Spg020264 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg020264
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold1: 24145655 .. 24146661 (+)
RNA-Seq ExpressionSpg020264
SyntenySpg020264
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAAACAAGAGGGAGGAAAGAAAGAGATACTGAGGAAGAAGACGTGTCCATTACCCCTGAGGCACCGAAGACAAAAGTAAAGAGAAGGAAGACGTCGAAAGAGAGAGAGGCTAAGAGACGAAGAATACAACAGAGAGCTGAGGTTACGGAAGGAGTGAGAAAGGTGATTGAGGACATTGCTGATGAAGCGGTTGAAAAAGAACAACCAAAGGAACCTGAGGAAGAGAAAGATGTTGAACAGGGTGAACCGATAGTTGAAAATCCGCAAGAAGTGCAAGAGAAGAAAGCTGAAGAAGTGCAAGAGCAAGGAAACGGTCAGGAAACCGAAGAGTGGCAGGTTCAGACTGCAGAAGTTGTGCCGGAAATTCCACGTCATCACCGTCGGAAGCAGAAGGCAGGCCGAATCAAAGTGATCAGGACAGACACTCCATCGCCGTCGACGACAGAATCTGAGAAAGAAAACTCAGAAAAAGAAGAACAAGAGAAAAAAAGGGGGCAGAGGACCAGAAAAGAGAAGAAGCAGAAAAGAAGGCAGAGGAAGAAACTTTGACGAAACATCAAGAAGACAAGGGCAAGGAAGGAGCAAGAATGCCGTTTATTCGCTTTGTCAATCAACTTGCCAGAGCAAAATACAGAGAGATGCTGAAACGAGATTTCTTGTTTGAAAGAGGTTTTGGTGAAGATTTACCGCATTTCTTGAGGGCTGGAATAGCAAATCACGGGTGGAGTCAATTCTGTGCAAAACCAGATCCATTAAATTCAAACATTGTTCGTGAATTTTACGCGAACATAGATGATCAAGAAGGATTCCAAGTCATGGTCCGAGGGGTGGCTGTCGATTGTAGCCCAAGAGCAATAAATTATCTCTTCAACCTCCAGGATTTTCCGCATGCTGGATTTAATGAGATGGTGGTGGCACCATCTAACGATCAATTGAACGCGGTTGTTAGGGAGGTTGTGAAGGATTTAGAATTCCCTAATTCCGATAAAGAGGAAGCATAA

mRNA sequence

ATGGCTAAAACAAGAGGGAGGAAAGAAAGAGATACTGAGGAAGAAGACGTGTCCATTACCCCTGAGGCACCGAAGACAAAAGTAAAGAGAAGGAAGACGTCGAAAGAGAGAGAGGCTAAGAGACGAAGAATACAACAGAGAGCTGAGGTTACGGAAGGAGTGAGAAAGGTGATTGAGGACATTGCTGATGAAGCGGTTGAAAAAGAACAACCAAAGGAACCTGAGGAAGAGAAAGATGTTGAACAGGGTGAACCGATAGTTGAAAATCCGCAAGAAGTGCAAGAGAAGAAAGCTGAAGAAGTGCAAGAGCAAGGAAACGGTCAGGAAACCGAAGAGTGGCAGGTTCAGACTGCAGAAGTTGTGCCGGAAATTCCACGTCATCACCGTCGGAAGCAGAAGGCAGGCCGAATCAAAGGGGCAGAGGACCAGAAAAGAGAAGAAGCAGAAAAGAAGGCAGAGGAAGAAACTTTGACGAAACATCAAGAAGACAAGGGCAAGGAAGGAGCAAGAATGCCGTTTATTCGCTTTGTCAATCAACTTGCCAGAGCAAAATACAGAGAGATGCTGAAACGAGATTTCTTGTTTGAAAGAGGTTTTGGTGAAGATTTACCGCATTTCTTGAGGGCTGGAATAGCAAATCACGGGTGGAGTCAATTCTGTGCAAAACCAGATCCATTAAATTCAAACATTGTTCGTGAATTTTACGCGAACATAGATGATCAAGAAGGATTCCAAGTCATGGTCCGAGGGGTGGCTGTCGATTGTAGCCCAAGAGCAATAAATTATCTCTTCAACCTCCAGGATTTTCCGCATGCTGGATTTAATGAGATGGTGGTGGCACCATCTAACGATCAATTGAACGCGGTTGTTAGGGAGGTTGTGAAGGATTTAGAATTCCCTAATTCCGATAAAGAGGAAGCATAA

