Spg023926 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg023926
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	glycine-rich protein 5-like
Location	scaffold13: 5186093 .. 5186948 (-)
RNA-Seq Expression	Spg023926
Synteny	Spg023926

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGATAATTTACGTTGTCGTTGTTGCGTTTGTTTTCCTCGTCGTGCATGCAACTGGCCGCAACGTTTCAGGTTGTTAAACTGTCACTCAACTCAAAAGTTTAATCTCATAGATTAACATATATTTGATCTTTTGTTATTGTTTAATACTCTTGGTTTTTTTAGAATATCACACTTCATCTCATCTCAAATGTGAGATGAAGATTTGAATCTATGATTTTTTAAGTCACTAAATTATGCCCATCACTTCATACATTTGTGAGTTTAGAAATTAGCACAATATTGAACAAGTGATTATTGAATATTAATAGAGAGAAAATGATATTATAGTGTTTGTGACAAAAATATTTTTAGAAAGTGGCAAGACTTTTAGATTCTAATTAACCTTTTTTTAGCCTTTCAATTCTAAAAATTTAGGAGGCAATTAAAAGGAAAACTTCAATATCTTTTTTTTTTTTTTTCATATATTTTTCTTTCTATTGTGAATAGGAAGGGCTCCATAGGCCACCTCTTATTTTGATATTAGGTTAATAAGATTAAAAGTTTGTTTCGAATATTCTTAACACAGGGGGCGGCAAGGACGAGGACCAAACCCTAGAAATGGCAGTGGCTCCGGCAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCACGGTGGCTTCGGAGGCGGAGTTGGTGGCGTCGGCGGCATAGGTGGCGGAGTTGTGCCATTTCCTTGA

mRNA sequence

ATGGCGAAGATAATTTACGTTGTCGTTGTTGCGTTTGTTTTCCTCGTCGTGCATGCAACTGGCCGCAACGTTTCAGGGGGCGGCAAGGACGAGGACCAAACCCTAGAAATGGCAGTGGCTCCGGCAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCACGGTGGCTTCGGAGGCGGAGTTGGTGGCGTCGGCGGCATAGGTGGCGGAGTTGTGCCATTTCCTTGA

Coding sequence (CDS)

ATGGCGAAGATAATTTACGTTGTCGTTGTTGCGTTTGTTTTCCTCGTCGTGCATGCAACTGGCCGCAACGTTTCAGGGGGCGGCAAGGACGAGGACCAAACCCTAGAAATGGCAGTGGCTCCGGCAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCACGGTGGCTTCGGAGGCGGAGTTGGTGGCGTCGGCGGCATAGGTGGCGGAGTTGTGCCATTTCCTTGA

Protein sequence

MAKIIYVVVVAFVFLVVHATGRNVSGGGKDEDQTLEMAVAPAADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPFP

Homology

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BLAST of Spg023926 vs. NCBI nr
Match: XP_038906734.1 (glycine-rich protein 5-like [Benincasa hispida])

HSP 1 Score: 174.9 bits (442), Expect = 4.2e-40
Identity = 101/120 (84.17%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MAKIIYVVVVAFVFLVVHATGRNVSGGGKDED-QTLEMAVAPAADPPSSGGVDDQKNIFG 60
           MAK I++VVVAFVFL V+A GRNV  GG  ED QTLE A AP ADPPSS GVDDQKNIFG
Sbjct: 1   MAK-IFIVVVAFVFLFVNAGGRNVPAGGSKEDYQTLEQAAAPVADPPSSSGVDDQKNIFG 60

Query: 61  GVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPFP 120
           GVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGG VPFP
Sbjct: 61  GVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGFVPFP 119

[Close]

BLAST of Spg023926 vs. NCBI nr
Match: XP_022964503.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 97/121 (80.17%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MAKI-IYVVVVAFVFLVVHATGRNVSGGGK-DEDQTLEMAVAPAADPPSSGGVDDQKNIF 60
           MAKI + VVVV FV LVVHA GRNV GGG  D D  L++AVAP A  PSS  V DQKNI+
Sbjct: 1   MAKIHVVVVVVVFVLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDV-DQKNIY 60

Query: 61  GGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPF 120
           GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGGVVPF
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120

[Close]

BLAST of Spg023926 vs. NCBI nr
Match: XP_023515156.1 (glycine-rich protein 23-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 97/121 (80.17%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MAKI-IYVVVVAFVFLVVHATGRNVSGGGK-DEDQTLEMAVAPAADPPSSGGVDDQKNIF 60
           MAKI + VVVV FV LVVHA GRNV GGG  D D  ++MAVAP A  PSS  V DQKNI+
Sbjct: 1   MAKIHVVVVVVVFVLLVVHANGRNVPGGGSGDGDGMVDMAVAPVAGQPSSNDV-DQKNIY 60

Query: 61  GGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPF 120
           GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGGVVPF
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120

[Close]

BLAST of Spg023926 vs. NCBI nr
Match: XP_023000565.1 (glycine-rich protein 5-like [Cucurbita maxima])

