Spg022907 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAGGGTATGCAACGAGCAGAAGTCATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGTGGTATACTCTTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAAACGACGTGTGTAAAAATAAACATTGAAGAGAAATTTCAAGAGAAATAAATAATTCAATGATTTGATCAAAAAATATTACTATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGTCAAGCCGATACTATAGGCATTGCGATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATACCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGGGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCTGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAGCCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCGTATACAAACGCAAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCGGTTCGAAATGCGAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTATTTATTCCTTTTTTACATGCGGAAGAAGAAAACTTCCATTTTAAAAACAATAAACAGAAAGTGACTTTACCCCTTTTTACTTTTCATGAGAAATTGGCTAAACTAAGGAAAAAGAAAAAAGAAATAGCATTAAAATATATTTTTATTGACCAATCAGAATTGCCTCCTAGGATCTATAATTGCCTCAAAAGGTCCAATATACATACATTATTTGACCTTTTGAATAATAGTCCAGACGAACTTATGAAAATGAAACATTTTCGCATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTTGCATAAATTTTAAATCCATTGGATTTTTTTTGTAGAAAAACTTTAGCAAAAAAAAAGACGAAAACGAAGTTTGAATCTTTAACGGAATCCGTATACTCAAAATCAATCAAAAATTTAATTAAATATGTGTATCTAGGGGTAATTTACTTTGCTTTGAAGCAACTATTCCCTAGATACACACGTCGTGATATTTTATTTATTTCACAATTGAATCAATTTAAAAAAGACCTAAAGTTAGGGATTTATCAATCGGTAATGTTGCTCCAATACCCAACCAAAGGGCTACTGCGGTACCAATCAAAAAGACGGTTGTCGCTACTGGACGACGAAATGGATTTTGGAATTTATTGACATTCTCCAAAAATGGTACAGTTAATAATCCCGCAGGTACGGAAACCATTAAAAGAACACCCAATAACTTATTTGGCACTGTACGAAGGATTTGAAATACGGGAAAGAAATACCATTCCGGCAATATTTCCAAAGGAGTTGCAAATGGATCCGCGGGTTCACCAATCATTGATGGTTCTAGAACCGCTAAGCCCACGTTACATGCAATAGTACCTAGAATTACTACTGGAAAAATATATAAAAGATCATTGGGCCATGCGGGTTCTCCGTAATAATTATGACCCATACCCTTAGCCAATTTAGCTCTTAATACAGGATCATTCAAATCTGGTTTTTTTGTTATTAGGATAGGTGAATTATTATGGATCCATCCCCCGAAGGAACCGGACATGATAATTTTTCATCATCCGGCTCGAGCACAAATCAAACGAACCAACTGGATCCAGATAAAAAATCGATATCTTATCCAAGCATATATAAAATAAAATAAATGATTGATTCAATGTAAGAAAAAATTTAGCAGATTCCGTTTTCCAGAGTTACAATTATCCATTGCAAGGAATTCACTTCTTACAGATAAATGCTCAATACCCAAGTAGGCTTACAAAGTTGATAATGTTCAAGTGCTTTCTGGGTCGTCTCAGACCTTGCGATGGGGCTTTAG ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAGGGTATGCAACGAGCAGAAGTCATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGTGGTATACTCTTAAGTTTCATACGGGATGGTCAAGCCGATACTATAGGCATTGCGATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATACCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGGGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCTGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAGCCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCGTATACAAACGCAAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCGGTTCGAAATGCGAATCATATTAATAATCCCGCAGACCTTGCGATGGGGCTTTAG ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAGGGTATGCAACGAGCAGAAGTCATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGTGGTATACTCTTAAGTTTCATACGGGATGGTCAAGCCGATACTATAGGCATTGCGATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATACCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGGGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCTGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAGCCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCGTATACAAACGCAAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCGGTTCGAAATGCGAATCATATTAATAATCCCGCAGACCTTGCGATGGGGCTTTAG MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTQNNFQDASYPIDAIFMPVRNANHINNPADLAMGL Homology
BLAST of Spg022907 vs. NCBI nr
Match: PRQ15682.1 (putative DNA-directed RNA polymerase [Rosa chinensis]) HSP 1 Score: 470.7 bits (1210), Expect = 8.7e-129 Identity = 250/317 (78.86%), Postives = 259/317 (81.70%), Query Frame = 0
BLAST of Spg022907 vs. NCBI nr
Match: TXG68058.1 (hypothetical protein EZV62_009333 [Acer yangbiense]) HSP 1 Score: 463.8 bits (1192), Expect = 1.1e-126 Identity = 242/288 (84.03%), Postives = 250/288 (86.81%), Query Frame = 0
BLAST of Spg022907 vs. NCBI nr
Match: XP_027332403.1 (uncharacterized protein LOC113847446 [Abrus precatorius] >XP_027332529.1 uncharacterized protein LOC113847521 [Abrus precatorius] >XP_027332764.1 uncharacterized protein LOC113847686 [Abrus precatorius] >XP_027339175.1 uncharacterized protein LOC113852952 [Abrus precatorius] >XP_027344314.1 uncharacterized protein LOC113856613 [Abrus precatorius] >XP_027345341.1 uncharacterized protein LOC113857538 [Abrus precatorius] >XP_027345910.1 uncharacterized protein LOC113857838 [Abrus precatorius]) HSP 1 Score: 458.8 bits (1179), Expect = 3.4e-125 Identity = 239/307 (77.85%), Postives = 252/307 (82.08%), Query Frame = 0
