Spg023872 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg023872
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold13: 11913644 .. 11915712 (-)
RNA-Seq Expression	Spg023872
Synteny	Spg023872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGAAGAAGAAGCTTGCTGGAGGTATGAGGTTGAAGAAGAGAGGAAAGGTTCATGCAAGTGCAACCATGGCAGAATCTGGGTTCAACCTGCCTATCTCTGGTTCTTAATTCGTTTTGAGCTACACAAGAAGAACTAAGAGGTGCGGTCTGACTTTCTTGAAAGTTAGTCCATTTTCTAACAAATTTCATGAAGGAAGTTTGAGCTAAATCGGATTGTAAGTTAATGGTTTTTGAAGAGGAAAACAGAGCACATAATTTTCATGCAAATCAGAAGGATCTCTGGTTTTCTCTGGTTTTTCGAACATTCTGGGTGTACAGGTTGAATTAGAAGCTCAATTAGGTATGGTTGGAAAGATTATTCAATTTCCTATAACTTTCATGAAGATTTCGTGAGCCAAAAATGACTAGAGGTAGGTTTAATTTCAGGAGAAATGTAGAGGGTAGCAGAGAAGCACGAATCTGTATTTGCTGTGTTCGGGGGATTGCTGACAAATCCTTTGGGAATCTCATTTTCATTCCTTGGAGTAAGTTGTAGAGGGTTCCAAAATGAAGAGTTTGATATATAGTACATTAATTTTTGTCAAGTATTGAGGAAGTTATGAGTGTTGGAAGTTAGGGTATTGAATCTGGAAAATCTGGAAAAAAGTGTGAAGTGTGATTTTATTTCTAGAATTTAGAATTCATGAGCATGGAAAGACAAGACGATTTATAGTTCTGATGCTCGGTTTTGGTTTGTTTGACAGGCCAAGAGGAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTGAGTGACAAAACGAATTTCGGAAATGATTTCTAAACTGTTATTTATGCCTAACTGGTTACATGTTTGAATATGAACTTATGAATGATACATGATTTCTATGAATCGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAATGAGGTTTATATACGAGCGCGTGATTATTGACTTTCTGAAAAGTAGTTGAAACGATATCATTTAAAGCAAAGTATGTATTAGCGAGTACTGCTTAAAGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGCTTGAGTCTTGCGAAAGATAAAGATAAGCAGGTATGTTTTAATGTTTTCATGTTGTTTTCTAAGACTTTTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGACCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTTGATTTGTCATGTTAGTTAAAATGTTTTATATACTTAATATTCCTTGCTAGATTTTAATGACGTACTTGCGGAGTATTTTAGAAAGCTTTTATCATTACAAGTTTATGTTTAACGCTTTGATTGAACAGATTTATTCGTTTAAAGGTTTATCACGTGTTCTGATTTGCGGATTTACAGTTTTAAATTTAGTCACTCACTAGGCTTCGTAGCTCACTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATAAACTGCCAAAGTCTGCTAAAACGTCCTAGATCAAGTTCGAGTACGTGGGTGGAGTTGTACATCGAGTCTGTTGATCTTGTAAATGTCTTTGTAAGGATTGGATAGTTTATGGTTTGTGTAAGCTCTAGATGTTGTGGTTGTATAAACCCTAATTGGATATGGTTTTGGTTGTGATGTCTCTATTAGGTTTATTTTCCAAAGTGAATTAAGTCAGGGCTGCACTTCTGGTATGTCTAAAGACTATCAAGGTTCCGCTGTGTTGTGTTGCATGTAAAGTATTCCATATCTAAGTTTACCATGTTTATCAGGTTCAACGTTTCAGCAGGATCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCGTCTCCCAGACTAAGCTAGCAGGTAGTTCGGGAGGGGGTGTGACAACTTGGTATCAAAGCAGTTAG

mRNA sequence

ATGAAGAGGAAGAAGAAGCTTGCTGGAGGTATGAGGTTGAAGAAGAGAGGAAAGGTTCATGCAAGTGCAACCATGGCAGAATCTGGGCCAAGAGGAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATAAACTGCCAAAGTTTATTTTCCAAAGTGAATTAAGTCAGGGCTGCACTTCTGGTTCAACGTTTCAGCAGGATCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCGTCTCCCAGACTAAGCTAGCAGGTAGTTCGGGAGGGGGTGTGACAACTTGGTATCAAAGCAGTTAG

