Spg022907 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg022907
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerase subunit alpha
Location	scaffold64: 25196 .. 27684 (-)
RNA-Seq Expression	Spg022907
Synteny	Spg022907

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAGGGTATGCAACGAGCAGAAGTCATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGTGGTATACTCTTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAAACGACGTGTGTAAAAATAAACATTGAAGAGAAATTTCAAGAGAAATAAATAATTCAATGATTTGATCAAAAAATATTACTATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGTCAAGCCGATACTATAGGCATTGCGATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATACCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGGGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCTGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAGCCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCGTATACAAACGCAAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCGGTTCGAAATGCGAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTATTTATTCCTTTTTTACATGCGGAAGAAGAAAACTTCCATTTTAAAAACAATAAACAGAAAGTGACTTTACCCCTTTTTACTTTTCATGAGAAATTGGCTAAACTAAGGAAAAAGAAAAAAGAAATAGCATTAAAATATATTTTTATTGACCAATCAGAATTGCCTCCTAGGATCTATAATTGCCTCAAAAGGTCCAATATACATACATTATTTGACCTTTTGAATAATAGTCCAGACGAACTTATGAAAATGAAACATTTTCGCATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTTGCATAAATTTTAAATCCATTGGATTTTTTTTGTAGAAAAACTTTAGCAAAAAAAAAGACGAAAACGAAGTTTGAATCTTTAACGGAATCCGTATACTCAAAATCAATCAAAAATTTAATTAAATATGTGTATCTAGGGGTAATTTACTTTGCTTTGAAGCAACTATTCCCTAGATACACACGTCGTGATATTTTATTTATTTCACAATTGAATCAATTTAAAAAAGACCTAAAGTTAGGGATTTATCAATCGGTAATGTTGCTCCAATACCCAACCAAAGGGCTACTGCGGTACCAATCAAAAAGACGGTTGTCGCTACTGGACGACGAAATGGATTTTGGAATTTATTGACATTCTCCAAAAATGGTACAGTTAATAATCCCGCAGGTACGGAAACCATTAAAAGAACACCCAATAACTTATTTGGCACTGTACGAAGGATTTGAAATACGGGAAAGAAATACCATTCCGGCAATATTTCCAAAGGAGTTGCAAATGGATCCGCGGGTTCACCAATCATTGATGGTTCTAGAACCGCTAAGCCCACGTTACATGCAATAGTACCTAGAATTACTACTGGAAAAATATATAAAAGATCATTGGGCCATGCGGGTTCTCCGTAATAATTATGACCCATACCCTTAGCCAATTTAGCTCTTAATACAGGATCATTCAAATCTGGTTTTTTTGTTATTAGGATAGGTGAATTATTATGGATCCATCCCCCGAAGGAACCGGACATGATAATTTTTCATCATCCGGCTCGAGCACAAATCAAACGAACCAACTGGATCCAGATAAAAAATCGATATCTTATCCAAGCATATATAAAATAAAATAAATGATTGATTCAATGTAAGAAAAAATTTAGCAGATTCCGTTTTCCAGAGTTACAATTATCCATTGCAAGGAATTCACTTCTTACAGATAAATGCTCAATACCCAAGTAGGCTTACAAAGTTGATAATGTTCAAGTGCTTTCTGGGTCGTCTCAGACCTTGCGATGGGGCTTTAG

mRNA sequence

ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAGGGTATGCAACGAGCAGAAGTCATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGTGGTATACTCTTAAGTTTCATACGGGATGGTCAAGCCGATACTATAGGCATTGCGATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATACCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGGGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCTGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAGCCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCGTATACAAACGCAAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCGGTTCGAAATGCGAATCATATTAATAATCCCGCAGACCTTGCGATGGGGCTTTAG

Coding sequence (CDS)

ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAGGGTATGCAACGAGCAGAAGTCATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGTGGTATACTCTTAAGTTTCATACGGGATGGTCAAGCCGATACTATAGGCATTGCGATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATACCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGGGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCTGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAGCCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCGTATACAAACGCAAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCGGTTCGAAATGCGAATCATATTAATAATCCCGCAGACCTTGCGATGGGGCTTTAG

