Spg022081 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg022081
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold2: 5263997 .. 5265290 (+)
RNA-Seq Expression	Spg022081
Synteny	Spg022081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAATCTTCGGAAAGGTTTCAACAATGGACGATTCCGAGGTAATTTTTCTGTTAAATTTGTCAATAAGTTAAAATATTACATATTTTCTTCGCCTGTAATCTTCTCATTTAGGAGTGTTCGATTTTGTTTGTGTTGCTCTTTTTCCAAGTTTAATCTTATTGGTTAATGGATGTTTAGATATCGACGGGCCTTGAAGAAGGATGTACATCGCAATGCGGCAAAAGAAGCGGCGGCGCAGATCATGGTAGGAGAAGAAAGGTGTTCGGTTTCGGGAGGAGATTTTTCACGGTTAAGGATGAAGCACTTCGGATGCTTGTTAGACGGCCAAAGAATTCTGGATAGCAAGGTAGAATGGTGGAACCTGGGCATTCCATGATTATGTCTAGTGTTTTGCATATATCTGTGATTTTTAGGGCTCATATTTGGTAATTGAGACAAATGTTTATATAACCGTCATCAGCTTCGGTTTCTGGTGTTGATTTCGTTAGAAGATTGTTCGGACTTCGGAGTTACTTTTTATTTCTTCTTTTGCCCTGTGCACAGTATAGAGGAAATTGTTTGTTCAACACCTGTTATTGTGTGATCTTATGATCCTTATGTTATAATCTAACATTGTTCTATTATGGCTGTTCGACTTTTTGTAATTTCAGTAGCTTACTACATTCTAAACCAATGACAACATTATTTGTAATTTATAAAGTCAAACAATCTAAGTCTAAGTTATTTTGTTAGTAAATGATTCTAATTCAAACCTTTAGTTCTGTCTTCTGCTATGTTTTCCTTTCTGTGATGAACAGCCGTTGAGTTGTAATTTTCTGCAATTGCAGGTCAGAGGAAACGAGATGAGATAACTTTGGGCTCGGATTGGAGAACCAGAAGATGCAGTGAACGTCAAAGATACTGGGTAAGAATTGCTAGAATTTCTGGATAAATTGGAGAAAGTGATGAACAGAAATATACAATCTGTATATGAAAAAACTTTAACAGGAAGTATTGCTGCTTAGAAAGACGTCATTACGGCCTCATTCTCTTGGTTATGGTGAGTCCATGATTTTTTAAAATAGATCTCCTCTGGACGCTCATGACTTGTGAAATGGACATGTCAGGTAAGTGTAAGCTTAAAGAAACAAGTGATACTGACTTTGCCTTCATTAAAAGGAGAAGCAAAGAATCAGAACCTTTTAGAAATGACTATACTCACATAGAAATCTGTTCTGTGGAAAAATCTATTTTCTTGGACAGACTAATGATTCCTCTCATGAAATACTTAGCGGAATTGCAGAAGGGATGA

mRNA sequence

ATGGACGATTCCGAGATATCGACGGGCCTTGAAGAAGGATGTACATCGCAATGCGGCAAAAGAAGCGGCGGCGCAGATCATGGTCAGAGGAAACGAGATGAGATAACTTTGGGCTCGGATTGGAGAACCAGAAGATGCAGTGAACGTCAAAGATACTGGGAAGTATTGCTGCTTAGAAAGACGTCATTACGGCCTCATTCTCTTGGTTATGGTAAGTGTAAGCTTAAAGAAACAAGTGATACTGACTTTGCCTTCATTAAAAGGAGAAGCAAAGAATCAGAACCTTTTAGAAATGACTATACTCACATAGAAATCTGTTCTGTGGAAAAATCTATTTTCTTGGACAGACTAATGATTCCTCTCATGAAATACTTAGCGGAATTGCAGAAGGGATGA

Coding sequence (CDS)

ATGGACGATTCCGAGATATCGACGGGCCTTGAAGAAGGATGTACATCGCAATGCGGCAAAAGAAGCGGCGGCGCAGATCATGGTCAGAGGAAACGAGATGAGATAACTTTGGGCTCGGATTGGAGAACCAGAAGATGCAGTGAACGTCAAAGATACTGGGAAGTATTGCTGCTTAGAAAGACGTCATTACGGCCTCATTCTCTTGGTTATGGTAAGTGTAAGCTTAAAGAAACAAGTGATACTGACTTTGCCTTCATTAAAAGGAGAAGCAAAGAATCAGAACCTTTTAGAAATGACTATACTCACATAGAAATCTGTTCTGTGGAAAAATCTATTTTCTTGGACAGACTAATGATTCCTCTCATGAAATACTTAGCGGAATTGCAGAAGGGATGA

Protein sequence

MDDSEISTGLEEGCTSQCGKRSGGADHGQRKRDEITLGSDWRTRRCSERQRYWEVLLLRKTSLRPHSLGYGKCKLKETSDTDFAFIKRRSKESEPFRNDYTHIEICSVEKSIFLDRLMIPLMKYLAELQKG

Homology

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BLAST of Spg022081 vs. NCBI nr
Match: KAG6589477.1 (hypothetical protein SDJN03_14900, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-06
Identity = 50/125 (40.00%), Postives = 57/125 (45.60%), Query Frame = 0


Query: 28  GQRKRDEITLGSDWRTRRCSERQRYWEVLLLRKTSLRP-HSLGYG--------------- 87
           G RKRD ITLGSD R R CSE      +   +  +LRP +SLGYG               
Sbjct: 59  GWRKRDAITLGSDSRGRSCSE----GHIATKKDMTLRPLNSLGYGESTVILSGSPLEQQL 118

Query: 88  ---------KCKLKETSDTDFAFIKRRSKESEPFRNDYTHIEICSVEKSIFLDRLMIPLM 128
                    K KLK TSDTDFAFI RR KESEP +                     +P M
Sbjct: 119 ITCEMDMSVKRKLKSTSDTDFAFIIRRGKESEPLK--------------------WMPTM 159

The following BLAST results are available for this feature:

BLAST of Spg022081 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589477.1	3.4e-06	40.00	hypothetical protein SDJN03_14900, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg022081 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg022081 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg022081 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg022081.1	Spg022081.1	mRNA