Coding sequence (CDS)

ATGAAGAGGAAGAAGAAGCTTGCTGGAGGTATGAGGTTGAAGAAGAGAGGAAAGGTTCATGCAAGTGCAACCATGGCAGAATCTGGGCCAAGAGGAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATAAACTGCCAAAGTTTATTTTCCAAAGTGAATTAAGTCAGGGCTGCACTTCTGGTTCAACGTTTCAGCAGGATCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCGTCTCCCAGACTAAGCTAGCAGGTAGTTCGGGAGGGGGTGTGACAACTTGGTATCAAAGCAGTTAG

Protein sequence

MKRKKKLAGGMRLKKRGKVHASATMAESGPRGNRPSLQTRELAKTVEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGVTTWYQSS

Homology

[Close]

BLAST of Spg023872 vs. NCBI nr
Match: KAA0037515.1 (uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa] >TYK01990.1 uncharacterized protein E5676_scaffold808G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 49/100 (49.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 30  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSELSQGCTSG 89
           PRGNR SLQT EL KT                 VEIELPV D LP     S  S G  S 
Sbjct: 100 PRGNRLSLQTGELDKTVIFLLLTLTVLCDNDAIVEIELPVSDTLP----MSAESSGSNSR 159

Query: 90  STFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGVTTWYQ 113
           S         + EDDVCWLH V + K AG  GGGVTTWYQ
Sbjct: 160 SA------GIVREDDVCWLHVVFRVKTAGGPGGGVTTWYQ 189

[Close]

BLAST of Spg023872 vs. NCBI nr
Match: TYK11725.1 (uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-08
Identity = 45/99 (45.45%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 30  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSE----LSQG 89
           PRGNRPSLQT EL KT                 VEIELPVPD LP   ++       S  
Sbjct: 62  PRGNRPSLQTGELDKTVIFLLSTLSVLCDNDAVVEIELPVPDTLPTLFYKPSDVRAASYV 121

Query: 90  CTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGV 108
           C  GS         +  DDVCWLHAV + K+AG  GGGV
Sbjct: 122 CWEGSA------GIVRGDDVCWLHAVCRAKIAGGPGGGV 154

[Close]

BLAST of Spg023872 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 4.1e-08
Identity = 44/98 (44.90%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 30  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSELSQGCTSG 89
           PRGNRPSLQT +L KT                 VEIELPVPD LP            TS 
Sbjct: 55  PRGNRPSLQTGKLDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLP------------TSA 114

Query: 90  STFQQDQQVS--LEEDDVCWLHAVSQTKLAGSSGGGVT 109
            +F+ + + +  +  DDVCWLHAV + K AG  GGGVT
Sbjct: 115 ESFESNSRSTGIVRGDDVCWLHAVFRAKTAGGPGGGVT 140

[Close]

BLAST of Spg023872 vs. NCBI nr
Match: KAA0066738.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK27886.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 7.0e-08
Identity = 47/113 (41.59%), Postives = 51/113 (45.13%), Query Frame = 0


Query: 30  PRGNRPSLQTRELAKT----------------------------VEIELPVPDKLPKFIF 89
           PRGNRPSLQT EL KT                            VEIELP PD LP   +
Sbjct: 34  PRGNRPSLQTGELDKTIIFPLSTLSILRDNDVIVYHMNMFPTFHVEIELPGPDTLPTLFY 93

Query: 90  QSE----LSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGVTTW 111
           +       S  C  GS         +  DDVCWLHAV + K AG  GGGVTTW
Sbjct: 94  KPSDVRAASYVCWEGSA------GIVRGDDVCWLHAVFRAKPAGGLGGGVTTW 140

[Close]

BLAST of Spg023872 vs. NCBI nr
Match: KAA0025985.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 4.5e-07
Identity = 33/69 (47.83%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 46  VEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGG 105
           VEIELPVPD LP   ++          +++         EDDVCWLH V + K  G SGG
Sbjct: 7   VEIELPVPDTLPTLFYK----PSDVRAASYVLGSAGIAREDDVCWLHTVFRAKTTGGSGG 66