Protein sequence

MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTQNNFQDASYPIDAIFMPVRNANHINNPADLAMGL

Homology

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BLAST of Spg022907 vs. NCBI nr
Match: PRQ15682.1 (putative DNA-directed RNA polymerase [Rosa chinensis])

HSP 1 Score: 470.7 bits (1210), Expect = 8.7e-129
Identity = 250/317 (78.86%), Postives = 259/317 (81.70%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP+IGSRRN RI SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKIGSRRNRRIGSRKNARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 D---------------------------------------------------GQADTIGI 180
           D                                                   GQADTIGI
Sbjct: 121 DVTPMPHNGCRPPKKRRKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGI 180

Query: 181 AMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAS 240
           AMR+ALLGEIEGTCITRA+SEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTR+AS
Sbjct: 181 AMRRALLGEIEGTCITRARSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNAS 240

Query: 241 ICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTQNNFQD 267
           ICVKGPG VTAQDIILPPSVEIVDNTQHIANLTEPINLCI+L+IERNRGYRI+T NNFQD
Sbjct: 241 ICVKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIQLQIERNRGYRIKTPNNFQD 300

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BLAST of Spg022907 vs. NCBI nr
Match: TXG68058.1 (hypothetical protein EZV62_009333 [Acer yangbiense])

HSP 1 Score: 463.8 bits (1192), Expect = 1.1e-126
Identity = 242/288 (84.03%), Postives = 250/288 (86.81%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAK IPR GSRR GR+ SRKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKSIPRSGSRRTGRVGSRKSARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSF-- 120
           F+GTRRGTPFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSF  
Sbjct: 61  FRGTRRGTPFAAQTAAGNAIRAVTDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFWK 120

Query: 121 --------------------IRDGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYST 180
                               +  GQADTIGIAMR+ALLGEIEGTCITRAKSEKIPHEYST
Sbjct: 121 CVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYST 180

Query: 181 IVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI 240
           IVGIQESVHEILMNLKEIVLRSNLYGTRDA ICVKGPG VTAQDI+LPPSVEIVDNTQHI
Sbjct: 181 IVGIQESVHEILMNLKEIVLRSNLYGTRDALICVKGPGYVTAQDILLPPSVEIVDNTQHI 240

Query: 241 ANLTEPINLCIELKIERNRGYRIQTQNNFQDASYPIDAIFMPVRNANH 267
           ANLTEP + CI L+IERNRGY I+T NNFQD SYPIDAIFMPVRNANH
Sbjct: 241 ANLTEPTDFCIGLQIERNRGYNIKTPNNFQDGSYPIDAIFMPVRNANH 288

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BLAST of Spg022907 vs. NCBI nr
Match: XP_027332403.1 (uncharacterized protein LOC113847446 [Abrus precatorius] >XP_027332529.1 uncharacterized protein LOC113847521 [Abrus precatorius] >XP_027332764.1 uncharacterized protein LOC113847686 [Abrus precatorius] >XP_027339175.1 uncharacterized protein LOC113852952 [Abrus precatorius] >XP_027344314.1 uncharacterized protein LOC113856613 [Abrus precatorius] >XP_027345341.1 uncharacterized protein LOC113857538 [Abrus precatorius] >XP_027345910.1 uncharacterized protein LOC113857838 [Abrus precatorius])

HSP 1 Score: 458.8 bits (1179), Expect = 3.4e-125
Identity = 239/307 (77.85%), Postives = 252/307 (82.08%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP++GSR+NGRI SRK   +IPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKMGSRKNGRIGSRKHAHKIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+FIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRTVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIR 120

Query: 121 D-----------------------------------------GQADTIGIAMRKALLGEI 180
           D                                         GQADTIGIA+R+ LLGEI
Sbjct: 121 DVTPMPHNGCRSPKKRRWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAVRRVLLGEI 180

Query: 181 EGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVT 240
           EGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT+DASIC KGPG +T
Sbjct: 181 EGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTQDASICFKGPGYIT 240

Query: 241 AQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTQNNFQDASYPIDAIFM 267
           AQDIILPPSVEI+DNTQHIANLTEPINLCI LKIERNRGYRI+T  NFQD S+PIDA+FM
Sbjct: 241 AQDIILPPSVEIIDNTQHIANLTEPINLCIGLKIERNRGYRIKTLKNFQDGSFPIDAVFM 300