Coding sequence (CDS)

ATGGCTAAAACAAGAGGGAGGAAAGAAAGAGATACTGAGGAAGAAGACGTGTCCATTACCCCTGAGGCACCGAAGACAAAAGTAAAGAGAAGGAAGACGTCGAAAGAGAGAGAGGCTAAGAGACGAAGAATACAACAGAGAGCTGAGGTTACGGAAGGAGTGAGAAAGGTGATTGAGGACATTGCTGATGAAGCGGTTGAAAAAGAACAACCAAAGGAACCTGAGGAAGAGAAAGATGTTGAACAGGGTGAACCGATAGTTGAAAATCCGCAAGAAGTGCAAGAGAAGAAAGCTGAAGAAGTGCAAGAGCAAGGAAACGGTCAGGAAACCGAAGAGTGGCAGGTTCAGACTGCAGAAGTTGTGCCGGAAATTCCACGTCATCACCGTCGGAAGCAGAAGGCAGGCCGAATCAAAGGGGCAGAGGACCAGAAAAGAGAAGAAGCAGAAAAGAAGGCAGAGGAAGAAACTTTGACGAAACATCAAGAAGACAAGGGCAAGGAAGGAGCAAGAATGCCGTTTATTCGCTTTGTCAATCAACTTGCCAGAGCAAAATACAGAGAGATGCTGAAACGAGATTTCTTGTTTGAAAGAGGTTTTGGTGAAGATTTACCGCATTTCTTGAGGGCTGGAATAGCAAATCACGGGTGGAGTCAATTCTGTGCAAAACCAGATCCATTAAATTCAAACATTGTTCGTGAATTTTACGCGAACATAGATGATCAAGAAGGATTCCAAGTCATGGTCCGAGGGGTGGCTGTCGATTGTAGCCCAAGAGCAATAAATTATCTCTTCAACCTCCAGGATTTTCCGCATGCTGGATTTAATGAGATGGTGGTGGCACCATCTAACGATCAATTGAACGCGGTTGTTAGGGAGGTTGTGAAGGATTTAGAATTCCCTAATTCCGATAAAGAGGAAGCATAA

Protein sequence

MAKTRGRKERDTEEEDVSITPEAPKTKVKRRKTSKEREAKRRRIQQRAEVTEGVRKVIEDIADEAVEKEQPKEPEEEKDVEQGEPIVENPQEVQEKKAEEVQEQGNGQETEEWQVQTAEVVPEIPRHHRRKQKAGRIKGAEDQKREEAEKKAEEETLTKHQEDKGKEGARMPFIRFVNQLARAKYREMLKRDFLFERGFGEDLPHFLRAGIANHGWSQFCAKPDPLNSNIVREFYANIDDQEGFQVMVRGVAVDCSPRAINYLFNLQDFPHAGFNEMVVAPSNDQLNAVVREVVKDLEFPNSDKEEA
Homology
BLAST of Spg020264 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-08
Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 0

Query: 174 IRFVNQLARAKYREMLK-RDFLFERGFGED------LPHFLRAGIANHGWSQFCAKPDPL 233
           ++  ++ A  +Y E ++ R    E+GF  D       P F+   I  H W  FCA P+ L
Sbjct: 14  VKLKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDL 73

Query: 234 NSNIVREFYANIDDQEGFQVMVRGVAVDCSPRAINYLFNLQDFPHAGFNEMVVAPSNDQL 293
            + +VREFYAN+ + +   V VRGV V  S  AIN ++ L D P    +E V A +  +L
Sbjct: 74  IAPLVREFYANMTNPDDDTVYVRGVQVPLSAEAINTIYGLGD-PVDEHSEFVEAITEPEL 133

BLAST of Spg020264 vs. NCBI nr
Match: RYE21173.1 (hypothetical protein EOP45_09925 [Sphingobacteriaceae bacterium])

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-08
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 0

Query: 176 FVNQLARAKYREMLKRDFLFERGFGEDLPHFLRAGIAN----HGWSQFCAKPD-PLNSNI 235
           F ++ A  +Y  +++R  +FERG        + + I N      W +FCA P+   N  +
Sbjct: 8   FTSKAAEERYDILVQRSPIFERGLKVSSTTPIGSQINNTIEGFSWRKFCATPEHKANVTL 67