Query: 106 GVTTWYQSS 115
           GV+TWYQSS
Sbjct: 67  GVSTWYQSS 71

[Close]

BLAST of Spg023872 vs. ExPASy TrEMBL
Match: A0A5D3BSA6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001020 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 49/100 (49.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 30  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSELSQGCTSG 89
           PRGNR SLQT EL KT                 VEIELPV D LP     S  S G  S 
Sbjct: 100 PRGNRLSLQTGELDKTVIFLLLTLTVLCDNDAIVEIELPVSDTLP----MSAESSGSNSR 159

Query: 90  STFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGVTTWYQ 113
           S         + EDDVCWLH V + K AG  GGGVTTWYQ
Sbjct: 160 SA------GIVREDDVCWLHVVFRVKTAGGPGGGVTTWYQ 189

[Close]

BLAST of Spg023872 vs. ExPASy TrEMBL
Match: A0A5D3CJL4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00370 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.9e-09
Identity = 45/99 (45.45%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 30  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSE----LSQG 89
           PRGNRPSLQT EL KT                 VEIELPVPD LP   ++       S  
Sbjct: 62  PRGNRPSLQTGELDKTVIFLLSTLSVLCDNDAVVEIELPVPDTLPTLFYKPSDVRAASYV 121

Query: 90  CTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGV 108
           C  GS         +  DDVCWLHAV + K+AG  GGGV
Sbjct: 122 CWEGSA------GIVRGDDVCWLHAVCRAKIAGGPGGGV 154

[Close]

BLAST of Spg023872 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 44/98 (44.90%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 30  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSELSQGCTSG 89
           PRGNRPSLQT +L KT                 VEIELPVPD LP            TS 
Sbjct: 55  PRGNRPSLQTGKLDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLP------------TSA 114

Query: 90  STFQQDQQVS--LEEDDVCWLHAVSQTKLAGSSGGGVT 109
            +F+ + + +  +  DDVCWLHAV + K AG  GGGVT
Sbjct: 115 ESFESNSRSTGIVRGDDVCWLHAVFRAKTAGGPGGGVT 140

[Close]

BLAST of Spg023872 vs. ExPASy TrEMBL
Match: A0A5D3DVW9 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.4e-08
Identity = 47/113 (41.59%), Postives = 51/113 (45.13%), Query Frame = 0


Query: 30  PRGNRPSLQTRELAKT----------------------------VEIELPVPDKLPKFIF 89
           PRGNRPSLQT EL KT                            VEIELP PD LP   +
Sbjct: 34  PRGNRPSLQTGELDKTIIFPLSTLSILRDNDVIVYHMNMFPTFHVEIELPGPDTLPTLFY 93

Query: 90  QSE----LSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGVTTW 111
           +       S  C  GS         +  DDVCWLHAV + K AG  GGGVTTW
Sbjct: 94  KPSDVRAASYVCWEGSA------GIVRGDDVCWLHAVFRAKPAGGLGGGVTTW 140

[Close]

BLAST of Spg023872 vs. ExPASy TrEMBL
Match: A0A5A7SNE5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003030 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-07
Identity = 33/69 (47.83%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 46  VEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGG 105
           VEIELPVPD LP   ++          +++         EDDVCWLH V + K  G SGG
Sbjct: 7   VEIELPVPDTLPTLFYK----PSDVRAASYVLGSAGIAREDDVCWLHTVFRAKTTGGSGG 66

Query: 106 GVTTWYQSS 115
           GV+TWYQSS
Sbjct: 67  GVSTWYQSS 71

The following BLAST results are available for this feature:

BLAST of Spg023872 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037515.1	1.3e-09	49.00	uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa] >TYK...	[more]
TYK11725.1	1.8e-08	45.45	uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]	[more]
KAA0060199.1	4.1e-08	44.90	uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0066738.1	7.0e-08	41.59	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK27886.1 D...	[more]
KAA0025985.1	4.5e-07	47.83	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Spg023872 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg023872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BSA6	6.2e-10	49.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CJL4	8.9e-09	45.45	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BAD1	2.0e-08	44.90	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DVW9	3.4e-08	41.59	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SNE5	2.2e-07	47.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]

BLAST of Spg023872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg023872.1	Spg023872.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003824	catalytic activity