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BLAST of Spg022907 vs. NCBI nr
Match: KAF4397623.1 (hypothetical protein G4B88_027363 [Cannabis sativa])

HSP 1 Score: 452.6 bits (1163), Expect = 2.5e-123
Identity = 242/317 (76.34%), Postives = 252/317 (79.50%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAK IPR GSR+N    SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKAIPRSGSRKNRHTGSRKNARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTAAGNAIR VVDQGMQ+AEVMIKGPGLGRDAALRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRTVVDQGMQQAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 D---------------------------------------------------GQADTIGI 180
           D                                                   GQADTIGI
Sbjct: 121 DVTPMPHNGCRPPKKRQKVIVSTRPLQWKCVESRADSKRLYYGRFILAPLMRGQADTIGI 180

Query: 181 AMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAS 240
            MR+ALLGEIEGTCITRAKS+KIPHEYS +VGIQESVHEILMNLKEIVLRSNLYGTR+AS
Sbjct: 181 VMRRALLGEIEGTCITRAKSDKIPHEYSNLVGIQESVHEILMNLKEIVLRSNLYGTREAS 240

Query: 241 ICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTQNNFQD 267
           ICVKGPG VTAQDIILP SVEIVDNTQHIANLTEPINLCIEL+IERNRGYRI+T NNFQ+
Sbjct: 241 ICVKGPGYVTAQDIILPSSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQN 300

[Close]

BLAST of Spg022907 vs. NCBI nr
Match: KAF6144918.1 (hypothetical protein GIB67_003990 [Kingdonia uniflora])

HSP 1 Score: 449.5 bits (1155), Expect = 2.1e-122
Identity = 236/316 (74.68%), Postives = 249/316 (78.80%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           M KPIPRIGSRRNGRI SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRV+SWSSAGTCG
Sbjct: 1   MTKPIPRIGSRRNGRIGSRKNVRRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTA GNAIR VVDQGMQRAEVMIKGPGLGRDAALR IRRSGI LS +R
Sbjct: 61  FKGTRRGTPFAAQTATGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRTIRRSGIRLSLVR 120

Query: 121 D--------------------------------------------------GQADTIGIA 180
           D                                                  GQADTIGIA
Sbjct: 121 DITPMPHNGCRPPKKGEVTVSTRKVQWKCVESKVDSKRLYYGRFILSPLMKGQADTIGIA 180

Query: 181 MRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASI 240
           MR+ LLGEI+GTCITRAKSEKIPHEYSTIVGI+ESVHEILMNLKEIVLRSNLYGTRDASI
Sbjct: 181 MRRVLLGEIDGTCITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASI 240

Query: 241 CVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTQNNFQDA 267
           CV+GPG VTA DII PPSVEI+D TQHIANLTEPI+LCI L+IERNRGYR++T NN QD 
Sbjct: 241 CVRGPGYVTAHDIISPPSVEIIDTTQHIANLTEPIDLCIRLQIERNRGYRMKTPNNAQDG 300

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BLAST of Spg022907 vs. ExPASy Swiss-Prot
Match: Q4VZK3 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 6.8e-76
Identity = 141/152 (92.76%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 115 LLSFIRDGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLK 174
           +LS +  GQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLK
Sbjct: 33  ILSPLMKGQGDTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLK 92

Query: 175 EIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIE 234
           EIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIE
Sbjct: 93  EIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLMEPINLCIELKIE 152

Query: 235 RNRGYRIQTQNNFQDASYPIDAIFMPVRNANH 267
           RNRGY IQT NNFQDASYP+DAIFMPVRN NH
Sbjct: 153 RNRGYHIQTPNNFQDASYPMDAIFMPVRNVNH 184

[Close]

BLAST of Spg022907 vs. ExPASy Swiss-Prot
Match: Q09WY5 (DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.3e-74
Identity = 138/152 (90.79%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 115 LLSFIRDGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLK 174
           LL+ +  GQADTIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLK
Sbjct: 33  LLAPLMRGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLK 92

