRLWFDKDTTMQVWT--TKKPNQNKPCLVLIHGFDGNSKWQFFF 84
           L+R  +  F+   L P  +     T +  W   TK  ++ KP L+LIHG    + WQ++ 
Sbjct: 11  LERTYKSGFKRSGLRPVTIDLKDGTVVNFWVSKTKPESKPKPNLLLIHGLGATAIWQWYD 70

Query: 85  QVRDLSRSFDMYMPDLLFFGNLSSDQQSR 112
             R LSR F++Y+PDL+FFG  S+ +  R
Sbjct: 71  VARRLSRYFNLYIPDLVFFGGSSTTRPER 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GEZ18225.11.8e-1838.10alpha/beta hydrolase fold-1 [Tanacetum cinerariifolium][more]
GAV82710.12.7e-1748.91Abhydrolase_6 domain-containing protein [Cephalotus follicularis][more]
KAG5229030.17.8e-1733.16pimeloyl-[acyl-carrier protein] methyl ester esterase [Salix suchowensis][more]
XP_038889078.11.3e-1641.61LOW QUALITY PROTEIN: lipase 1-like [Benincasa hispida][more]
KAF9867335.12.3e-1651.81hypothetical protein H0E87_026171 [Populus deltoides][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6N2KHW67.6e-1834.43AB hydrolase-1 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOC... [more]
A0A1Q3CR441.3e-1748.91Abhydrolase_6 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CF... [more]
B9GKU11.1e-1651.81AB hydrolase-1 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR... [more]
B9S5Q52.4e-1649.46Abhydrolase domain containing, putative OS=Ricinus communis OX=3988 GN=RCOM_0652... [more]
A0A5N5P4L77.1e-1632.00AB hydrolase-1 domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_... [more]
Match NameE-valueIdentityDescription
AT1G72620.12.3e-1444.30alpha/beta-Hydrolases superfamily protein [more]
AT1G17430.12.5e-1343.04alpha/beta-Hydrolases superfamily protein [more]
AT5G21950.13.2e-1341.84alpha/beta-Hydrolases superfamily protein [more]
AT5G09430.11.8e-1144.44alpha/beta-Hydrolases superfamily protein [more]
AT1G78210.17.5e-1035.96alpha/beta-Hydrolases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029058Alpha/Beta hydrolase foldGENE3D3.40.50.1820alpha/beta hydrolasecoord: 46..142
e-value: 6.9E-7
score: 31.2
IPR029058Alpha/Beta hydrolase foldSUPERFAMILY53474alpha/beta-Hydrolasescoord: 49..104
NoneNo IPR availablePANTHERPTHR43139SI:DKEY-122A22.2coord: 17..112
NoneNo IPR availablePANTHERPTHR43139:SF37ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEINcoord: 17..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg023934.1Spg023934.1mRNA