HSP 1 Score: 158.3 bits (399), Expect = 4.1e-35
Identity = 96/121 (79.34%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MAKI-IYVVVVAFVFLVVHATGRNVSGGGK-DEDQTLEMAVAPAADPPSSGGVDDQKNIF 60
           M KI + VVVV FV LVVHA GRNV GGG  D D  L++AVAP A  PSS  V DQKNI+
Sbjct: 1   MVKIHVVVVVVVFVLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDV-DQKNIY 60

Query: 61  GGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPF 120
           GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGGVVPF
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120

[Close]

BLAST of Spg023926 vs. NCBI nr
Match: KAG7026124.1 (hypothetical protein SDJN02_12623, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-34
Identity = 92/117 (78.63%), Postives = 99/117 (84.62%), Query Frame = 0


Query: 4   IIYVVVVAFVFLVVHATGRNVSGGGK-DEDQTLEMAVAPAADPPSSGGVDDQKNIFGGVG 63
           ++ VVVV F  LVVHA GRNV GGG  D D  L++AVAP A  PSS  V DQKNI+GGVG
Sbjct: 6   VVVVVVVVFFLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDV-DQKNIYGGVG 65

Query: 64  GVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPFP 120
           G AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGGVVPFP
Sbjct: 66  GFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPFP 121

[Close]

BLAST of Spg023926 vs. ExPASy TrEMBL
Match: A0A6J1HL05 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464508 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.8e-36
Identity = 97/121 (80.17%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MAKI-IYVVVVAFVFLVVHATGRNVSGGGK-DEDQTLEMAVAPAADPPSSGGVDDQKNIF 60
           MAKI + VVVV FV LVVHA GRNV GGG  D D  L++AVAP A  PSS  V DQKNI+
Sbjct: 1   MAKIHVVVVVVVFVLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDV-DQKNIY 60

Query: 61  GGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPF 120
           GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGGVVPF
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120

[Close]

BLAST of Spg023926 vs. ExPASy TrEMBL
Match: A0A6J1KIQ3 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111494807 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.0e-35
Identity = 96/121 (79.34%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MAKI-IYVVVVAFVFLVVHATGRNVSGGGK-DEDQTLEMAVAPAADPPSSGGVDDQKNIF 60
           M KI + VVVV FV LVVHA GRNV GGG  D D  L++AVAP A  PSS  V DQKNI+
Sbjct: 1   MVKIHVVVVVVVFVLLVVHANGRNVPGGGSGDGDGMLDLAVAPVAGQPSSNDV-DQKNIY 60

Query: 61  GGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPF 120
           GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFGHGGFGGGVGGVGG+GGGVVPF
Sbjct: 61  GGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFGGGVGGVGGVGGGVVPF 120

[Close]

BLAST of Spg023926 vs. ExPASy TrEMBL
Match: A0A5D3D259 (Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001010 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.1e-33
Identity = 89/121 (73.55%), Postives = 98/121 (80.99%), Query Frame = 0


Query: 1   MAKIIYVVVVAFVFLVVHATGRNVSGGG--KDEDQTLEMAVAPAADPPSSGGVDDQKNIF 60
           MAK I VV+VAFVF +++  GR V  G   + E QTLE A +P A+PP  GGVDDQKNIF
Sbjct: 1   MAKKI-VVLVAFVFFIMNVDGRKVPEGASRQGEYQTLERAASPVAEPPCRGGVDDQKNIF 60

Query: 61  GGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPF 120
           GGVGG  GMGGYIGGLFPHLGG+G IGKYGGIGGG GFGHGGFG GVGGVGG+GGGVVPF
Sbjct: 61  GGVGGFTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFGHGGFGAGVGGVGGVGGGVVPF 120

[Close]

BLAST of Spg023926 vs. ExPASy TrEMBL
Match: A0A1S3CEA9 (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499502 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.1e-33
Identity = 89/121 (73.55%), Postives = 98/121 (80.99%), Query Frame = 0


Query: 1   MAKIIYVVVVAFVFLVVHATGRNVSGGG--KDEDQTLEMAVAPAADPPSSGGVDDQKNIF 60
           MAK I VV+VAFVF +++  GR V  G   + E QTLE A +P A+PP  GGVDDQKNIF
Sbjct: 1   MAKKI-VVLVAFVFFIMNVDGRKVPEGASRQGEYQTLERAASPVAEPPCRGGVDDQKNIF 60

Query: 61  GGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGHGGFGGGVGGVGGIGGGVVPF 120
           GGVGG  GMGGYIGGLFPHLGG+G IGKYGGIGGG GFGHGGFG GVGGVGG+GGGVVPF
Sbjct: 61  GGVGGFTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFGHGGFGAGVGGVGGVGGGVVPF 120

[Close]