Query: 175 EIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIE 234
           EIVLRSNLYGTRDASICVKGPG VTAQDIILPPSVEIVDNTQHIANLTEPI LCIEL+IE
Sbjct: 93  EIVLRSNLYGTRDASICVKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPITLCIELQIE 152

Query: 235 RNRGYRIQTQNNFQDASYPIDAIFMPVRNANH 267
           RNRGYRI+T NNFQ+ SYPIDA+FMPVRNANH
Sbjct: 153 RNRGYRIKTPNNFQNGSYPIDAVFMPVRNANH 184

[Close]

BLAST of Spg022907 vs. ExPASy Swiss-Prot
Match: Q49KW6 (DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoA PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-71
Identity = 134/152 (88.16%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 115 LLSFIRDGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLK 174
           +LS +  GQADTIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLK
Sbjct: 33  ILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKFEKIPHEYSTIVGIQESVHEILMNLK 92

Query: 175 EIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIE 234
           EIVLRSNLYGTR+ASICVKGPGCVTAQDIILP SVEIVDNTQ+IANLTEPINLCI L+IE
Sbjct: 93  EIVLRSNLYGTRNASICVKGPGCVTAQDIILPTSVEIVDNTQYIANLTEPINLCIGLQIE 152

Query: 235 RNRGYRIQTQNNFQDASYPIDAIFMPVRNANH 267
           RNRGY I+T  NFQD SYPIDA+FMPVRNANH
Sbjct: 153 RNRGYHIKTPKNFQDGSYPIDAVFMPVRNANH 184

[Close]

BLAST of Spg022907 vs. ExPASy Swiss-Prot
Match: Q2PMQ3 (DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-71
Identity = 132/152 (86.84%), Postives = 140/152 (92.11%), Query Frame = 0


Query: 115 LLSFIRDGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLK 174
           +LS +  GQADTIGIAMR+ LLGEIEGTCITR KSEKIPHEYSTI+GI+ESVHEILMNLK
Sbjct: 33  ILSPLMKGQADTIGIAMRRVLLGEIEGTCITRVKSEKIPHEYSTIIGIEESVHEILMNLK 92

Query: 175 EIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIE 234
           EIVLRSNLYGTRDASIC KGPG VTAQDIILPPSVEIVDNTQHIAN+TEP+NLCIELKIE
Sbjct: 93  EIVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANVTEPVNLCIELKIE 152

Query: 235 RNRGYRIQTQNNFQDASYPIDAIFMPVRNANH 267
           RNRGYRI+T  NFQD SYPIDA FMPVRN NH
Sbjct: 153 RNRGYRIKTLKNFQDGSYPIDATFMPVRNVNH 184

[Close]

BLAST of Spg022907 vs. ExPASy Swiss-Prot
Match: Q9MTJ3 (DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri OX=85636 GN=rpoA PE=3 SV=2)

HSP 1 Score: 266.9 bits (681), Expect = 2.5e-70
Identity = 130/152 (85.53%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 115 LLSFIRDGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLK 174
           +LS +  GQADTIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLK
Sbjct: 33  ILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKFEKIPHEYSTIVGIQESVHEILMNLK 92

Query: 175 EIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIE 234
           EIVLRSNLYGT +ASICVKGPGCVTAQDI+LPPSVEI+DNTQHIA+L EPI+LCI L+IE
Sbjct: 93  EIVLRSNLYGTCNASICVKGPGCVTAQDILLPPSVEIIDNTQHIASLMEPIHLCIGLQIE 152

Query: 235 RNRGYRIQTQNNFQDASYPIDAIFMPVRNANH 267
           RNRGY I++ NNFQD SYPIDA+FMPVRNANH
Sbjct: 153 RNRGYHIKSPNNFQDGSYPIDAVFMPVRNANH 184

[Close]

BLAST of Spg022907 vs. ExPASy TrEMBL
Match: A0A2P6P177 (Multifunctional fusion protein OS=Rosa chinensis OX=74649 GN=rps11 PE=3 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 4.2e-129
Identity = 250/317 (78.86%), Postives = 259/317 (81.70%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP+IGSRRN RI SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKIGSRRNRRIGSRKNARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 D---------------------------------------------------GQADTIGI 180
           D                                                   GQADTIGI
Sbjct: 121 DVTPMPHNGCRPPKKRRKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGI 180