BLAST of Spg022907 vs. NCBI nr
Match: KAF4397623.1 (hypothetical protein G4B88_027363 [Cannabis sativa]) HSP 1 Score: 452.6 bits (1163), Expect = 2.5e-123 Identity = 242/317 (76.34%), Postives = 252/317 (79.50%), Query Frame = 0
BLAST of Spg022907 vs. NCBI nr
Match: KAF6144918.1 (hypothetical protein GIB67_003990 [Kingdonia uniflora]) HSP 1 Score: 449.5 bits (1155), Expect = 2.1e-122 Identity = 236/316 (74.68%), Postives = 249/316 (78.80%), Query Frame = 0
BLAST of Spg022907 vs. ExPASy Swiss-Prot
Match: Q4VZK3 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 6.8e-76 Identity = 141/152 (92.76%), Postives = 144/152 (94.74%), Query Frame = 0
BLAST of Spg022907 vs. ExPASy Swiss-Prot
Match: Q09WY5 (DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 8.3e-74 Identity = 138/152 (90.79%), Postives = 145/152 (95.39%), Query Frame = 0
BLAST of Spg022907 vs. ExPASy Swiss-Prot
Match: Q49KW6 (DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoA PE=3 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 1.3e-71 Identity = 134/152 (88.16%), Postives = 142/152 (93.42%), Query Frame = 0
BLAST of Spg022907 vs. ExPASy Swiss-Prot
Match: Q2PMQ3 (DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 1.3e-71 Identity = 132/152 (86.84%), Postives = 140/152 (92.11%), Query Frame = 0
BLAST of Spg022907 vs. ExPASy Swiss-Prot
Match: Q9MTJ3 (DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri OX=85636 GN=rpoA PE=3 SV=2) HSP 1 Score: 266.9 bits (681), Expect = 2.5e-70 Identity = 130/152 (85.53%), Postives = 142/152 (93.42%), Query Frame = 0
BLAST of Spg022907 vs. ExPASy TrEMBL
Match: A0A2P6P177 (Multifunctional fusion protein OS=Rosa chinensis OX=74649 GN=rps11 PE=3 SV=1) HSP 1 Score: 470.7 bits (1210), Expect = 4.2e-129 Identity = 250/317 (78.86%), Postives = 259/317 (81.70%), Query Frame = 0
BLAST of Spg022907 vs. ExPASy TrEMBL
Match: A0A5C7IG80 (Plastid-encoded RNA polymerase subunit alpha OS=Acer yangbiense OX=1000413 GN=EZV62_009333 PE=3 SV=1) HSP 1 Score: 463.8 bits (1192), Expect = 5.1e-127 Identity = 242/288 (84.03%), Postives = 250/288 (86.81%), Query Frame = 0
BLAST of Spg022907 vs. ExPASy TrEMBL
Match: A0A7J6HQR3 (Plastid-encoded RNA polymerase subunit alpha OS=Cannabis sativa OX=3483 GN=G4B88_027363 PE=3 SV=1) HSP 1 Score: 452.6 bits (1163), Expect = 1.2e-123 Identity = 242/317 (76.34%), Postives = 252/317 (79.50%), Query Frame = 0
BLAST of Spg022907 vs. ExPASy TrEMBL
Match: A0A7J7LQU6 (RPOLD domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_003990 PE=3 SV=1) HSP 1 Score: 449.5 bits (1155), Expect = 1.0e-122 Identity = 236/316 (74.68%), Postives = 249/316 (78.80%), Query Frame = 0
BLAST of Spg022907 vs. ExPASy TrEMBL
Match: G7JH57 (Plastid-encoded RNA polymerase subunit alpha OS=Medicago truncatula OX=3880 GN=MTR_4g051380 PE=3 SV=2) HSP 1 Score: 441.8 bits (1135), Expect = 2.1e-120 Identity = 232/293 (79.18%), Postives = 246/293 (83.96%), Query Frame = 0
BLAST of Spg022907 vs. TAIR 10
Match: ATCG00740.1 (RNA polymerase subunit alpha ) HSP 1 Score: 254.6 bits (649), Expect = 9.1e-68 Identity = 122/152 (80.26%), Postives = 137/152 (90.13%), Query Frame = 0
BLAST of Spg022907 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 ) HSP 1 Score: 213.8 bits (543), Expect = 1.8e-55 Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0
BLAST of Spg022907 vs. TAIR 10
Match: AT3G52580.1 (Ribosomal protein S11 family protein ) HSP 1 Score: 52.4 bits (124), Expect = 6.9e-07 Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 0
BLAST of Spg022907 vs. TAIR 10
Match: AT2G36160.1 (Ribosomal protein S11 family protein ) HSP 1 Score: 52.0 bits (123), Expect = 9.0e-07 Identity = 36/103 (34.95%), Postives = 52/103 (50.49%), Query Frame = 0
BLAST of Spg022907 vs. TAIR 10
Match: AT3G11510.1 (Ribosomal protein S11 family protein ) HSP 1 Score: 52.0 bits (123), Expect = 9.0e-07 Identity = 36/103 (34.95%), Postives = 52/103 (50.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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