BLAST of Spg023926 vs. ExPASy TrEMBL
Match: A0A6J1CDU6 (WW domain-containing protein C660.06 OS=Momordica charantia OX=3673 GN=LOC111009813 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.8e-24
Identity = 84/134 (62.69%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 1   MAKI-IYVVVVAFVFLVVHATGRNVSGGGK--DEDQTLEMAVAPAADPPSSGGVDDQKN- 60
           M KI ++VV+ AFV LVVHA+GR+V G  +  D+DQTLE+A  P ADPPSSGGV +QK  
Sbjct: 1   MVKIYVFVVLAAFVLLVVHASGRHVPGHDRSDDKDQTLELAPTPVADPPSSGGVREQKQI 60

Query: 61  IFGGVGGVAGMGGYIGGLFPHL--GGIGVIGKYGGIGGGIGF---GHGGFGGGVGGVGGI 120
           IFGGVGG AGMGG++GGLFPHL  GG+G IGK+GGIGGG G    G GG GG  GG GG+
Sbjct: 61  IFGGVGGFAGMGGFVGGLFPHLGFGGVGGIGKFGGIGGGTGIIPGGVGGIGGVGGGAGGV 120

[Close]

BLAST of Spg023926 vs. TAIR 10
Match: AT1G04660.1 (glycine-rich protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 62/137 (45.26%), Postives = 74/137 (54.01%), Query Frame = 0


Query: 1   MAKIIYVVVVAFVFLVVHATGRNVSG-------GGKDEDQTLEMAVAPAADPPSSGGVDD 60
           M++ + VV V      V A  R V G        G D+  T+ M  A AAD      V D
Sbjct: 1   MSRALSVVCVLLAISFVCARARQVPGESDEGKTTGHDDTTTMPMH-AKAADQLPPKSVGD 60

Query: 61  QKNIFG--GVGGVAGMGGY--IGGL-FPHLGGIGVIGKYGGIGGGIGFGH---------- 116
           +K I G  GVGG AG+GG   +GGL  P +GG+G IGKYGGIGG  G G           
Sbjct: 61  KKCIGGVAGVGGFAGVGGVAGVGGLGMPLIGGLGGIGKYGGIGGAAGIGGFHSIGGVGGL 120

[Close]

BLAST of Spg023926 vs. TAIR 10
Match: AT4G29020.2 (glycine-rich protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.3e-04
Identity = 43/85 (50.59%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 38  AVAPAADPPSSGGVDDQKNI--FGGVGGVAGMGGY------IGGLFPHLGGIGVIGKYGG 97
           A  PA       G+DDQKN   F GVGG AG+GG       +GG+   +GG+  +   GG
Sbjct: 21  ATRPAPTKNVGAGLDDQKNFVAFAGVGGAAGIGGAGGVGAGLGGVAGGVGGVAGVLPVGG 80

Query: 98  IGGGIGFGHGGFGGGVGGVGGIGGG 115
           +GGGIG G GG  GGVGG+GGIGGG
Sbjct: 81  VGGGIG-GLGGI-GGVGGLGGIGGG 103

[Close]

BLAST of Spg023926 vs. TAIR 10
Match: AT4G29020.1 (glycine-rich protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.2e-04
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 38  AVAPAADPPSSGGVDDQKNI--FGGVGGVAGMGGY------IGGLFPHLGGIGVIGKYGG 97
           A  PA       G+DDQKN   F GVGG AG+GG       +GG+   +GG+  +   GG
Sbjct: 21  ATRPAPTKNVGAGLDDQKNFVAFAGVGGAAGIGGAGGVGAGLGGVAGGVGGVAGVLPVGG 80

Query: 98  IGGGIGFGHGGFGGGVGGVGGIGGG 115
           +GGGIG G GG  GG+GG+GG+GGG
Sbjct: 81  VGGGIG-GLGGGVGGLGGLGGLGGG 104

The following BLAST results are available for this feature:

BLAST of Spg023926 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906734.1	4.2e-40	84.17	glycine-rich protein 5-like [Benincasa hispida]	[more]
XP_022964503.1	1.4e-35	80.17	glycine-rich protein 5-like [Cucurbita moschata]	[more]
XP_023515156.1	1.4e-35	80.17	glycine-rich protein 23-like [Cucurbita pepo subsp. pepo]	[more]
XP_023000565.1	4.1e-35	79.34	glycine-rich protein 5-like [Cucurbita maxima]	[more]
KAG7026124.1	1.2e-34	78.63	hypothetical protein SDJN02_12623, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Spg023926 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg023926 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HL05	6.8e-36	80.17	glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464508 PE=4 S...	[more]
A0A6J1KIQ3	2.0e-35	79.34	glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111494807 PE=4 SV=...	[more]
A0A5D3D259	4.1e-33	73.55	Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CEA9	4.1e-33	73.55	glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1CDU6	7.8e-24	62.69	WW domain-containing protein C660.06 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]

BLAST of Spg023926 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04660.1	1.3e-07	45.26	glycine-rich protein	[more]
AT4G29020.2	2.3e-04	50.59	glycine-rich protein	[more]
AT4G29020.1	5.2e-04	48.24	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463:SF12	GLYCINE-RICH PROTEIN	coord: 1..114
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg023926.1	Spg023926.1	mRNA