Spg019442 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg019442
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotrans_gag domain-containing protein
Location	scaffold1: 41298721 .. 41301039 (-)
RNA-Seq Expression	Spg019442
Synteny	Spg019442

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAATCTTATTCAATTATCTACAACTTTCATGAAGAATTCGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGGAAGATAAAGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGAATTTCTGGACAAATTAGTTGGGAATCTCGTTTTCCTTTCTTCCGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGATATAGAATCTGGAAAATCTGGAAAGTAGAATTGTGAATGTGATTCTTAATCCAATTGTTCAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGCTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACTGGGGAACTAGATAAGACTGTGAGTGACAAAATGAATTTCGAAAATGTTCTTAAACGGTTGTTCATGATTATATGTTTTACATGCTTTCCTATGAATGATACATGGTTTTTATGAACGGTTTCAAGCATGAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGTCTAATGACTTTATGAAAAATAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAACGATTTCCAGTTTTTCATGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTTTTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTCATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATATTTTAGAAAGCCTTTTTCATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATTCGTTTAAAGGTTTATCACGTGTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATCCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAAGGGTTGCATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTATATCAGGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAGCGTTTCAATAGGGTCAACAGGGATTGTTAGAGGTGACGATGTCTGTTGCCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGCTATCCTAGGTAACTTTAGGGGATATGAATGCAATGCTCGTTAGGTGATGAGACTTGAGGCTTGGGTGAGCTTCACCATAAAGTGTTGCCATTCTGGGACCAAAAAGGCTATGATCTAAGAGATTTTTCTAAGATGGTAAAAGCCAAAAAGGGAATAAGAGTTGAGAGAAGTTTGGGTTGAGCTTAGAGTTCTAATAACTTGGGCAATAGGATTTTAGGCTTGCTTAGCAAGCTTGAGGATTAGATTGTTGAGCTAAGAAAGAAAGAAAGTTAGTGGCTTGTTTGATGCCTTTAGGTGGGCACAATTAGATTTGATAGCTAATCAAGGTGAGCTAAGAGCATGGATTAAAAGCATAATGTTGATTTGGAGATGCCAAGTACTGTTGCCTAGTTGTTTTTAAATGTTGAATTCTTTTTGGAGTTATGAGCATTTGTTAAGGGAAGTTTTGAGCAAGAAGTAGTTGTGCAGCATCTGAGAAGCTCTAGTGTGAGGCTAGTCGACTTTTCCTGTTTAGCTGAGCTTTTGGCCTAG

mRNA sequence

ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACTGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAATAGGGTCAACAGGGATTGTTAGAGGTGACGATGTCTGTTGCCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGCTATCCTAGCATTTGTTAAGGGAAGTTTTGAGCAAGAAGTAGTTGTGCAGCATCTGAGAAGCTCTAGTGTGAGGCTAGTCGACTTTTCCTGTTTAGCTGAGCTTTTGGCCTAG

Coding sequence (CDS)

ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACTGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAATAGGGTCAACAGGGATTGTTAGAGGTGACGATGTCTGTTGCCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGCTATCCTAGCATTTGTTAAGGGAAGTTTTGAGCAAGAAGTAGTTGTGCAGCATCTGAGAAGCTCTAGTGTGAGGCTAGTCGACTTTTCCTGTTTAGCTGAGCTTTTGGCCTAG

Protein sequence

MENRAQDFRAKQEDLWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKLAGGPGGGVTAILAFVKGSFEQEVVVQHLRSSSVRLVDFSCLAELLA

Homology

[Close]

BLAST of Spg019442 vs. NCBI nr
Match: KAA0064296.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01032.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 5.4e-29
Identity = 77/117 (65.81%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 17  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSYFPN 76
           PRGN+ SLQTGELDKT                 VEIEL VPDTLPTSAES  S+SSYF N
Sbjct: 555 PRGNKPSLQTGELDKTVIFPLSTFSVLHDNDAVVEIELSVPDTLPTSAESYGSNSSYFTN 614

Query: 77  QVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKLAGGPGGGVTAILAFVKG 117
           QVMSGLH V    F+VS+GSTGIVRGDDVCCLH VFRAK AGGPGGGVT +   + G
Sbjct: 615 QVMSGLHLV----FNVSVGSTGIVRGDDVCCLHVVFRAKTAGGPGGGVTMVRKAICG 667

[Close]

BLAST of Spg019442 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-24
Identity = 76/130 (58.46%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 14  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS- 73
           D+  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS 
Sbjct: 58  DVMLRGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSST 117

Query: 74  ---------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKLA 111
                          YF NQVMS LH V    FSV +GSTGIVRGDDVC LHAVFRAK  
Sbjct: 118 WLELYFESVHVEMFCYFTNQVMSRLHLV----FSVLVGSTGIVRGDDVCWLHAVFRAKTV 177

[Close]

BLAST of Spg019442 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-24
Identity = 76/130 (58.46%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 14  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS- 73
           D+  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS 
Sbjct: 58  DVMLRGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSST 117