Query: 236 VREFYANIDDQEGFQVMVRGVAVDCSPRAINYLFNLQD--FPHAGFNEMVVAPSNDQLNA 291
           + EFYAN+ D E   V VRGV VDCS  AIN L    D  F + G+ + +  P+ D++ +
Sbjct: 68  MYEFYANLPDHEDDVVTVRGVDVDCSVGAINALLGTPDIEFENEGYRQWLRNPNLDEMLS 127

BLAST of Spg020264 vs. NCBI nr
Match: KAE8695166.1 (hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus])

HSP 1 Score: 69.7 bits (169), Expect = 5.0e-08
Identity = 35/98 (35.71%), Postives = 53/98 (54.08%), Query Frame = 0

Query: 176 FVNQLARAKYREMLKRDFLFERGF------GEDLPHFLRAGIANHGWSQFCAKPDPLNSN 235
           FV++ A+  Y+ +  R   FE GF        +L   +   +  H W +F   P P+N+ 
Sbjct: 15  FVDEAAKEHYQTIKNRRVFFELGFVFSEAENANLGSEVLDVVTKHKWQKFAKHPVPVNAT 74

Query: 236 IVREFYANIDDQEGFQVMVRGVAVDCSPRAINYLFNLQ 268
           IV+EFY+NI +     VMVRG+++  +P AIN  F LQ
Sbjct: 75  IVKEFYSNITEPNQHAVMVRGISIRFTPTAINRYFKLQ 112

BLAST of Spg020264 vs. NCBI nr
Match: PON85987.1 (hypothetical protein TorRG33x02_181920, partial [Trema orientale])

HSP 1 Score: 65.5 bits (158), Expect = 9.3e-07
Identity = 52/150 (34.67%), Postives = 73/150 (48.67%), Query Frame = 0

Query: 155 ETLTKHQEDK--GKEGARMPF--IRFVNQLARAKYREMLKRDFL-FERGF----GEDLPH 214
           E + +HQ  K   K  AR     ++F  + A  +Y E +++  L  E+GF     E +  
Sbjct: 23  ENIIRHQSTKIGIKRVARKAHKAVKFETEEAETRYEENIQKQPLNAEKGFLLNNSETMGQ 82

Query: 215 --FLRAGIANHGWSQFCAKPDPLNSNIVREFYANIDDQEGFQVMVRGVAVDCSPRAINYL 274
             F+   I  H W QFCA P+     +VREFYAN+ D E   V VRGV V  +  AIN +
Sbjct: 83  QPFIAQVINQHNWRQFCAHPEDPIVPLVREFYANLTDPEEDTVYVRGVQVPWTEEAINTV 142

Query: 275 FNLQDFPHAGFNEMVVAPSNDQLNAVVREV 294
           F L D P    +E V   +  +L  V+  V
Sbjct: 143 FGLGD-PVDEHSEFVADITEQELIMVLETV 171

BLAST of Spg020264 vs. ExPASy TrEMBL
Match: A0A4Q3ENY7 (Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_09925 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 0

Query: 176 FVNQLARAKYREMLKRDFLFERGFGEDLPHFLRAGIAN----HGWSQFCAKPD-PLNSNI 235
           F ++ A  +Y  +++R  +FERG        + + I N      W +FCA P+   N  +
Sbjct: 8   FTSKAAEERYDILVQRSPIFERGLKVSSTTPIGSQINNTIEGFSWRKFCATPEHKANVTL 67

Query: 236 VREFYANIDDQEGFQVMVRGVAVDCSPRAINYLFNLQD--FPHAGFNEMVVAPSNDQLNA 291
           + EFYAN+ D E   V VRGV VDCS  AIN L    D  F + G+ + +  P+ D++ +
Sbjct: 68  MYEFYANLPDHEDDVVTVRGVDVDCSVGAINALLGTPDIEFENEGYRQWLRNPNLDEMLS 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON42276.11.3e-0834.65hypothetical protein PanWU01x14_283280 [Parasponia andersonii][more]
RYE21173.12.9e-0834.43hypothetical protein EOP45_09925 [Sphingobacteriaceae bacterium][more]
KAE8695166.15.0e-0835.71hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus][more]
PON85987.19.3e-0734.67hypothetical protein TorRG33x02_181920, partial [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A4Q3ENY71.4e-0834.43Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_099... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 137..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg020264.1Spg020264.1mRNA