Query: 181 AMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAS 240
           AMR+ALLGEIEGTCITRA+SEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTR+AS
Sbjct: 181 AMRRALLGEIEGTCITRARSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNAS 240

Query: 241 ICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTQNNFQD 267
           ICVKGPG VTAQDIILPPSVEIVDNTQHIANLTEPINLCI+L+IERNRGYRI+T NNFQD
Sbjct: 241 ICVKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIQLQIERNRGYRIKTPNNFQD 300

[Close]

BLAST of Spg022907 vs. ExPASy TrEMBL
Match: A0A5C7IG80 (Plastid-encoded RNA polymerase subunit alpha OS=Acer yangbiense OX=1000413 GN=EZV62_009333 PE=3 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 5.1e-127
Identity = 242/288 (84.03%), Postives = 250/288 (86.81%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAK IPR GSRR GR+ SRKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKSIPRSGSRRTGRVGSRKSARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSF-- 120
           F+GTRRGTPFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSF  
Sbjct: 61  FRGTRRGTPFAAQTAAGNAIRAVTDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFWK 120

Query: 121 --------------------IRDGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYST 180
                               +  GQADTIGIAMR+ALLGEIEGTCITRAKSEKIPHEYST
Sbjct: 121 CVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYST 180

Query: 181 IVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHI 240
           IVGIQESVHEILMNLKEIVLRSNLYGTRDA ICVKGPG VTAQDI+LPPSVEIVDNTQHI
Sbjct: 181 IVGIQESVHEILMNLKEIVLRSNLYGTRDALICVKGPGYVTAQDILLPPSVEIVDNTQHI 240

Query: 241 ANLTEPINLCIELKIERNRGYRIQTQNNFQDASYPIDAIFMPVRNANH 267
           ANLTEP + CI L+IERNRGY I+T NNFQD SYPIDAIFMPVRNANH
Sbjct: 241 ANLTEPTDFCIGLQIERNRGYNIKTPNNFQDGSYPIDAIFMPVRNANH 288

[Close]

BLAST of Spg022907 vs. ExPASy TrEMBL
Match: A0A7J6HQR3 (Plastid-encoded RNA polymerase subunit alpha OS=Cannabis sativa OX=3483 GN=G4B88_027363 PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.2e-123
Identity = 242/317 (76.34%), Postives = 252/317 (79.50%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAK IPR GSR+N    SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKAIPRSGSRKNRHTGSRKNARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTAAGNAIR VVDQGMQ+AEVMIKGPGLGRDAALRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRTVVDQGMQQAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 D---------------------------------------------------GQADTIGI 180
           D                                                   GQADTIGI
Sbjct: 121 DVTPMPHNGCRPPKKRQKVIVSTRPLQWKCVESRADSKRLYYGRFILAPLMRGQADTIGI 180

Query: 181 AMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAS 240
            MR+ALLGEIEGTCITRAKS+KIPHEYS +VGIQESVHEILMNLKEIVLRSNLYGTR+AS
Sbjct: 181 VMRRALLGEIEGTCITRAKSDKIPHEYSNLVGIQESVHEILMNLKEIVLRSNLYGTREAS 240

Query: 241 ICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTQNNFQD 267
           ICVKGPG VTAQDIILP SVEIVDNTQHIANLTEPINLCIEL+IERNRGYRI+T NNFQ+
Sbjct: 241 ICVKGPGYVTAQDIILPSSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQN 300

[Close]

BLAST of Spg022907 vs. ExPASy TrEMBL
Match: A0A7J7LQU6 (RPOLD domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_003990 PE=3 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 1.0e-122
Identity = 236/316 (74.68%), Postives = 249/316 (78.80%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           M KPIPRIGSRRNGRI SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRV+SWSSAGTCG
Sbjct: 1   MTKPIPRIGSRRNGRIGSRKNVRRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTA GNAIR VVDQGMQRAEVMIKGPGLGRDAALR IRRSGI LS +R
Sbjct: 61  FKGTRRGTPFAAQTATGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRTIRRSGIRLSLVR 120

Query: 121 D--------------------------------------------------GQADTIGIA 180
           D                                                  GQADTIGIA
Sbjct: 121 DITPMPHNGCRPPKKGEVTVSTRKVQWKCVESKVDSKRLYYGRFILSPLMKGQADTIGIA 180

Query: 181 MRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASI 240
           MR+ LLGEI+GTCITRAKSEKIPHEYSTIVGI+ESVHEILMNLKEIVLRSNLYGTRDASI
Sbjct: 181 MRRVLLGEIDGTCITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASI 240

Query: 241 CVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTQNNFQDA 267
           CV+GPG VTA DII PPSVEI+D TQHIANLTEPI+LCI L+IERNRGYR++T NN QD 
Sbjct: 241 CVRGPGYVTAHDIISPPSVEIIDTTQHIANLTEPIDLCIRLQIERNRGYRMKTPNNAQDG 300

[Close]

BLAST of Spg022907 vs. ExPASy TrEMBL
Match: G7JH57 (Plastid-encoded RNA polymerase subunit alpha OS=Medicago truncatula OX=3880 GN=MTR_4g051380 PE=3 SV=2)

HSP 1 Score: 441.8 bits (1135), Expect = 2.1e-120
Identity = 232/293 (79.18%), Postives = 246/293 (83.96%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAK IP+IGSR+NGRI SRK  R+IPKGVI+VQASFNNTIVTVTDVRGRVISWSSAG+CG
Sbjct: 1   MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS-------- 120
           FKGTRRGTPFAAQTAA NAIR VVDQGMQRA V+IKGPGLGRDAALRAI RS        
Sbjct: 61  FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSEKVKVSAR 120

Query: 121 -------------------GILLSFIRDGQADTIGIAMRKALLGEIEGTCITRAKSEKIP 180
                                +LS +R GQADTIGIAMR+ LLGEIEGTCITRAKSEKIP
Sbjct: 121 TLQWKCVESRVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGTCITRAKSEKIP 180

Query: 181 HEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVD 240
           HEYSTIVGIQES+HEILMNLKEIVL+SNLYGTRDASIC KGPG VTAQDIILPPSVEIVD
Sbjct: 181 HEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVD 240

Query: 241 NTQHIANLTEPINLCIELKIERNRGYRIQTQNNFQDASYPIDAIFMPVRNANH 267
           NTQHIANLTEPINLCIEL+IER RGYRI+T NN QD SY IDA+FMPVRNANH
Sbjct: 241 NTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANH 293

[Close]

BLAST of Spg022907 vs. TAIR 10
Match: ATCG00740.1 (RNA polymerase subunit alpha )

HSP 1 Score: 254.6 bits (649), Expect = 9.1e-68
Identity = 122/152 (80.26%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 115 LLSFIRDGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLK 174
           +LS +  GQADTIGIAMR+ALLGEIEGTCITRAKSE IPH+YS I GIQESVHEILMNL 
Sbjct: 33  ILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSENIPHDYSNIAGIQESVHEILMNLN 92

Query: 175 EIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIE 234
           EIVLRSNLYGTR+A ICV+GPG +TA+DIILPP+VEI+DNTQHIA LTEPI+LCIELKIE
Sbjct: 93  EIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIIDNTQHIATLTEPIDLCIELKIE 152

Query: 235 RNRGYRIQTQNNFQDASYPIDAIFMPVRNANH 267
           RNRGY ++  NNF+D SYPIDA+FMPV NANH
Sbjct: 153 RNRGYSLKMSNNFEDRSYPIDAVFMPVENANH 184

[Close]

BLAST of Spg022907 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 213.8 bits (543), Expect = 1.8e-55
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPI RIGSR+N R  SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPILRIGSRKNTRSGSRKNVRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           F+GTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV IKGPGLGRDAALRAIRRSGILLSF+R
Sbjct: 61  FRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVR 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Spg022907 vs. TAIR 10
Match: AT3G52580.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 52.4 bits (124), Expect = 6.9e-07
Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 28  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQ 87
           GV+HV ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + 
Sbjct: 28  GVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 88  GMQRAEVMI--------KGPGLGRDAALRAIRRSGILLSFIRD 122
           G+    V +        K PG G  +ALRA+ RSG+ +  I D
Sbjct: 88  GITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIED 130

[Close]