Query: 74  ---------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKLA 111
                          YF NQVMS LH V    FSV +GSTGIVRGDDVC LHAVFRAK  
Sbjct: 118 WLELYFESVHVEMFCYFTNQVMSRLHLV----FSVLVGSTGIVRGDDVCWLHAVFRAKTV 177

[Close]

BLAST of Spg019442 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 6.8e-24
Identity = 75/124 (60.48%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 17  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS---- 76
           PRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SS    
Sbjct: 31  PRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESSGSNSSTWLE 90

Query: 77  ------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKLAGGP 108
                       YF NQVMSGLH V    F+VS+GST IVRGD+VC LHAVF AK AGGP
Sbjct: 91  LNFEFVHVEIFYYFTNQVMSGLHLV----FNVSVGSTRIVRGDNVCWLHAVFWAKTAGGP 150

[Close]

BLAST of Spg019442 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 6.8e-24
Identity = 76/125 (60.80%), Postives = 79/125 (63.20%), Query Frame = 0


Query: 15  LWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSS---- 74
           L PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SS    
Sbjct: 61  LGPRGNRLSLQTGELDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWLE 120

Query: 75  ------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKLAGGP 109
                        F NQVMS LH V    F+VS+GSTGIVRGDDVC LHAVFRAK  GGP
Sbjct: 121 LYFESVHVEMFCSFTNQVMSELHLV----FNVSVGSTGIVRGDDVCWLHAVFRAKTVGGP 180

[Close]

BLAST of Spg019442 vs. ExPASy TrEMBL
Match: A0A5A7VD33 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00370 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.6e-29
Identity = 77/117 (65.81%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 17  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSYFPN 76
           PRGN+ SLQTGELDKT                 VEIEL VPDTLPTSAES  S+SSYF N
Sbjct: 555 PRGNKPSLQTGELDKTVIFPLSTFSVLHDNDAVVEIELSVPDTLPTSAESYGSNSSYFTN 614

Query: 77  QVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKLAGGPGGGVTAILAFVKG 117
           QVMSGLH V    F+VS+GSTGIVRGDDVCCLH VFRAK AGGPGGGVT +   + G
Sbjct: 615 QVMSGLHLV----FNVSVGSTGIVRGDDVCCLHVVFRAKTAGGPGGGVTMVRKAICG 667

[Close]

BLAST of Spg019442 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 8.6e-25
Identity = 76/130 (58.46%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 14  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS- 73
           D+  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS 
Sbjct: 58  DVMLRGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSST 117

Query: 74  ---------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKLA 111
                          YF NQVMS LH V    FSV +GSTGIVRGDDVC LHAVFRAK  
Sbjct: 118 WLELYFESVHVEMFCYFTNQVMSRLHLV----FSVLVGSTGIVRGDDVCWLHAVFRAKTV 177

[Close]

BLAST of Spg019442 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 8.6e-25
Identity = 76/130 (58.46%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 14  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS- 73
           D+  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS 
Sbjct: 58  DVMLRGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSST 117

Query: 74  ---------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKLA 111
                          YF NQVMS LH V    FSV +GSTGIVRGDDVC LHAVFRAK  
Sbjct: 118 WLELYFESVHVEMFCYFTNQVMSRLHLV----FSVLVGSTGIVRGDDVCWLHAVFRAKTV 177

[Close]

BLAST of Spg019442 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.3e-24
Identity = 75/124 (60.48%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 17  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS---- 76
           PRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SS    
Sbjct: 31  PRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESSGSNSSTWLE 90

Query: 77  ------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKLAGGP 108
                       YF NQVMSGLH V    F+VS+GST IVRGD+VC LHAVF AK AGGP
Sbjct: 91  LNFEFVHVEIFYYFTNQVMSGLHLV----FNVSVGSTRIVRGDNVCWLHAVFWAKTAGGP 150

[Close]

BLAST of Spg019442 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.3e-24
Identity = 76/125 (60.80%), Postives = 79/125 (63.20%), Query Frame = 0


Query: 15  LWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSS---- 74
           L PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SS    
Sbjct: 61  LGPRGNRLSLQTGELDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWLE 120

Query: 75  ------------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCCLHAVFRAKLAGGP 109
                        F NQVMS LH V    F+VS+GSTGIVRGDDVC LHAVFRAK  GGP
Sbjct: 121 LYFESVHVEMFCSFTNQVMSELHLV----FNVSVGSTGIVRGDDVCWLHAVFRAKTVGGP 180

The following BLAST results are available for this feature:

BLAST of Spg019442 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064296.1	5.4e-29	65.81	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK...	[more]
KAA0062409.1	1.8e-24	58.46	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK26572.1	1.8e-24	58.46	putative Retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051980.1	6.8e-24	60.48	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D...	[more]
TYK11835.1	6.8e-24	60.80	uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]	[more]

BLAST of Spg019442 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg019442 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VD33	2.6e-29	65.81	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7V9N3	8.6e-25	58.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]
A0A5D3DSY7	8.6e-25	58.46	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7U9X4	3.3e-24	60.48	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CJX3	3.3e-24	60.80	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Spg019442 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg019442.1	Spg019442.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0003824	catalytic activity