BLAST of Spg022907 vs. TAIR 10
Match: AT2G36160.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 52.0 bits (123), Expect = 9.0e-07
Identity = 36/103 (34.95%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 28  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQ 87
           GV+H+ ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + 
Sbjct: 28  GVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 88  GMQRAEVMI--------KGPGLGRDAALRAIRRSGILLSFIRD 122
           G+    V +        K PG G  +ALRA+ RSG+ +  I D
Sbjct: 88  GITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIED 130

[Close]

BLAST of Spg022907 vs. TAIR 10
Match: AT3G11510.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 52.0 bits (123), Expect = 9.0e-07
Identity = 36/103 (34.95%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 28  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQ 87
           GV+H+ ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + 
Sbjct: 28  GVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 88  GMQRAEVMI--------KGPGLGRDAALRAIRRSGILLSFIRD 122
           G+    V +        K PG G  +ALRA+ RSG+ +  I D
Sbjct: 88  GITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIED 130

The following BLAST results are available for this feature:

BLAST of Spg022907 vs. NCBI nr


Match Name	E-value	Identity	Description
PRQ15682.1	8.7e-129	78.86	putative DNA-directed RNA polymerase [Rosa chinensis]	[more]
TXG68058.1	1.1e-126	84.03	hypothetical protein EZV62_009333 [Acer yangbiense]	[more]
XP_027332403.1	3.4e-125	77.85	uncharacterized protein LOC113847446 [Abrus precatorius] >XP_027332529.1 unchara...	[more]
KAF4397623.1	2.5e-123	76.34	hypothetical protein G4B88_027363 [Cannabis sativa]	[more]
KAF6144918.1	2.1e-122	74.68	hypothetical protein GIB67_003990 [Kingdonia uniflora]	[more]

BLAST of Spg022907 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK3	6.8e-76	92.76	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=...	[more]
Q09WY5	8.3e-74	90.79	DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3...	[more]
Q49KW6	1.3e-71	88.16	DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus...	[more]
Q2PMQ3	1.3e-71	86.84	DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV...	[more]
Q9MTJ3	2.5e-70	85.53	DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri OX=8...	[more]

BLAST of Spg022907 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P6P177	4.2e-129	78.86	Multifunctional fusion protein OS=Rosa chinensis OX=74649 GN=rps11 PE=3 SV=1	[more]
A0A5C7IG80	5.1e-127	84.03	Plastid-encoded RNA polymerase subunit alpha OS=Acer yangbiense OX=1000413 GN=EZ...	[more]
A0A7J6HQR3	1.2e-123	76.34	Plastid-encoded RNA polymerase subunit alpha OS=Cannabis sativa OX=3483 GN=G4B88...	[more]
A0A7J7LQU6	1.0e-122	74.68	RPOLD domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_003990 P...	[more]
G7JH57	2.1e-120	79.18	Plastid-encoded RNA polymerase subunit alpha OS=Medicago truncatula OX=3880 GN=M...	[more]

BLAST of Spg022907 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00740.1	9.1e-68	80.26	RNA polymerase subunit alpha	[more]
ATCG00750.1	1.8e-55	91.74	ribosomal protein S11	[more]
AT3G52580.1	6.9e-07	35.92	Ribosomal protein S11 family protein	[more]
AT2G36160.1	9.0e-07	34.95	Ribosomal protein S11 family protein	[more]
AT3G11510.1	9.0e-07	34.95	Ribosomal protein S11 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 115..276 e-value: 3.0E-4 score: -25.0
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 28..121 e-value: 3.5E-38 score: 130.4
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 11..138 score: 23.17626
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 141..258 e-value: 3.7E-36 score: 125.7
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 141..259
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 148..241 e-value: 3.4E-16 score: 59.6
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 12..133 e-value: 2.2E-34 score: 120.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR32108:SF1	SUBFAMILY NOT NAMED	coord: 24..266
None	No IPR available	CDD	cd06928	RNAP_alpha_NTD	coord: 122..265 e-value: 1.62491E-67 score: 206.937
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 24..121
IPR011773	DNA-directed RNA polymerase, alpha subunit	PANTHER	PTHR32108	DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA	coord: 24..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg022907.1	Spg022907.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome